Wall clock time and date at job start Tue Mar 31 2020 22:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00388 * 2 1 4 4 C 1.53001 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47310 * 64.99954 * 4 3 2 6 6 C 1.37095 * 119.99887 * 275.27083 * 5 4 3 7 7 H 1.07996 * 120.00060 * 338.93392 * 6 5 4 8 8 C 1.38950 * 120.00103 * 158.93326 * 6 5 4 9 9 N 1.31418 * 119.99680 * 352.22966 * 8 6 5 10 10 Si 1.86800 * 120.00248 * 172.22946 * 8 6 5 11 11 H 1.48505 * 109.47017 * 90.00216 * 10 8 6 12 12 H 1.48504 * 109.47287 * 209.99975 * 10 8 6 13 13 H 1.48493 * 109.47018 * 330.00353 * 10 8 6 14 14 C 1.34775 * 120.00092 * 95.26711 * 5 4 3 15 15 O 1.21295 * 119.99915 * 128.12540 * 14 5 4 16 16 C 1.50696 * 120.00492 * 308.13048 * 14 5 4 17 17 H 1.09003 * 109.46930 * 44.68507 * 16 14 5 18 18 C 1.53001 * 109.47031 * 284.68498 * 16 14 5 19 19 S 1.81405 * 109.47601 * 164.68206 * 16 14 5 20 20 C 1.76196 * 102.99856 * 291.78993 * 19 16 14 21 21 C 1.38926 * 120.02513 * 353.96866 * 20 19 16 22 22 C 1.38090 * 119.96922 * 180.27550 * 21 20 19 23 23 C 1.38712 * 120.02795 * 359.49940 * 22 21 20 24 24 O 1.36011 * 119.97441 * 180.27615 * 23 22 21 25 25 C 1.42898 * 116.99829 * 179.97438 * 24 23 22 26 26 C 1.38705 * 120.05110 * 0.24866 * 23 22 21 27 27 C 1.38097 * 120.02384 * 0.02562 * 26 23 22 28 28 H 1.09005 * 109.46699 * 59.99659 * 1 2 3 29 29 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47308 * 300.00600 * 1 2 3 31 31 H 1.09003 * 109.47342 * 59.99313 * 3 2 1 32 32 H 1.09007 * 109.47410 * 299.99885 * 3 2 1 33 33 H 1.08999 * 109.46766 * 304.99437 * 4 3 2 34 34 H 1.09008 * 109.47252 * 185.00124 * 4 3 2 35 35 H 0.97003 * 119.99694 * 185.00366 * 9 8 6 36 36 H 1.09006 * 109.47002 * 54.73773 * 18 16 14 37 37 H 1.09000 * 109.46989 * 174.73487 * 18 16 14 38 38 H 1.08996 * 109.47323 * 294.73348 * 18 16 14 39 39 H 1.07994 * 120.01194 * 0.05070 * 21 20 19 40 40 H 1.08002 * 119.98522 * 179.77294 * 22 21 20 41 41 H 1.08999 * 109.47430 * 300.00018 * 25 24 23 42 42 H 1.09000 * 109.46949 * 60.00086 * 25 24 23 43 43 H 1.09004 * 109.46869 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.98882 * 180.02562 * 26 23 22 45 45 H 1.08004 * 120.01102 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5638 -1.2508 6 6 3.9947 -0.8019 -1.3695 7 1 4.0208 -1.4205 -0.4847 8 6 3.9791 -1.3901 -2.6283 9 7 3.7936 -0.6490 -3.6976 10 14 4.2218 -3.2342 -2.8006 11 1 2.9033 -3.9149 -2.7395 12 1 4.8709 -3.5285 -4.1035 13 1 5.0840 -3.7253 -1.6959 14 6 4.3650 1.3353 -2.2854 15 8 5.4344 1.1367 -2.8223 16 6 3.4707 2.4449 -2.7753 17 1 3.0780 2.9984 -1.9223 18 6 2.3101 1.8492 -3.5747 19 16 4.4236 3.5658 -3.8366 20 6 5.5401 4.3280 -2.7065 21 6 5.4264 4.0814 -1.3440 22 6 6.2985 4.6839 -0.4589 23 6 7.2941 5.5268 -0.9305 24 8 8.1559 6.1152 -0.0582 25 6 9.1570 6.9708 -0.6129 26 6 7.4117 5.7696 -2.2911 27 6 6.5373 5.1727 -3.1777 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5684 0.8428 34 1 3.9786 2.1764 0.0902 35 1 3.7102 -1.0671 -4.5689 36 1 1.7938 1.1061 -2.9668 37 1 1.6137 2.6414 -3.8494 38 1 2.6960 1.3756 -4.4774 39 1 4.6542 3.4217 -0.9771 40 1 6.2080 4.4953 0.6007 41 1 9.7808 6.4013 -1.3018 42 1 8.6781 7.7901 -1.1492 43 1 9.7752 7.3742 0.1891 44 1 8.1875 6.4257 -2.6572 45 1 6.6293 5.3616 -4.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457181121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:07 Heat of formation + Delta-G solvation = -57.223430 kcal Electronic energy + Delta-G solvation = -28524.665148 eV Core-core repulsion = 24635.734088 eV Total energy + Delta-G solvation = -3888.931060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88442 -38.71241 -37.17812 -37.01629 -34.20455 -32.34334 -31.63904 -30.91161 -30.01020 -28.75066 -27.28443 -25.88859 -24.91289 -23.67664 -22.50941 -22.06130 -21.76329 -19.20851 -18.17768 -17.02359 -16.82790 -16.10295 -16.04596 -15.70146 -15.64111 -15.08475 -14.87288 -14.71650 -14.34375 -14.28239 -13.72712 -13.61272 -13.52372 -13.29413 -12.78141 -12.58570 -12.42199 -12.09633 -11.91254 -11.71773 -11.31485 -11.29334 -11.16070 -11.11164 -10.90698 -10.81128 -10.75512 -10.59263 -10.51766 -10.34080 -10.00584 -9.63550 -9.10886 -8.99097 -8.86113 -8.73209 -8.19421 -7.25892 -6.63395 -6.03722 -3.51429 1.49209 1.53884 2.13572 2.97906 3.33124 3.34172 3.41805 3.44096 3.89477 3.96221 4.30168 4.42478 4.86089 4.93929 4.95900 5.06404 5.09658 5.34057 5.37580 5.38000 5.52080 5.55192 5.58965 5.60849 5.69244 5.73775 5.81376 5.86736 5.89150 5.97353 6.05594 6.15089 6.21365 6.24348 6.44680 6.48245 6.52931 6.57408 6.64427 6.82148 7.20900 7.47197 7.67965 7.75175 8.19878 9.11553 9.35371 9.66819 10.13863 11.08429 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.003937 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.356769 B = 7110.253480 C = 7552.607025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.042 3.958 4 C 0.122 3.878 5 N -0.514 5.514 6 C -0.270 4.270 7 H 0.083 0.917 8 C 0.024 3.976 9 N -0.873 5.873 10 Si 0.924 3.076 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.551 3.449 15 O -0.496 6.496 16 C -0.090 4.090 17 H 0.079 0.921 18 C -0.100 4.100 19 S -0.086 6.086 20 C -0.096 4.096 21 C -0.093 4.093 22 C -0.127 4.127 23 C 0.107 3.893 24 O -0.320 6.320 25 C 0.029 3.971 26 C -0.189 4.189 27 C -0.069 4.069 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.128 0.872 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 13.104 5.090 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.037 4.037 4 C -0.003 4.003 5 N -0.242 5.242 6 C -0.398 4.398 7 H 0.101 0.899 8 C -0.179 4.179 9 N -0.514 5.514 10 Si 0.753 3.247 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.336 3.664 15 O -0.368 6.368 16 C -0.223 4.223 17 H 0.097 0.903 18 C -0.159 4.159 19 S 0.160 5.840 20 C -0.209 4.209 21 C -0.117 4.117 22 C -0.148 4.148 23 C 0.060 3.940 24 O -0.234 6.234 25 C -0.067 4.067 26 C -0.209 4.209 27 C -0.093 4.093 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.145 0.855 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.067 12.862 3.530 13.338 hybrid contribution -0.186 -0.833 0.997 1.313 sum -0.253 12.029 4.528 12.855 Atomic orbital electron populations 1.22650 0.83130 1.01975 0.98749 1.88143 1.17573 1.26719 1.94951 1.23305 0.96489 0.85343 0.98600 1.21455 0.90826 0.97274 0.90794 1.42752 1.65484 1.05288 1.10627 1.19188 1.48016 0.79531 0.93028 0.89937 1.24987 0.98343 0.99056 0.95469 1.69472 1.48702 1.34660 0.98585 0.85963 0.77788 0.83528 0.77410 1.21165 1.21428 1.20155 1.18755 0.85313 0.81255 0.81090 1.90484 1.21927 1.67136 1.57301 1.24121 1.00701 0.97844 0.99621 0.90270 1.21353 0.93722 0.99075 1.01752 1.84982 1.38462 1.44663 1.15870 1.21730 1.01113 1.01510 0.96550 1.21068 0.99586 0.99179 0.91829 1.20245 0.95426 0.98867 1.00231 1.18886 0.91501 0.95152 0.88508 1.86065 1.42362 1.60354 1.34632 1.22994 0.90168 0.93066 1.00432 1.21053 1.02569 1.05113 0.92179 1.20496 0.93205 0.96235 0.99354 0.94768 0.90301 0.95321 0.94693 0.93646 0.90850 0.91969 0.92461 0.90125 0.94279 0.89774 0.85559 0.85198 0.92763 0.92880 0.88578 0.85458 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.74 9.93 -35.23 -0.35 -7.09 16 3 C 0.04 0.70 6.14 37.16 0.23 0.93 16 4 C 0.12 2.32 5.48 -4.04 -0.02 2.29 16 5 N -0.51 -12.34 2.60 -114.82 -0.30 -12.64 16 6 C -0.27 -7.19 8.84 -14.93 -0.13 -7.32 16 7 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 8 C 0.02 0.65 5.12 -17.46 -0.09 0.56 16 9 N -0.87 -24.25 8.66 55.50 0.48 -23.77 16 10 Si 0.92 22.00 29.56 -169.99 -5.03 16.98 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.55 13.50 2.43 -10.99 -0.03 13.47 16 15 O -0.50 -14.33 15.30 5.54 0.08 -14.25 16 16 C -0.09 -1.84 1.75 -27.88 -0.05 -1.89 16 17 H 0.08 1.45 5.39 -51.92 -0.28 1.17 16 18 C -0.10 -2.03 7.88 37.16 0.29 -1.74 16 19 S -0.09 -1.69 20.53 -107.50 -2.21 -3.90 16 20 C -0.10 -1.77 5.98 -39.07 -0.23 -2.00 16 21 C -0.09 -1.65 8.81 -39.38 -0.35 -2.00 16 22 C -0.13 -2.04 9.98 -39.46 -0.39 -2.43 16 23 C 0.11 1.61 6.69 -39.23 -0.26 1.35 16 24 O -0.32 -4.30 10.50 -19.77 -0.21 -4.51 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 C -0.19 -2.69 9.03 -39.46 -0.36 -3.04 16 27 C -0.07 -1.10 9.79 -39.38 -0.39 -1.49 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.78 5.68 -51.93 -0.30 0.48 16 33 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 34 H 0.06 1.04 5.66 -51.92 -0.29 0.74 16 35 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 36 H 0.08 1.76 7.54 -51.93 -0.39 1.36 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.92 7.22 -51.93 -0.38 1.54 16 39 H 0.13 2.26 2.84 -52.49 -0.15 2.11 16 40 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.13 1.41 6.29 -52.49 -0.33 1.08 16 45 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -33.10 372.28 -7.84 -40.95 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.26 Total: 3.10 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 0.33 Total: -0.48 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.18 Total: -36.42 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.47 Total: -25.85 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.10 -7.84 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.276 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds