Wall clock time and date at job start Tue Mar 31 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00091 * 2 1 4 4 H 1.09002 * 109.47207 * 173.53861 * 3 2 1 5 5 C 1.53002 * 109.46823 * 293.53223 * 3 2 1 6 6 O 1.42894 * 109.47250 * 67.45560 * 5 3 2 7 7 C 1.50696 * 109.47489 * 53.53536 * 3 2 1 8 8 C 1.38238 * 119.99460 * 299.99235 * 7 3 2 9 9 C 1.38241 * 119.99741 * 179.78564 * 8 7 3 10 10 C 1.38235 * 119.99985 * 0.44598 * 9 8 7 11 11 C 1.38237 * 120.00043 * 359.80919 * 10 9 8 12 12 C 1.38233 * 120.00319 * 120.26886 * 7 3 2 13 13 S 1.65602 * 119.99964 * 179.97438 * 2 1 3 14 14 O 1.42099 * 104.27901 * 333.92734 * 13 2 1 15 15 O 1.42106 * 104.27872 * 206.07251 * 13 2 1 16 16 C 1.81396 * 104.45124 * 90.00099 * 13 2 1 17 17 C 1.53001 * 109.47486 * 186.10081 * 16 13 2 18 18 C 1.50700 * 115.54712 * 297.54678 * 17 16 13 19 19 H 1.07996 * 120.00005 * 95.32118 * 18 17 16 20 20 C 1.37878 * 119.99728 * 275.04292 * 18 17 16 21 21 N 1.31515 * 119.99895 * 355.58736 * 20 18 17 22 22 Si 1.86798 * 119.99829 * 175.59381 * 20 18 17 23 23 H 1.48507 * 109.47241 * 89.99750 * 22 20 18 24 24 H 1.48500 * 109.47220 * 209.99701 * 22 20 18 25 25 H 1.48499 * 109.47293 * 330.00080 * 22 20 18 26 26 C 1.53001 * 117.49812 * 83.21150 * 17 16 13 27 27 C 1.52995 * 117.49909 * 151.86976 * 17 16 13 28 28 H 1.09000 * 109.47026 * 272.86193 * 1 2 3 29 29 H 1.08999 * 109.47327 * 32.86221 * 1 2 3 30 30 H 1.08999 * 109.47355 * 152.86387 * 1 2 3 31 31 H 1.09009 * 109.47139 * 187.45275 * 5 3 2 32 32 H 1.09001 * 109.46931 * 307.45354 * 5 3 2 33 33 H 0.96702 * 114.00419 * 179.97438 * 6 5 3 34 34 H 1.07997 * 120.00353 * 359.97438 * 8 7 3 35 35 H 1.08004 * 119.99680 * 180.27211 * 9 8 7 36 36 H 1.08000 * 119.99940 * 179.83272 * 10 9 8 37 37 H 1.08000 * 120.00304 * 180.02562 * 11 10 9 38 38 H 1.07997 * 120.00150 * 359.97328 * 12 7 3 39 39 H 1.09003 * 109.47094 * 66.09722 * 16 13 2 40 40 H 1.08998 * 109.47127 * 306.10411 * 16 13 2 41 41 H 0.96999 * 119.99786 * 185.00255 * 21 20 18 42 42 H 1.08997 * 117.50051 * 215.00660 * 26 17 16 43 43 H 1.09006 * 117.49827 * 0.02562 * 26 17 16 44 44 H 1.09005 * 117.50032 * 359.97438 * 27 17 16 45 45 H 1.09004 * 117.49669 * 144.97582 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2635 1.0728 0.1156 5 6 1.9536 1.9983 -1.3226 6 8 0.5868 2.4085 -1.3954 7 6 1.7174 2.1260 1.1426 8 6 0.3903 2.5068 1.2108 9 6 -0.0511 3.2895 2.2613 10 6 0.8366 3.6991 3.2386 11 6 2.1648 3.3227 3.1676 12 6 2.6053 2.5364 2.1194 13 16 2.2929 -1.4342 0.0006 14 8 1.3969 -2.3559 0.6063 15 8 3.5395 -1.1189 0.6058 16 6 2.5193 -1.8270 -1.7557 17 6 3.1446 -3.2168 -1.8911 18 6 4.5181 -3.3728 -1.2908 19 1 4.6287 -3.7630 -0.2899 20 6 5.6336 -3.0226 -2.0215 21 7 5.5058 -2.6349 -3.2717 22 14 7.3266 -3.0991 -1.2357 23 1 7.9128 -4.4462 -1.4531 24 1 8.2048 -2.0719 -1.8512 25 1 7.2081 -2.8403 0.2217 26 6 2.2055 -4.4230 -1.8294 27 6 2.8349 -4.0100 -3.1622 28 1 -0.3633 0.0513 1.0264 29 1 -0.3634 0.8632 -0.5576 30 1 -0.3634 -0.9145 -0.4687 31 1 2.5994 2.8747 -1.3785 32 1 2.1769 1.3288 -2.1533 33 1 0.3600 2.8789 -2.2093 34 1 -0.3024 2.1902 0.4450 35 1 -1.0889 3.5834 2.3169 36 1 0.4923 4.3129 4.0578 37 1 2.8583 3.6424 3.9313 38 1 3.6430 2.2422 2.0639 39 1 3.1767 -1.0867 -2.2118 40 1 1.5524 -1.8130 -2.2587 41 1 6.2946 -2.4584 -3.8078 42 1 2.5810 -5.3295 -1.3547 43 1 1.1420 -4.2265 -1.6928 44 1 2.1853 -3.5419 -3.9018 45 1 3.6247 -4.6445 -3.5645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451756546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:12 Heat of formation + Delta-G solvation = -79.052228 kcal Electronic energy + Delta-G solvation = -28903.734307 eV Core-core repulsion = 25013.856679 eV Total energy + Delta-G solvation = -3889.877628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69544 -38.57823 -38.25469 -38.01987 -36.83599 -36.16167 -34.09012 -32.56094 -31.64453 -29.94888 -29.65494 -27.52647 -26.76453 -24.16022 -23.33694 -22.97222 -21.89296 -21.29517 -19.83666 -18.86252 -18.44847 -18.06876 -17.57193 -17.12750 -16.92376 -16.68239 -16.30090 -15.80027 -15.69471 -15.59429 -15.34890 -14.92463 -14.47604 -14.31157 -13.89126 -13.75621 -13.68739 -13.46810 -13.37350 -13.34228 -13.15931 -13.10506 -12.92867 -12.85733 -12.65102 -12.45808 -12.31060 -12.16511 -11.93982 -11.87950 -11.65088 -11.50685 -11.00174 -10.69874 -10.51884 -10.14396 -9.77406 -9.69750 -9.59286 -8.20016 -6.36327 -0.60118 0.48439 0.60579 1.35120 1.38524 1.51099 1.91706 2.38445 2.92805 2.99139 3.06519 3.30498 3.37443 3.41111 3.61643 3.89070 3.94894 4.12181 4.13830 4.24670 4.26041 4.35834 4.49045 4.51806 4.57447 4.61663 4.65805 4.73277 4.82053 4.84628 4.86220 4.97528 5.04178 5.16612 5.17498 5.20991 5.34598 5.42033 5.62332 5.63043 5.66691 5.69929 5.71355 5.83338 6.20591 6.20889 6.69836 6.99930 7.36601 8.85930 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.004160 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.535499 B = 6728.618681 C = 7364.381860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.991 5.991 3 C 0.177 3.823 4 H 0.100 0.900 5 C 0.076 3.924 6 O -0.564 6.564 7 C -0.104 4.104 8 C -0.093 4.093 9 C -0.137 4.137 10 C -0.123 4.123 11 C -0.136 4.136 12 C -0.134 4.134 13 S 2.613 3.387 14 O -0.993 6.993 15 O -0.990 6.990 16 C -0.547 4.547 17 C 0.006 3.994 18 C -0.535 4.535 19 H 0.044 0.956 20 C 0.047 3.953 21 N -0.889 5.889 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.271 1.271 25 H -0.278 1.278 26 C -0.199 4.199 27 C -0.128 4.128 28 H 0.047 0.953 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.394 0.606 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.266 0.734 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.241 15.358 2.911 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.828 5.828 3 C 0.071 3.929 4 H 0.118 0.882 5 C -0.004 4.004 6 O -0.373 6.373 7 C -0.106 4.106 8 C -0.111 4.111 9 C -0.155 4.155 10 C -0.141 4.141 11 C -0.154 4.154 12 C -0.152 4.152 13 S 2.712 3.288 14 O -0.983 6.983 15 O -0.980 6.980 16 C -0.680 4.680 17 C 0.004 3.996 18 C -0.572 4.572 19 H 0.062 0.938 20 C -0.156 4.156 21 N -0.525 5.525 22 Si 0.755 3.245 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.204 1.204 26 C -0.236 4.236 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.245 0.755 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.905 14.735 4.138 19.390 hybrid contribution 1.461 -0.037 -0.808 1.670 sum -10.445 14.698 3.330 18.336 Atomic orbital electron populations 1.22033 0.77436 1.04839 1.02334 1.57491 1.15945 1.19408 1.90003 1.20084 0.96215 0.82472 0.94158 0.88228 1.22451 0.84602 0.98211 0.95104 1.86381 1.25784 1.78853 1.46305 1.19922 0.95351 0.99049 0.96246 1.21738 0.95180 0.95904 0.98293 1.21544 1.00786 0.98552 0.94615 1.21499 0.93237 0.99875 0.99466 1.21335 0.97058 0.98777 0.98268 1.21343 0.99875 0.98893 0.95131 1.04770 0.72563 0.72814 0.78647 1.93446 1.65558 1.63740 1.75558 1.93459 1.45755 1.83163 1.75636 1.29900 1.08529 1.07097 1.22457 1.18428 0.93416 0.85905 1.01851 1.20681 0.90655 1.45149 1.00728 0.93752 1.25446 1.01635 0.93350 0.95220 1.70032 1.30489 1.44658 1.07338 0.85981 0.80844 0.78570 0.79128 1.19371 1.19598 1.20351 1.23234 0.97912 0.99851 1.02611 1.22445 1.00836 1.03340 0.90089 0.93469 0.85946 0.91217 0.91016 0.92310 0.75492 0.82715 0.83832 0.83884 0.84619 0.86648 0.85923 0.84792 0.92475 0.90227 0.88398 0.89365 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 8.20 127.77 1.05 3.03 16 2 N -0.99 -31.17 3.00 -520.47 -1.56 -32.73 16 3 C 0.18 5.06 2.92 44.24 0.13 5.19 16 4 H 0.10 3.24 6.51 -2.39 -0.02 3.23 16 5 C 0.08 1.58 6.83 71.98 0.49 2.07 16 6 O -0.56 -8.83 8.29 -148.98 -1.23 -10.07 16 7 C -0.10 -2.83 4.93 -19.87 -0.10 -2.92 16 8 C -0.09 -2.15 7.01 22.27 0.16 -1.99 16 9 C -0.14 -2.72 10.05 22.27 0.22 -2.49 16 10 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 11 C -0.14 -3.09 10.05 22.27 0.22 -2.86 16 12 C -0.13 -3.65 9.67 22.27 0.22 -3.43 16 13 S 2.61 109.01 5.05 -56.49 -0.29 108.73 16 14 O -0.99 -45.23 17.03 -127.65 -2.17 -47.40 16 15 O -0.99 -48.93 16.08 -127.65 -2.05 -50.98 16 16 C -0.55 -22.30 6.04 71.98 0.43 -21.86 16 17 C 0.01 0.30 1.45 -52.93 -0.08 0.22 16 18 C -0.53 -29.87 8.01 25.60 0.21 -29.66 16 19 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 20 C 0.05 2.56 5.43 84.65 0.46 3.02 16 21 N -0.89 -48.40 12.66 21.45 0.27 -48.12 16 22 Si 0.93 44.24 29.54 68.60 2.03 46.27 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 26 C -0.20 -8.64 9.96 30.62 0.30 -8.34 16 27 C -0.13 -5.74 9.16 30.62 0.28 -5.46 16 28 H 0.05 1.23 7.55 -2.39 -0.02 1.21 16 29 H 0.12 2.44 4.06 -2.39 -0.01 2.43 16 30 H 0.07 1.70 7.69 -2.39 -0.02 1.69 16 31 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.39 2.69 9.12 -74.06 -0.68 2.01 16 34 H 0.16 3.15 3.94 -2.91 -0.01 3.14 16 35 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.12 3.20 7.95 -2.91 -0.02 3.17 16 39 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 40 H 0.13 4.38 8.11 -2.39 -0.02 4.36 16 41 H 0.27 13.72 8.32 -92.71 -0.77 12.95 16 42 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 44 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 45 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -73.03 374.96 -0.46 -73.49 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.33 Total: 28.50 kcal Atomic # 6 Polarization: -71.91 SS G_CDS: 4.22 Total: -67.69 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.29 Total: -80.85 kcal Atomic # 8 Polarization: -102.99 SS G_CDS: -5.46 Total: -108.45 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 109.01 SS G_CDS: -0.29 Total: 108.73 kcal Total: -73.03 -0.46 -73.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451756546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds