Wall clock time and date at job start Tue Mar 31 2020 22:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47276 * 2 1 4 4 C 1.35900 * 117.00454 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05254 * 359.72471 * 4 3 2 6 6 C 1.38144 * 119.94029 * 179.74151 * 5 4 3 7 7 C 1.38260 * 120.06017 * 0.51358 * 6 5 4 8 8 C 1.50695 * 119.94862 * 179.74519 * 7 6 5 9 9 N 1.46503 * 109.46954 * 270.01889 * 8 7 6 10 10 S 1.65604 * 119.99999 * 164.99929 * 9 8 7 11 11 O 1.42093 * 104.27690 * 181.07460 * 10 9 8 12 12 O 1.42102 * 104.27416 * 308.92526 * 10 9 8 13 13 C 1.81397 * 104.44945 * 65.00023 * 10 9 8 14 14 C 1.53000 * 109.47000 * 173.81301 * 13 10 9 15 15 C 1.50705 * 115.54981 * 65.19646 * 14 13 10 16 16 H 1.08004 * 119.99907 * 264.78126 * 15 14 13 17 17 C 1.37872 * 120.00008 * 84.77991 * 15 14 13 18 18 N 1.31515 * 120.00170 * 352.23124 * 17 15 14 19 19 Si 1.86802 * 119.99913 * 172.22646 * 17 15 14 20 20 H 1.48499 * 109.47126 * 60.00004 * 19 17 15 21 21 H 1.48496 * 109.47145 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47045 * 300.00367 * 19 17 15 23 23 C 1.52999 * 117.49874 * 279.52622 * 14 13 10 24 24 C 1.52997 * 117.49950 * 210.86322 * 14 13 10 25 25 C 1.38273 * 120.10910 * 359.76359 * 7 6 5 26 26 C 1.38138 * 120.05485 * 359.97438 * 25 7 6 27 27 H 1.08993 * 109.47230 * 59.99929 * 1 2 3 28 28 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47185 * 299.99975 * 1 2 3 30 30 H 1.09000 * 109.47185 * 240.00025 * 2 1 3 31 31 H 1.09002 * 109.47146 * 119.99947 * 2 1 3 32 32 H 1.08000 * 120.02821 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.96735 * 180.23249 * 6 5 4 34 34 H 1.08998 * 109.47062 * 30.01515 * 8 7 6 35 35 H 1.08999 * 109.47662 * 150.02071 * 8 7 6 36 36 H 0.97003 * 120.00321 * 344.99849 * 9 8 7 37 37 H 1.08998 * 109.46997 * 293.81295 * 13 10 9 38 38 H 1.08997 * 109.47407 * 53.81508 * 13 10 9 39 39 H 0.96997 * 119.99828 * 185.02212 * 18 17 15 40 40 H 1.08992 * 117.50075 * 359.97438 * 23 14 13 41 41 H 1.09003 * 117.49790 * 145.02158 * 23 14 13 42 42 H 1.09005 * 117.50273 * 214.98087 * 24 14 13 43 43 H 1.08996 * 117.49933 * 359.97438 * 24 14 13 44 44 H 1.07995 * 119.97344 * 179.97438 * 25 7 6 45 45 H 1.08002 * 120.02853 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1998 0.4260 0.0047 6 6 5.5690 0.6097 -0.0013 7 6 6.0962 1.8878 -0.0017 8 6 7.5902 2.0853 -0.0024 9 7 8.0750 2.1491 1.3786 10 16 9.6922 1.9884 1.6967 11 8 9.7812 2.0752 3.1122 12 8 10.0681 0.8022 1.0105 13 6 10.4527 3.4410 0.9208 14 6 11.9397 3.4898 1.2773 15 6 12.7760 2.3602 0.7331 16 1 12.9763 1.4932 1.3451 17 6 13.2852 2.4338 -0.5460 18 7 12.9188 3.4124 -1.3445 19 14 14.4959 1.1434 -1.1449 20 1 13.8589 -0.1969 -1.0889 21 1 14.8905 1.4464 -2.5440 22 1 15.7013 1.1552 -0.2775 23 6 12.3195 4.0529 2.6482 24 6 12.5963 4.8677 1.3822 25 6 5.2550 2.9852 -0.0012 26 6 3.8852 2.8069 -0.0007 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7885 -0.5726 0.0088 33 1 6.2281 -0.2459 -0.0010 34 1 8.0668 1.2507 -0.5165 35 1 7.8336 3.0153 -0.5162 36 1 7.4487 2.2855 2.1067 37 1 10.3404 3.3754 -0.1614 38 1 9.9625 4.3448 1.2827 39 1 13.2193 3.4243 -2.2667 40 1 11.5099 4.3891 3.2960 41 1 13.1744 3.6067 3.1564 42 1 13.6331 4.9573 1.0581 43 1 11.9689 5.7395 1.1969 44 1 5.6692 3.9826 -0.0011 45 1 3.2285 3.6643 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451117950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:56 Heat of formation + Delta-G solvation = -68.001502 kcal Electronic energy + Delta-G solvation = -26875.203390 eV Core-core repulsion = 22985.804958 eV Total energy + Delta-G solvation = -3889.398432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39040 -38.16350 -36.74382 -36.22500 -35.12133 -34.78836 -32.23590 -32.03589 -31.11382 -29.90192 -28.14857 -25.46743 -25.34268 -24.24875 -22.30382 -21.24661 -21.20516 -19.71706 -18.63974 -18.52678 -17.09339 -16.54701 -16.42633 -16.19192 -16.03540 -15.16846 -14.97822 -14.72554 -14.49312 -14.18738 -13.95768 -13.79604 -13.67725 -13.60255 -13.13427 -12.95773 -12.78246 -12.34656 -12.00758 -11.93366 -11.87446 -11.81266 -11.27043 -11.15194 -11.13621 -11.03099 -10.95671 -10.90493 -10.90105 -10.58895 -10.44874 -10.11004 -9.72303 -9.21863 -9.15387 -8.95492 -8.55564 -8.33458 -8.07765 -6.13335 -4.23749 0.97777 1.18119 1.31789 2.89578 3.33157 3.35010 3.39797 3.41749 3.74908 4.37961 4.49482 4.52610 4.54507 4.65947 4.70246 4.74789 4.85171 5.02465 5.07526 5.15078 5.20395 5.22977 5.23637 5.37599 5.42487 5.52928 5.61093 5.62818 5.73935 5.89110 5.98414 6.04711 6.13130 6.20698 6.28004 6.38235 6.50953 6.57597 6.62099 6.73154 6.99286 7.17041 7.23585 7.31607 7.39886 7.81087 8.21238 8.81465 9.47265 10.94323 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002497 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.462834 B =11211.612242 C =11671.220409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.318 6.318 4 C 0.130 3.870 5 C -0.211 4.211 6 C -0.060 4.060 7 C -0.129 4.129 8 C 0.160 3.840 9 N -1.130 6.130 10 S 2.607 3.393 11 O -0.974 6.974 12 O -0.950 6.950 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.516 4.516 16 H 0.068 0.932 17 C 0.082 3.918 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.208 4.208 24 C -0.141 4.141 25 C -0.064 4.064 26 C -0.155 4.155 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.554 -2.106 0.360 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.232 6.232 4 C 0.084 3.916 5 C -0.230 4.230 6 C -0.079 4.079 7 C -0.130 4.130 8 C 0.034 3.966 9 N -0.886 5.886 10 S 2.704 3.296 11 O -0.965 6.965 12 O -0.940 6.940 13 C -0.687 4.687 14 C 0.041 3.959 15 C -0.553 4.553 16 H 0.086 0.914 17 C -0.123 4.123 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.083 4.083 26 C -0.174 4.174 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.242 0.758 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.130 -2.637 0.501 21.300 hybrid contribution 0.271 -0.145 -0.591 0.666 sum -20.859 -2.782 -0.090 21.044 Atomic orbital electron populations 1.21774 0.92749 1.02872 1.03515 1.22787 0.95845 0.82011 1.01525 1.86057 1.19196 1.29313 1.88654 1.19035 0.82127 0.94261 0.96163 1.21236 0.94270 0.98031 1.09425 1.20986 0.94263 0.97169 0.95449 1.19815 0.95247 0.93288 1.04684 1.20103 0.90549 1.02834 0.83138 1.56068 1.27509 1.91872 1.13198 1.05143 0.72083 0.77783 0.74582 1.93504 1.85170 1.88236 1.29576 1.93532 1.80985 1.43735 1.75756 1.29980 1.08525 1.16576 1.13646 1.18279 0.87461 0.95763 0.94433 1.20484 1.32102 1.02836 0.99859 0.91403 1.24949 0.95661 0.95190 0.96503 1.69966 1.44110 1.31241 1.05724 0.86654 0.81624 0.82345 0.77622 1.19463 1.21148 1.19911 1.23197 1.03022 1.06966 0.91370 1.22553 1.01287 0.94313 0.99916 1.20958 0.91976 0.98982 0.96375 1.20409 0.95165 0.94763 1.07023 0.91521 0.90361 0.91520 0.91966 0.91967 0.85485 0.85173 0.89334 0.90916 0.75780 0.84839 0.88225 0.92682 0.90670 0.89547 0.89607 0.91532 0.84866 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.24 10.14 -19.43 -0.20 -3.44 16 4 C 0.13 1.41 6.69 -39.21 -0.26 1.15 16 5 C -0.21 -2.19 9.04 -39.43 -0.36 -2.55 16 6 C -0.06 -0.68 9.69 -39.61 -0.38 -1.07 16 7 C -0.13 -1.52 5.28 -104.60 -0.55 -2.07 16 8 C 0.16 2.12 6.25 -5.19 -0.03 2.08 16 9 N -1.13 -16.69 5.88 -11.66 -0.07 -16.76 16 10 S 2.61 51.87 5.19 -107.50 -0.56 51.32 16 11 O -0.97 -21.33 18.08 -57.54 -1.04 -22.37 16 12 O -0.95 -22.31 17.17 -57.54 -0.99 -23.30 16 13 C -0.55 -11.40 5.93 37.16 0.22 -11.18 16 14 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 15 C -0.52 -14.03 8.18 -34.44 -0.28 -14.31 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 17 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 18 N -0.88 -23.85 12.98 55.43 0.72 -23.13 16 19 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 24 C -0.14 -3.21 9.49 -26.69 -0.25 -3.46 16 25 C -0.06 -0.68 9.69 -39.61 -0.38 -1.06 16 26 C -0.15 -1.62 9.99 -39.43 -0.39 -2.02 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 31 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 32 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.09 1.25 7.64 -51.93 -0.40 0.85 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.41 5.30 8.61 -34.47 -0.30 5.00 16 37 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 38 H 0.10 1.72 8.09 -51.93 -0.42 1.30 16 39 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -33.35 392.43 -10.76 -44.11 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.86 Total: 7.60 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: -2.66 Total: -36.19 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.65 Total: -39.89 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.22 Total: -49.11 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.56 Total: 51.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.35 -10.76 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451117950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.894 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds