Wall clock time and date at job start Tue Mar 31 2020 22:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00300 * 2 1 4 4 C 1.53001 * 109.47426 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47031 * 65.00198 * 4 3 2 6 6 C 1.37094 * 120.00198 * 86.30269 * 5 4 3 7 7 H 1.08002 * 120.00017 * 219.94348 * 6 5 4 8 8 C 1.38946 * 119.99753 * 39.95658 * 6 5 4 9 9 N 1.31406 * 120.00263 * 18.85566 * 8 6 5 10 10 Si 1.86806 * 119.99569 * 198.86050 * 8 6 5 11 11 H 1.48504 * 109.47068 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47206 * 119.99616 * 10 8 6 13 13 H 1.48498 * 109.47022 * 239.99431 * 10 8 6 14 14 C 1.34779 * 119.99457 * 266.30695 * 5 4 3 15 15 O 1.21292 * 120.00092 * 359.97438 * 14 5 4 16 16 C 1.50705 * 119.99934 * 179.97438 * 14 5 4 17 17 H 1.09000 * 109.46770 * 324.99614 * 16 14 5 18 18 C 1.52994 * 109.46919 * 85.00046 * 16 14 5 19 19 S 1.81399 * 109.46974 * 204.99952 * 16 14 5 20 20 C 1.76198 * 102.99960 * 70.72566 * 19 16 14 21 21 C 1.38914 * 120.02621 * 4.56015 * 20 19 16 22 22 C 1.38096 * 119.97723 * 179.76982 * 21 20 19 23 23 C 1.38717 * 120.01747 * 0.51157 * 22 21 20 24 24 O 1.36006 * 119.96877 * 179.76418 * 23 22 21 25 25 C 1.42895 * 117.00369 * 359.97438 * 24 23 22 26 26 C 1.38705 * 120.05555 * 359.74556 * 23 22 21 27 27 C 1.38095 * 120.02528 * 359.97438 * 26 23 22 28 28 H 1.08998 * 109.47363 * 60.00384 * 1 2 3 29 29 H 1.09003 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47305 * 300.00233 * 1 2 3 31 31 H 1.08993 * 109.47160 * 59.99601 * 3 2 1 32 32 H 1.09009 * 109.46750 * 299.99963 * 3 2 1 33 33 H 1.08990 * 109.46871 * 304.99945 * 4 3 2 34 34 H 1.09001 * 109.46864 * 184.99086 * 4 3 2 35 35 H 0.97000 * 119.99783 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47241 * 295.16780 * 18 16 14 37 37 H 1.09000 * 109.47583 * 55.16559 * 18 16 14 38 38 H 1.09004 * 109.47310 * 175.16935 * 18 16 14 39 39 H 1.07999 * 120.01367 * 0.03344 * 21 20 19 40 40 H 1.07996 * 119.99292 * 180.23432 * 22 21 20 41 41 H 1.09003 * 109.47029 * 299.99391 * 25 24 23 42 42 H 1.08993 * 109.47354 * 59.99313 * 25 24 23 43 43 H 1.08999 * 109.47426 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.99174 * 179.97438 * 26 23 22 45 45 H 1.07998 * 120.01542 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1934 1.3396 -2.3623 7 1 3.8895 0.9858 -3.3364 8 6 4.8053 2.5804 -2.2336 9 7 5.5002 2.8616 -1.1543 10 14 4.6401 3.8490 -3.5949 11 1 3.8133 3.2901 -4.6946 12 1 3.9888 5.0703 -3.0570 13 1 5.9872 4.1948 -4.1154 14 6 4.1665 -0.7684 -1.3139 15 8 3.9742 -1.4543 -0.3321 16 6 4.6187 -1.4066 -2.6021 17 1 4.1737 -0.8782 -3.4451 18 6 6.1437 -1.3315 -2.7005 19 16 4.0956 -3.1433 -2.6327 20 6 2.3488 -3.0275 -2.8328 21 6 1.7510 -1.7873 -3.0174 22 6 0.3824 -1.6982 -3.1788 23 6 -0.3964 -2.8457 -3.1461 24 8 -1.7447 -2.7563 -3.3005 25 6 -2.2907 -1.4497 -3.4915 26 6 0.1989 -4.0841 -2.9566 27 6 1.5679 -4.1761 -2.8007 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0888 35 1 5.9270 3.7280 -1.0643 36 1 6.4525 -0.2884 -2.7685 37 1 6.5878 -1.7848 -1.8142 38 1 6.4773 -1.8679 -3.5888 39 1 2.3567 -0.8934 -3.0388 40 1 -0.0823 -0.7345 -3.3261 41 1 -2.0528 -0.8269 -2.6291 42 1 -1.8630 -1.0049 -4.3899 43 1 -3.3729 -1.5204 -3.6005 44 1 -0.4085 -4.9768 -2.9309 45 1 2.0312 -5.1404 -2.6527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457181120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:02 Heat of formation + Delta-G solvation = -95.052755 kcal Electronic energy + Delta-G solvation = -29073.360671 eV Core-core repulsion = 25182.789209 eV Total energy + Delta-G solvation = -3890.571463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99278 -40.55414 -38.56229 -38.24359 -36.60657 -34.09504 -33.49840 -32.09452 -31.13061 -30.66544 -28.22461 -27.25081 -26.80957 -25.61674 -23.75149 -23.44044 -22.82904 -21.03150 -19.28015 -18.94808 -18.14768 -17.96919 -17.24362 -17.10057 -16.97564 -16.62924 -16.44527 -16.16876 -16.00850 -15.70108 -15.42635 -14.99773 -14.73099 -14.67545 -14.34978 -13.90647 -13.85252 -13.51527 -13.42455 -13.35755 -13.06108 -12.85049 -12.81681 -12.70050 -12.59325 -12.33443 -12.28273 -12.18598 -12.01747 -11.90082 -11.81177 -11.14154 -11.04744 -10.54613 -10.24305 -10.06453 -9.94697 -9.39295 -8.28253 -8.07996 -6.08688 0.29008 0.34922 0.63865 1.40087 1.43935 1.48981 1.58922 2.12051 2.33328 2.37924 2.70988 2.91735 2.98872 3.12210 3.77715 3.87508 4.02141 4.07720 4.22434 4.26224 4.30543 4.36360 4.36800 4.37239 4.47022 4.50994 4.53563 4.61900 4.63606 4.70522 4.75200 4.79786 4.81255 4.96127 5.01888 5.08955 5.18905 5.26803 5.32458 5.36000 5.48574 5.66845 6.05452 6.36182 6.41308 6.46267 7.15532 7.60261 8.09011 8.74020 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.005110 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.486262 B = 5478.187021 C = 6345.264434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.061 3.939 4 C 0.117 3.883 5 N -0.438 5.438 6 C -0.348 4.348 7 H 0.088 0.912 8 C 0.014 3.986 9 N -0.889 5.889 10 Si 0.972 3.028 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.477 3.523 15 O -0.600 6.600 16 C -0.076 4.076 17 H 0.106 0.894 18 C -0.111 4.111 19 S -0.097 6.097 20 C -0.127 4.127 21 C -0.088 4.088 22 C -0.183 4.183 23 C 0.115 3.885 24 O -0.326 6.326 25 C 0.018 3.982 26 C -0.137 4.137 27 C -0.069 4.069 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.106 0.894 35 H 0.273 0.727 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.126 0.874 44 H 0.157 0.843 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 -4.234 -6.025 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.007 4.007 5 N -0.157 5.157 6 C -0.476 4.476 7 H 0.106 0.894 8 C -0.190 4.190 9 N -0.526 5.526 10 Si 0.796 3.204 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.206 1.206 14 C 0.264 3.736 15 O -0.485 6.485 16 C -0.207 4.207 17 H 0.123 0.877 18 C -0.170 4.170 19 S 0.148 5.852 20 C -0.240 4.240 21 C -0.112 4.112 22 C -0.203 4.203 23 C 0.067 3.933 24 O -0.240 6.240 25 C -0.076 4.076 26 C -0.157 4.157 27 C -0.093 4.093 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.175 0.825 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.390 -5.654 -5.348 12.982 hybrid contribution -0.617 2.712 -0.304 2.798 sum -11.007 -2.942 -5.653 12.718 Atomic orbital electron populations 1.22745 0.81144 1.02182 1.00240 1.88120 1.20025 1.27993 1.95304 1.22882 0.94349 0.84652 0.99794 1.21396 0.91792 1.00423 0.87097 1.43306 1.57568 1.04261 1.10572 1.19526 1.39664 1.00694 0.87710 0.89411 1.26046 0.93146 1.00479 0.99314 1.69970 1.29162 1.23487 1.29977 0.85201 0.78174 0.78273 0.78775 1.18401 1.20345 1.20648 1.20477 0.79940 0.83759 0.89466 1.90569 1.56290 1.63286 1.38332 1.23497 1.02682 0.94451 1.00105 0.87653 1.21347 0.89091 1.03628 1.02909 1.84631 0.99795 1.09750 1.91032 1.21763 0.97454 0.97065 1.07708 1.20965 0.95575 0.95937 0.98743 1.21125 0.93531 0.98439 1.07248 1.19037 0.82929 0.94042 0.97287 1.86047 1.17829 1.32820 1.87258 1.23316 1.00816 0.82104 1.01379 1.20530 0.93777 0.96480 1.04920 1.20759 0.92588 0.97237 0.98675 0.93831 0.90600 0.93120 0.92075 0.93517 0.94292 0.87676 0.91751 0.90571 0.93146 0.88822 0.87458 0.84494 0.92611 0.92155 0.85616 0.82499 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.27 16 2 O -0.40 -16.50 9.95 -148.97 -1.48 -17.99 16 3 C 0.06 2.44 6.27 71.98 0.45 2.89 16 4 C 0.12 5.56 5.49 86.38 0.47 6.04 16 5 N -0.44 -21.28 2.47 -635.53 -1.57 -22.85 16 6 C -0.35 -16.42 8.16 84.04 0.69 -15.73 16 7 H 0.09 4.01 6.55 -2.91 -0.02 3.99 16 8 C 0.01 0.65 5.03 84.93 0.43 1.08 16 9 N -0.89 -44.23 11.43 21.66 0.25 -43.98 16 10 Si 0.97 36.85 29.59 68.60 2.03 38.88 16 11 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 12 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 13 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 14 C 0.48 23.28 5.01 87.66 0.44 23.72 16 15 O -0.60 -33.05 15.26 -3.05 -0.05 -33.09 16 16 C -0.08 -3.13 1.74 29.85 0.05 -3.07 16 17 H 0.11 4.30 5.17 -2.39 -0.01 4.28 16 18 C -0.11 -4.13 9.14 71.98 0.66 -3.48 16 19 S -0.10 -3.69 20.61 -56.49 -1.16 -4.86 16 20 C -0.13 -4.68 6.06 22.60 0.14 -4.54 16 21 C -0.09 -3.30 8.87 22.40 0.20 -3.10 16 22 C -0.18 -5.75 9.03 22.35 0.20 -5.54 16 23 C 0.11 3.28 6.69 22.50 0.15 3.43 16 24 O -0.33 -7.99 10.50 -93.62 -0.98 -8.97 16 25 C 0.02 0.31 9.81 113.37 1.11 1.42 16 26 C -0.14 -3.78 9.98 22.35 0.22 -3.56 16 27 C -0.07 -2.13 9.79 22.40 0.22 -1.91 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.04 2.01 7.31 -2.39 -0.02 1.99 16 34 H 0.11 5.18 5.57 -2.39 -0.01 5.16 16 35 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 36 H 0.08 3.04 7.79 -2.38 -0.02 3.02 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 39 H 0.11 4.47 5.09 -2.91 -0.01 4.46 16 40 H 0.14 3.78 6.29 -2.91 -0.02 3.77 16 41 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 42 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 43 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 45 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -63.52 381.83 4.71 -58.82 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 1.00 Total: 34.14 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 6.68 Total: -0.09 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.32 Total: -66.84 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -2.51 Total: -60.05 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.16 Total: -4.86 kcal Total: -63.52 4.71 -58.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.234 kcal (2) G-P(sol) polarization free energy of solvation -63.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds