Wall clock time and date at job start Tue Mar 31 2020 22:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99624 * 2 1 4 4 C 1.53003 * 109.46804 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47448 * 65.49312 * 4 3 2 6 6 C 1.37091 * 120.00376 * 93.51231 * 5 4 3 7 7 H 1.08002 * 119.99991 * 218.32253 * 6 5 4 8 8 C 1.38953 * 119.99816 * 38.32892 * 6 5 4 9 9 N 1.31411 * 119.99964 * 212.04118 * 8 6 5 10 10 Si 1.86796 * 119.99833 * 32.03840 * 8 6 5 11 11 H 1.48498 * 109.47121 * 94.89505 * 10 8 6 12 12 H 1.48503 * 109.47179 * 214.89033 * 10 8 6 13 13 H 1.48497 * 109.47292 * 334.88980 * 10 8 6 14 14 C 1.34783 * 119.99373 * 273.51995 * 5 4 3 15 15 O 1.21290 * 120.00398 * 354.73814 * 14 5 4 16 16 C 1.50704 * 119.99452 * 174.73933 * 14 5 4 17 17 H 1.08998 * 109.47078 * 309.68862 * 16 14 5 18 18 C 1.53001 * 109.47015 * 69.69779 * 16 14 5 19 19 O 1.42907 * 109.46698 * 189.69114 * 16 14 5 20 20 C 1.36005 * 116.99741 * 154.91007 * 19 16 14 21 21 C 1.38712 * 119.97627 * 183.51046 * 20 19 16 22 22 C 1.38084 * 120.02861 * 179.76572 * 21 20 19 23 23 C 1.38922 * 119.97159 * 0.52828 * 22 21 20 24 24 S 1.76204 * 120.02591 * 179.74439 * 23 22 21 25 25 C 1.81401 * 102.99892 * 359.97438 * 24 23 22 26 26 C 1.38928 * 119.95187 * 359.72341 * 23 22 21 27 27 C 1.38088 * 119.97268 * 359.97438 * 26 23 22 28 28 H 1.09004 * 109.47406 * 300.00388 * 1 2 3 29 29 H 1.09002 * 109.47086 * 60.00103 * 1 2 3 30 30 H 1.08999 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47472 * 59.99821 * 3 2 1 32 32 H 1.08998 * 109.47399 * 299.99862 * 3 2 1 33 33 H 1.09001 * 109.46848 * 305.48899 * 4 3 2 34 34 H 1.09004 * 109.46952 * 185.49204 * 4 3 2 35 35 H 0.97001 * 119.99824 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47744 * 63.86058 * 18 16 14 37 37 H 1.09006 * 109.46582 * 183.86486 * 18 16 14 38 38 H 1.08998 * 109.46715 * 303.85095 * 18 16 14 39 39 H 1.08000 * 119.98333 * 0.02562 * 21 20 19 40 40 H 1.07998 * 120.01700 * 180.25620 * 22 21 20 41 41 H 1.09001 * 109.46574 * 300.00133 * 25 24 23 42 42 H 1.09000 * 109.47059 * 59.99943 * 25 24 23 43 43 H 1.08993 * 109.47160 * 180.02562 * 25 24 23 44 44 H 1.07999 * 120.01203 * 179.97438 * 26 23 22 45 45 H 1.08003 * 119.98773 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9775 0.5748 -1.2558 6 6 4.3389 1.3687 -2.3133 7 1 4.0776 1.0788 -3.3203 8 6 5.0416 2.5465 -2.0896 9 7 4.8650 3.5780 -2.8844 10 14 6.2371 2.6633 -0.6591 11 1 7.6088 2.3491 -1.1334 12 1 6.2092 4.0396 -0.1019 13 1 5.8437 1.6944 0.3952 14 6 4.0289 -0.7671 -1.3720 15 8 3.8015 -1.4684 -0.4089 16 6 4.3689 -1.3959 -2.6986 17 1 3.7401 -0.9641 -3.4772 18 6 5.8400 -1.1320 -3.0260 19 8 4.1417 -2.8052 -2.6299 20 6 3.8838 -3.4468 -3.8010 21 6 3.5823 -4.8008 -3.7976 22 6 3.3155 -5.4522 -4.9855 23 6 3.3600 -4.7535 -6.1854 24 16 3.0264 -5.5850 -7.7028 25 6 2.6912 -7.2864 -7.1706 26 6 3.6672 -3.3987 -6.1882 27 6 3.9275 -2.7479 -4.9984 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8501 0.5614 0.8377 34 1 3.9783 2.1758 0.0990 35 1 5.3558 4.4000 -2.7284 36 1 6.4709 -1.6222 -2.2847 37 1 6.0684 -1.5271 -4.0160 38 1 6.0285 -0.0585 -3.0110 39 1 3.5520 -5.3447 -2.8651 40 1 3.0767 -6.5055 -4.9823 41 1 3.5662 -7.6856 -6.6576 42 1 1.8378 -7.2936 -6.4925 43 1 2.4687 -7.9024 -8.0418 44 1 3.7024 -2.8546 -7.1205 45 1 4.1668 -1.6947 -5.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:56 Heat of formation + Delta-G solvation = -71.738356 kcal Electronic energy + Delta-G solvation = -27854.919135 eV Core-core repulsion = 23965.358661 eV Total energy + Delta-G solvation = -3889.560474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15079 -38.84544 -37.36037 -36.70195 -34.84219 -32.14384 -31.86658 -31.09273 -29.88358 -28.91734 -28.84329 -25.90715 -25.12124 -23.97564 -22.89150 -22.53555 -21.40315 -19.11001 -18.24560 -17.55274 -17.10871 -16.21709 -15.80865 -15.64805 -15.46953 -14.99046 -14.82076 -14.67007 -14.61518 -14.40566 -14.00367 -13.96187 -13.50897 -13.48717 -13.14664 -12.93878 -12.71279 -12.41252 -12.36117 -12.09481 -11.87023 -11.80072 -11.58835 -11.41456 -11.20181 -11.03865 -10.79097 -10.57511 -10.49613 -10.44477 -10.29044 -9.98724 -9.24858 -9.09324 -8.99607 -8.96831 -8.46090 -7.81938 -7.17210 -6.67963 -4.15992 1.34064 1.40907 1.47436 2.34524 3.01164 3.15851 3.23523 3.32499 3.68916 3.77924 4.04409 4.36092 4.46408 4.77139 4.83752 4.84299 4.88738 4.91092 5.24908 5.39640 5.43185 5.53401 5.57179 5.59892 5.65451 5.70885 5.73606 5.88684 5.91377 5.98114 5.99509 6.01452 6.10282 6.22094 6.25018 6.30344 6.40067 6.49435 6.59714 6.73014 6.85039 7.24243 7.71897 7.73112 7.95022 8.14090 8.85934 9.27823 9.66079 10.42308 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003140 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.873479 B = 8914.135488 C = 9870.612681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.459 5.459 6 C -0.362 4.362 7 H 0.100 0.900 8 C 0.078 3.922 9 N -0.838 5.838 10 Si 0.847 3.153 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.495 3.505 15 O -0.558 6.558 16 C 0.085 3.915 17 H 0.091 0.909 18 C -0.174 4.174 19 O -0.287 6.287 20 C 0.146 3.854 21 C -0.140 4.140 22 C -0.092 4.092 23 C -0.134 4.134 24 S -0.132 6.132 25 C -0.142 4.142 26 C -0.054 4.054 27 C -0.195 4.195 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.276 0.724 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -11.500 -4.885 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.030 4.030 4 C -0.001 4.001 5 N -0.182 5.182 6 C -0.488 4.488 7 H 0.118 0.882 8 C -0.131 4.131 9 N -0.471 5.471 10 Si 0.672 3.328 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.177 1.177 14 C 0.282 3.718 15 O -0.439 6.439 16 C 0.026 3.974 17 H 0.109 0.891 18 C -0.231 4.231 19 O -0.199 6.199 20 C 0.098 3.902 21 C -0.160 4.160 22 C -0.116 4.116 23 C -0.246 4.246 24 S 0.107 5.893 25 C -0.310 4.310 26 C -0.077 4.077 27 C -0.215 4.215 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.146 0.854 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.760 -11.544 -5.428 13.299 hybrid contribution 0.460 0.391 1.652 1.759 sum -3.300 -11.153 -3.776 12.228 Atomic orbital electron populations 1.22645 0.82833 1.01890 0.99065 1.88131 1.17961 1.27374 1.95154 1.23022 0.95306 0.84924 0.99776 1.21606 0.91374 0.98312 0.88803 1.43371 1.58720 1.03417 1.12725 1.18899 1.37728 1.04065 0.88122 0.88241 1.25280 0.96431 0.94438 0.96988 1.69934 1.36579 1.01421 1.39201 0.87387 0.83145 0.78329 0.83983 1.19969 1.20625 1.17685 1.19678 0.80534 0.82997 0.88551 1.90595 1.52104 1.61871 1.39328 1.22093 0.98569 0.78040 0.98692 0.89127 1.22323 0.93760 1.05920 1.01111 1.86229 1.83776 1.22361 1.27569 1.19168 0.93401 0.92227 0.85452 1.20307 1.04935 0.92175 0.98601 1.20875 1.00535 0.99225 0.90938 1.21397 1.09943 0.97375 0.95883 1.85319 1.88302 1.06009 1.09647 1.23616 1.05198 0.96137 1.06080 1.20524 0.97261 0.92002 0.97951 1.21403 1.07004 1.01326 0.91748 0.94960 0.94691 0.90375 0.93853 0.92426 0.90649 0.90153 0.91353 0.92122 0.92419 0.87487 0.84874 0.85623 0.89885 0.89863 0.87718 0.85370 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.58 9.33 -45.25 -0.42 -8.00 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.12 2.64 4.12 -4.04 -0.02 2.63 16 5 N -0.46 -10.65 2.13 -114.81 -0.24 -10.90 16 6 C -0.36 -8.64 6.99 -14.93 -0.10 -8.74 16 7 H 0.10 2.46 6.97 -52.49 -0.37 2.10 16 8 C 0.08 1.89 5.05 -17.47 -0.09 1.81 16 9 N -0.84 -21.25 13.96 55.50 0.77 -20.48 16 10 Si 0.85 18.51 26.29 -169.99 -4.47 14.04 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.25 -5.52 5.84 56.52 0.33 -5.19 16 14 C 0.49 11.67 6.55 -10.98 -0.07 11.60 16 15 O -0.56 -14.64 15.29 -20.53 -0.31 -14.95 16 16 C 0.08 1.72 1.87 -27.88 -0.05 1.67 16 17 H 0.09 1.78 5.39 -51.93 -0.28 1.50 16 18 C -0.17 -3.19 9.06 37.16 0.34 -2.86 16 19 O -0.29 -5.78 9.35 -39.48 -0.37 -6.15 16 20 C 0.15 2.49 6.60 -39.23 -0.26 2.23 16 21 C -0.14 -2.08 9.98 -39.46 -0.39 -2.47 16 22 C -0.09 -1.18 9.36 -39.38 -0.37 -1.55 16 23 C -0.13 -1.77 6.11 -39.07 -0.24 -2.01 16 24 S -0.13 -1.46 22.56 -107.50 -2.43 -3.89 16 25 C -0.14 -1.06 9.15 101.05 0.92 -0.13 16 26 C -0.05 -0.76 9.79 -39.38 -0.39 -1.14 16 27 C -0.19 -3.02 8.30 -39.46 -0.33 -3.35 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.67 7.46 -51.93 -0.39 1.29 16 34 H 0.08 1.68 4.55 -51.93 -0.24 1.44 16 35 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.92 7.00 -51.93 -0.36 0.55 16 38 H 0.11 2.11 6.02 -51.93 -0.31 1.80 16 39 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.13 1.25 5.87 -52.49 -0.31 0.95 16 41 H 0.08 0.57 7.75 -51.92 -0.40 0.17 16 42 H 0.08 0.58 7.74 -51.92 -0.40 0.18 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.14 2.15 5.43 -52.48 -0.28 1.87 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -29.55 374.77 -7.88 -37.43 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.35 Total: 6.81 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.30 Total: 0.45 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.53 Total: -31.37 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.11 Total: -29.11 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.47 Total: 14.04 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.43 Total: -3.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.55 -7.88 -37.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.313 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds