Wall clock time and date at job start Tue Mar 31 2020 22:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47276 * 2 1 4 4 C 1.35900 * 117.00454 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05254 * 359.72471 * 4 3 2 6 6 C 1.38144 * 119.94029 * 179.74151 * 5 4 3 7 7 C 1.38260 * 120.06017 * 0.51358 * 6 5 4 8 8 C 1.50695 * 119.94862 * 179.74519 * 7 6 5 9 9 N 1.46503 * 109.46954 * 270.01889 * 8 7 6 10 10 S 1.65604 * 119.99999 * 164.99929 * 9 8 7 11 11 O 1.42093 * 104.27690 * 181.07460 * 10 9 8 12 12 O 1.42102 * 104.27416 * 308.92526 * 10 9 8 13 13 C 1.81397 * 104.44945 * 65.00023 * 10 9 8 14 14 C 1.53000 * 109.47000 * 173.81301 * 13 10 9 15 15 C 1.50705 * 115.54981 * 65.19646 * 14 13 10 16 16 H 1.08004 * 119.99907 * 264.78126 * 15 14 13 17 17 C 1.37872 * 120.00008 * 84.77991 * 15 14 13 18 18 N 1.31515 * 120.00170 * 352.23124 * 17 15 14 19 19 Si 1.86802 * 119.99913 * 172.22646 * 17 15 14 20 20 H 1.48499 * 109.47126 * 60.00004 * 19 17 15 21 21 H 1.48496 * 109.47145 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47045 * 300.00367 * 19 17 15 23 23 C 1.52999 * 117.49874 * 279.52622 * 14 13 10 24 24 C 1.52997 * 117.49950 * 210.86322 * 14 13 10 25 25 C 1.38273 * 120.10910 * 359.76359 * 7 6 5 26 26 C 1.38138 * 120.05485 * 359.97438 * 25 7 6 27 27 H 1.08993 * 109.47230 * 59.99929 * 1 2 3 28 28 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47185 * 299.99975 * 1 2 3 30 30 H 1.09000 * 109.47185 * 240.00025 * 2 1 3 31 31 H 1.09002 * 109.47146 * 119.99947 * 2 1 3 32 32 H 1.08000 * 120.02821 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.96735 * 180.23249 * 6 5 4 34 34 H 1.08998 * 109.47062 * 30.01515 * 8 7 6 35 35 H 1.08999 * 109.47662 * 150.02071 * 8 7 6 36 36 H 0.97003 * 120.00321 * 344.99849 * 9 8 7 37 37 H 1.08998 * 109.46997 * 293.81295 * 13 10 9 38 38 H 1.08997 * 109.47407 * 53.81508 * 13 10 9 39 39 H 0.96997 * 119.99828 * 185.02212 * 18 17 15 40 40 H 1.08992 * 117.50075 * 359.97438 * 23 14 13 41 41 H 1.09003 * 117.49790 * 145.02158 * 23 14 13 42 42 H 1.09005 * 117.50273 * 214.98087 * 24 14 13 43 43 H 1.08996 * 117.49933 * 359.97438 * 24 14 13 44 44 H 1.07995 * 119.97344 * 179.97438 * 25 7 6 45 45 H 1.08002 * 120.02853 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1998 0.4260 0.0047 6 6 5.5690 0.6097 -0.0013 7 6 6.0962 1.8878 -0.0017 8 6 7.5902 2.0853 -0.0024 9 7 8.0750 2.1491 1.3786 10 16 9.6922 1.9884 1.6967 11 8 9.7812 2.0752 3.1122 12 8 10.0681 0.8022 1.0105 13 6 10.4527 3.4410 0.9208 14 6 11.9397 3.4898 1.2773 15 6 12.7760 2.3602 0.7331 16 1 12.9763 1.4932 1.3451 17 6 13.2852 2.4338 -0.5460 18 7 12.9188 3.4124 -1.3445 19 14 14.4959 1.1434 -1.1449 20 1 13.8589 -0.1969 -1.0889 21 1 14.8905 1.4464 -2.5440 22 1 15.7013 1.1552 -0.2775 23 6 12.3195 4.0529 2.6482 24 6 12.5963 4.8677 1.3822 25 6 5.2550 2.9852 -0.0012 26 6 3.8852 2.8069 -0.0007 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7885 -0.5726 0.0088 33 1 6.2281 -0.2459 -0.0010 34 1 8.0668 1.2507 -0.5165 35 1 7.8336 3.0153 -0.5162 36 1 7.4487 2.2855 2.1067 37 1 10.3404 3.3754 -0.1614 38 1 9.9625 4.3448 1.2827 39 1 13.2193 3.4243 -2.2667 40 1 11.5099 4.3891 3.2960 41 1 13.1744 3.6067 3.1564 42 1 13.6331 4.9573 1.0581 43 1 11.9689 5.7395 1.1969 44 1 5.6692 3.9826 -0.0011 45 1 3.2285 3.6643 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451117950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:55 Heat of formation + Delta-G solvation = -89.604914 kcal Electronic energy + Delta-G solvation = -26876.140185 eV Core-core repulsion = 22985.804958 eV Total energy + Delta-G solvation = -3890.335226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15469 -38.97238 -38.54122 -37.90451 -36.76931 -35.93474 -34.06540 -32.84476 -31.88976 -30.78432 -29.81769 -27.46731 -26.32347 -24.90626 -23.04834 -22.97184 -22.05248 -21.49544 -20.21475 -19.26166 -18.52388 -18.32632 -17.43176 -17.05769 -17.02950 -16.70477 -16.68325 -16.15371 -15.73918 -15.45085 -15.20670 -14.86562 -14.82199 -14.43129 -14.27971 -13.83947 -13.70302 -13.60311 -13.52337 -13.26392 -13.10454 -12.88579 -12.87833 -12.83449 -12.72693 -12.59063 -12.42431 -12.23678 -12.17328 -11.88763 -11.70040 -11.62723 -11.52720 -10.85960 -10.54016 -10.48175 -9.97270 -9.84693 -9.15167 -8.17592 -6.31765 -0.50651 0.36705 0.38581 1.40659 1.42070 1.49360 2.09854 2.24958 2.41144 2.79788 2.97906 3.09782 3.40764 3.49017 3.74560 3.82142 3.93767 4.00956 4.05375 4.12303 4.30138 4.35249 4.36426 4.40208 4.50064 4.54164 4.57495 4.62610 4.74248 4.85843 4.90603 4.94207 4.95216 5.00011 5.08685 5.19783 5.23577 5.29568 5.37414 5.49702 5.60895 5.65505 5.73613 5.79160 6.17640 6.24866 6.43949 6.73849 7.40131 8.89188 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002497 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.462834 B =11211.612242 C =11671.220409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.123 3.877 5 C -0.213 4.213 6 C -0.072 4.072 7 C -0.140 4.140 8 C 0.154 3.846 9 N -1.111 6.111 10 S 2.624 3.376 11 O -0.997 6.997 12 O -0.993 6.993 13 C -0.551 4.551 14 C 0.010 3.990 15 C -0.534 4.534 16 H 0.048 0.952 17 C 0.043 3.957 18 N -0.891 5.891 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.274 1.274 22 H -0.269 1.269 23 C -0.198 4.198 24 C -0.138 4.138 25 C -0.061 4.061 26 C -0.162 4.162 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.421 0.579 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.153 0.847 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.290 -1.472 0.349 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.077 3.923 5 C -0.232 4.232 6 C -0.091 4.091 7 C -0.142 4.142 8 C 0.029 3.971 9 N -0.872 5.872 10 S 2.722 3.278 11 O -0.987 6.987 12 O -0.983 6.983 13 C -0.684 4.684 14 C 0.007 3.993 15 C -0.572 4.572 16 H 0.066 0.934 17 C -0.160 4.160 18 N -0.527 5.527 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.199 1.199 22 H -0.194 1.194 23 C -0.235 4.235 24 C -0.177 4.177 25 C -0.080 4.080 26 C -0.180 4.180 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.171 0.829 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.864 -2.002 0.502 22.957 hybrid contribution 0.698 -0.365 -0.573 0.974 sum -22.166 -2.367 -0.071 22.292 Atomic orbital electron populations 1.21801 0.91424 1.04136 1.03247 1.23062 0.96954 0.80849 1.02212 1.86055 1.18756 1.31196 1.88470 1.19246 0.82625 0.94603 0.95791 1.21402 0.93806 0.98983 1.08995 1.21111 0.94882 0.97234 0.95883 1.19716 0.94261 0.93953 1.06258 1.20269 0.91644 1.03328 0.81885 1.55559 1.25583 1.91473 1.14551 1.04321 0.72951 0.76986 0.73551 1.93461 1.86071 1.88368 1.30800 1.93479 1.82458 1.45922 1.76430 1.29863 1.06685 1.18544 1.13315 1.18428 0.89118 0.95553 0.96154 1.20663 1.33094 1.03349 1.00052 0.93402 1.25500 0.96891 0.96848 0.96759 1.70006 1.44768 1.32041 1.05853 0.85982 0.80121 0.80137 0.77835 1.20253 1.19888 1.19446 1.23246 1.03421 1.05843 0.90971 1.22514 1.00482 0.94540 1.00197 1.21149 0.91897 0.99459 0.95467 1.20657 0.95422 0.95269 1.06701 0.91744 0.88341 0.91809 0.91207 0.91316 0.83769 0.85282 0.90714 0.89056 0.74350 0.85576 0.84607 0.92523 0.88256 0.90074 0.91628 0.89251 0.82947 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 71.98 0.74 -0.56 16 2 C 0.04 0.54 5.46 71.98 0.39 0.94 16 3 O -0.33 -6.24 10.14 -92.42 -0.94 -7.18 16 4 C 0.12 2.48 6.69 22.51 0.15 2.64 16 5 C -0.21 -4.16 9.04 22.37 0.20 -3.96 16 6 C -0.07 -1.59 9.69 22.25 0.22 -1.37 16 7 C -0.14 -3.11 5.28 -19.85 -0.10 -3.21 16 8 C 0.15 3.91 6.25 85.63 0.54 4.45 16 9 N -1.11 -31.39 5.88 -190.79 -1.12 -32.51 16 10 S 2.62 103.07 5.19 -56.49 -0.29 102.77 16 11 O -1.00 -42.82 18.08 -127.65 -2.31 -45.13 16 12 O -0.99 -47.39 17.17 -127.65 -2.19 -49.58 16 13 C -0.55 -21.95 5.93 71.98 0.43 -21.53 16 14 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 15 C -0.53 -29.41 8.18 25.60 0.21 -29.20 16 16 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 17 C 0.04 2.35 5.38 84.65 0.46 2.80 16 18 N -0.89 -48.46 12.98 21.45 0.28 -48.19 16 19 Si 0.93 43.81 29.55 68.60 2.03 45.84 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C -0.20 -8.42 9.96 30.62 0.30 -8.12 16 24 C -0.14 -6.11 9.49 30.62 0.29 -5.82 16 25 C -0.06 -1.16 9.69 22.25 0.22 -0.94 16 26 C -0.16 -3.08 9.99 22.36 0.22 -2.86 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 31 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 32 H 0.14 2.18 6.30 -2.91 -0.02 2.16 16 33 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.07 2.11 7.64 -2.39 -0.02 2.09 16 35 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 36 H 0.42 10.15 8.61 -96.74 -0.83 9.32 16 37 H 0.13 5.23 8.14 -2.39 -0.02 5.21 16 38 H 0.14 4.30 8.09 -2.39 -0.02 4.28 16 39 H 0.27 13.77 8.32 -92.71 -0.77 13.00 16 40 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 41 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 43 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 45 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -71.06 392.43 -0.20 -71.26 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.16 Total: 29.07 kcal Atomic # 6 Polarization: -70.55 SS G_CDS: 4.19 Total: -66.36 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -0.84 Total: -80.69 kcal Atomic # 8 Polarization: -96.45 SS G_CDS: -5.44 Total: -101.89 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 103.07 SS G_CDS: -0.29 Total: 102.77 kcal Total: -71.06 -0.20 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451117950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.348 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds