Wall clock time and date at job start Tue Mar 31 2020 22:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00300 * 2 1 4 4 C 1.53001 * 109.47426 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47031 * 65.00198 * 4 3 2 6 6 C 1.37094 * 120.00198 * 86.30269 * 5 4 3 7 7 H 1.08002 * 120.00017 * 219.94348 * 6 5 4 8 8 C 1.38946 * 119.99753 * 39.95658 * 6 5 4 9 9 N 1.31406 * 120.00263 * 18.85566 * 8 6 5 10 10 Si 1.86806 * 119.99569 * 198.86050 * 8 6 5 11 11 H 1.48504 * 109.47068 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47206 * 119.99616 * 10 8 6 13 13 H 1.48498 * 109.47022 * 239.99431 * 10 8 6 14 14 C 1.34779 * 119.99457 * 266.30695 * 5 4 3 15 15 O 1.21292 * 120.00092 * 359.97438 * 14 5 4 16 16 C 1.50705 * 119.99934 * 179.97438 * 14 5 4 17 17 H 1.09000 * 109.46770 * 324.99614 * 16 14 5 18 18 C 1.52994 * 109.46919 * 85.00046 * 16 14 5 19 19 S 1.81399 * 109.46974 * 204.99952 * 16 14 5 20 20 C 1.76198 * 102.99960 * 70.72566 * 19 16 14 21 21 C 1.38914 * 120.02621 * 4.56015 * 20 19 16 22 22 C 1.38096 * 119.97723 * 179.76982 * 21 20 19 23 23 C 1.38717 * 120.01747 * 0.51157 * 22 21 20 24 24 O 1.36006 * 119.96877 * 179.76418 * 23 22 21 25 25 C 1.42895 * 117.00369 * 359.97438 * 24 23 22 26 26 C 1.38705 * 120.05555 * 359.74556 * 23 22 21 27 27 C 1.38095 * 120.02528 * 359.97438 * 26 23 22 28 28 H 1.08998 * 109.47363 * 60.00384 * 1 2 3 29 29 H 1.09003 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47305 * 300.00233 * 1 2 3 31 31 H 1.08993 * 109.47160 * 59.99601 * 3 2 1 32 32 H 1.09009 * 109.46750 * 299.99963 * 3 2 1 33 33 H 1.08990 * 109.46871 * 304.99945 * 4 3 2 34 34 H 1.09001 * 109.46864 * 184.99086 * 4 3 2 35 35 H 0.97000 * 119.99783 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47241 * 295.16780 * 18 16 14 37 37 H 1.09000 * 109.47583 * 55.16559 * 18 16 14 38 38 H 1.09004 * 109.47310 * 175.16935 * 18 16 14 39 39 H 1.07999 * 120.01367 * 0.03344 * 21 20 19 40 40 H 1.07996 * 119.99292 * 180.23432 * 22 21 20 41 41 H 1.09003 * 109.47029 * 299.99391 * 25 24 23 42 42 H 1.08993 * 109.47354 * 59.99313 * 25 24 23 43 43 H 1.08999 * 109.47426 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.99174 * 179.97438 * 26 23 22 45 45 H 1.07998 * 120.01542 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1934 1.3396 -2.3623 7 1 3.8895 0.9858 -3.3364 8 6 4.8053 2.5804 -2.2336 9 7 5.5002 2.8616 -1.1543 10 14 4.6401 3.8490 -3.5949 11 1 3.8133 3.2901 -4.6946 12 1 3.9888 5.0703 -3.0570 13 1 5.9872 4.1948 -4.1154 14 6 4.1665 -0.7684 -1.3139 15 8 3.9742 -1.4543 -0.3321 16 6 4.6187 -1.4066 -2.6021 17 1 4.1737 -0.8782 -3.4451 18 6 6.1437 -1.3315 -2.7005 19 16 4.0956 -3.1433 -2.6327 20 6 2.3488 -3.0275 -2.8328 21 6 1.7510 -1.7873 -3.0174 22 6 0.3824 -1.6982 -3.1788 23 6 -0.3964 -2.8457 -3.1461 24 8 -1.7447 -2.7563 -3.3005 25 6 -2.2907 -1.4497 -3.4915 26 6 0.1989 -4.0841 -2.9566 27 6 1.5679 -4.1761 -2.8007 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0888 35 1 5.9270 3.7280 -1.0643 36 1 6.4525 -0.2884 -2.7685 37 1 6.5878 -1.7848 -1.8142 38 1 6.4773 -1.8679 -3.5888 39 1 2.3567 -0.8934 -3.0388 40 1 -0.0823 -0.7345 -3.3261 41 1 -2.0528 -0.8269 -2.6291 42 1 -1.8630 -1.0049 -4.3899 43 1 -3.3729 -1.5204 -3.6005 44 1 -0.4085 -4.9768 -2.9309 45 1 2.0312 -5.1404 -2.6527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457181120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:03 Heat of formation + Delta-G solvation = -79.151214 kcal Electronic energy + Delta-G solvation = -29072.671129 eV Core-core repulsion = 25182.789209 eV Total energy + Delta-G solvation = -3889.881920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.82290 -38.77919 -37.10427 -36.96044 -34.76939 -32.46803 -31.67480 -30.84113 -29.92126 -29.00513 -27.29063 -25.83151 -25.00248 -24.06864 -22.43643 -22.06068 -21.34816 -19.21997 -18.08585 -17.31319 -16.58785 -16.39849 -15.92544 -15.70734 -15.60719 -15.37265 -14.88182 -14.51159 -14.48551 -14.29516 -13.90448 -13.57436 -13.49095 -13.04636 -12.97383 -12.65036 -12.53685 -12.00009 -11.88228 -11.75941 -11.72373 -11.41363 -11.29880 -11.17080 -11.08848 -10.96105 -10.84198 -10.59479 -10.56013 -10.41452 -10.25751 -9.61513 -9.24612 -9.02764 -8.78885 -8.70957 -8.37964 -7.53967 -6.67654 -6.47345 -4.22533 1.56728 1.62471 2.09613 2.90665 3.00682 3.12807 3.14881 3.38192 3.88234 3.97607 4.04778 4.49703 4.67282 4.85492 4.95717 5.06943 5.13324 5.17424 5.41254 5.54480 5.58577 5.61152 5.62455 5.67788 5.72827 5.84686 5.91762 5.97930 6.05236 6.09779 6.22473 6.25579 6.29118 6.36796 6.39099 6.59874 6.64689 6.72791 6.81290 6.88705 7.12508 7.32299 7.52251 7.84166 7.88209 8.26327 8.98608 9.43497 9.91018 10.53285 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.005110 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.486262 B = 5478.187021 C = 6345.264434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.049 3.951 4 C 0.118 3.882 5 N -0.434 5.434 6 C -0.341 4.341 7 H 0.084 0.916 8 C 0.048 3.952 9 N -0.858 5.858 10 Si 0.908 3.092 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.484 3.516 15 O -0.562 6.562 16 C -0.079 4.079 17 H 0.105 0.895 18 C -0.118 4.118 19 S -0.096 6.096 20 C -0.101 4.101 21 C -0.072 4.072 22 C -0.180 4.180 23 C 0.108 3.892 24 O -0.321 6.321 25 C 0.028 3.972 26 C -0.138 4.138 27 C -0.068 4.068 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.270 0.730 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 -4.182 -4.615 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C -0.029 4.029 4 C -0.006 4.006 5 N -0.154 5.154 6 C -0.469 4.469 7 H 0.102 0.898 8 C -0.159 4.159 9 N -0.495 5.495 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.268 3.732 15 O -0.444 6.444 16 C -0.211 4.211 17 H 0.123 0.877 18 C -0.177 4.177 19 S 0.149 5.851 20 C -0.214 4.214 21 C -0.096 4.096 22 C -0.200 4.200 23 C 0.061 3.939 24 O -0.235 6.235 25 C -0.067 4.067 26 C -0.159 4.159 27 C -0.092 4.092 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.147 0.853 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.230 -5.616 -3.924 10.708 hybrid contribution -1.144 2.723 -0.775 3.053 sum -9.374 -2.893 -4.700 10.878 Atomic orbital electron populations 1.22585 0.83581 1.01482 0.98505 1.88168 1.17263 1.27742 1.95015 1.23091 0.96555 0.84481 0.98726 1.21465 0.89400 1.01810 0.87934 1.43134 1.57916 1.03971 1.10402 1.19329 1.39489 1.00434 0.87650 0.89813 1.25348 0.93853 0.99240 0.97446 1.69874 1.28422 1.22959 1.28223 0.86175 0.78414 0.80781 0.81207 1.19214 1.20506 1.20531 1.19978 0.80577 0.83882 0.88724 1.90610 1.54542 1.62539 1.36706 1.23614 1.01811 0.93509 1.02146 0.87665 1.21387 0.90245 1.04225 1.01860 1.84828 0.98450 1.11247 1.90572 1.21622 0.97886 0.96122 1.05747 1.21089 0.94681 0.96676 0.97117 1.21024 0.94382 0.97241 1.07388 1.18920 0.82066 0.94268 0.98602 1.86037 1.19126 1.30672 1.87709 1.22994 0.99147 0.83540 1.01006 1.20189 0.94031 0.95425 1.06226 1.20491 0.92068 0.97234 0.99447 0.95337 0.90760 0.95231 0.94461 0.93550 0.91667 0.86630 0.91949 0.89099 0.92140 0.92050 0.85124 0.85817 0.92802 0.92801 0.88609 0.85315 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 11.01 101.05 1.11 1.69 16 2 O -0.36 -7.61 9.95 -35.24 -0.35 -7.96 16 3 C 0.05 0.99 6.27 37.16 0.23 1.22 16 4 C 0.12 2.71 5.49 -4.04 -0.02 2.69 16 5 N -0.43 -10.26 2.47 -114.81 -0.28 -10.54 16 6 C -0.34 -7.94 8.16 -14.94 -0.12 -8.06 16 7 H 0.08 1.90 6.55 -52.49 -0.34 1.55 16 8 C 0.05 1.10 5.03 -17.47 -0.09 1.02 16 9 N -0.86 -21.05 11.43 55.50 0.63 -20.42 16 10 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 11 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 14 C 0.48 11.42 5.01 -10.98 -0.05 11.37 16 15 O -0.56 -14.92 15.26 5.53 0.08 -14.83 16 16 C -0.08 -1.60 1.74 -27.88 -0.05 -1.65 16 17 H 0.11 2.10 5.17 -51.92 -0.27 1.83 16 18 C -0.12 -2.17 9.14 37.15 0.34 -1.83 16 19 S -0.10 -1.83 20.61 -107.50 -2.22 -4.04 16 20 C -0.10 -1.86 6.06 -39.08 -0.24 -2.10 16 21 C -0.07 -1.34 8.87 -39.38 -0.35 -1.69 16 22 C -0.18 -2.93 9.03 -39.46 -0.36 -3.29 16 23 C 0.11 1.67 6.69 -39.23 -0.26 1.41 16 24 O -0.32 -4.42 10.50 -19.76 -0.21 -4.62 16 25 C 0.03 0.29 9.81 101.05 0.99 1.28 16 26 C -0.14 -2.07 9.98 -39.46 -0.39 -2.47 16 27 C -0.07 -1.10 9.79 -39.38 -0.39 -1.49 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.06 1.60 7.31 -51.93 -0.38 1.22 16 34 H 0.12 2.75 5.57 -51.93 -0.29 2.46 16 35 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 36 H 0.09 1.78 7.79 -51.93 -0.40 1.37 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.13 2.66 5.09 -52.49 -0.27 2.39 16 40 H 0.12 1.80 6.29 -52.49 -0.33 1.47 16 41 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 42 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -29.00 381.83 -7.70 -36.70 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.44 Total: 8.74 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 0.36 Total: -1.91 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.35 Total: -30.96 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.47 Total: -27.41 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.22 Total: -4.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.00 -7.70 -36.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.453 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds