Wall clock time and date at job start Tue Mar 31 2020 22:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99869 * 2 1 4 4 N 1.46505 * 109.46752 * 124.99587 * 3 2 1 5 5 C 1.46494 * 120.00223 * 279.83948 * 4 3 2 6 6 C 1.50699 * 109.47422 * 275.00518 * 5 4 3 7 7 H 1.07997 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00105 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00026 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99952 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46726 * 89.99764 * 10 8 6 12 12 H 1.48498 * 109.47171 * 209.99710 * 10 8 6 13 13 H 1.48499 * 109.47005 * 329.99963 * 10 8 6 14 14 S 1.65600 * 119.99455 * 99.84666 * 4 3 2 15 15 O 1.42093 * 106.40491 * 345.02134 * 14 4 3 16 16 O 1.42112 * 106.39886 * 212.09966 * 14 4 3 17 17 C 1.76200 * 107.21705 * 98.56575 * 14 4 3 18 18 C 1.38295 * 119.94620 * 115.36813 * 17 14 4 19 19 C 1.38119 * 120.05623 * 180.02562 * 18 17 14 20 20 C 1.38747 * 119.94422 * 359.97438 * 19 18 17 21 21 O 1.35908 * 120.05425 * 180.02562 * 20 19 18 22 22 C 1.42897 * 116.99898 * 359.97438 * 21 20 19 23 23 C 1.53009 * 109.46819 * 180.02562 * 22 21 20 24 24 C 1.38708 * 119.89147 * 0.27185 * 20 19 18 25 25 C 1.38173 * 119.94201 * 359.49911 * 24 20 19 26 26 C 1.50700 * 119.97395 * 180.22983 * 25 24 20 27 27 H 1.08001 * 119.99951 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00257 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00257 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46819 * 5.00117 * 3 2 1 31 31 H 1.08998 * 109.47262 * 244.99812 * 3 2 1 32 32 H 1.09005 * 109.47291 * 35.00495 * 5 4 3 33 33 H 1.09003 * 109.47191 * 155.00308 * 5 4 3 34 34 H 0.97005 * 120.00252 * 180.02562 * 9 8 6 35 35 H 1.07998 * 119.96764 * 359.97438 * 18 17 14 36 36 H 1.07998 * 120.02998 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47005 * 60.00289 * 22 21 20 38 38 H 1.08995 * 109.47521 * 300.00308 * 22 21 20 39 39 H 1.08998 * 109.47064 * 299.99915 * 23 22 21 40 40 H 1.09001 * 109.46686 * 60.00036 * 23 22 21 41 41 H 1.08998 * 109.46673 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.03198 * 179.72453 * 24 20 19 43 43 H 1.08998 * 109.47185 * 264.07391 * 26 25 24 44 44 H 1.09004 * 109.46987 * 24.06893 * 26 25 24 45 45 H 1.08992 * 109.47137 * 144.06601 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5056 1.6595 2.4734 6 6 2.4785 3.1563 2.6466 7 1 2.7937 3.7992 1.8381 8 6 2.0513 3.7049 3.8372 9 7 2.0281 5.0111 3.9885 10 14 1.5068 2.5928 5.2359 11 1 2.6753 2.2663 6.0922 12 1 0.4764 3.2879 6.0485 13 1 0.9359 1.3402 4.6788 14 16 4.5968 0.9920 0.8936 15 8 4.6924 0.3845 -0.3874 16 8 5.0561 0.3690 2.0855 17 6 5.4451 2.5321 0.7785 18 6 6.3787 2.8793 1.7378 19 6 7.0446 4.0862 1.6501 20 6 6.7764 4.9503 0.5982 21 8 7.4307 6.1383 0.5095 22 6 8.3815 6.4334 1.5346 23 6 9.0107 7.8023 1.2678 24 6 5.8358 4.6020 -0.3599 25 6 5.1758 3.3914 -0.2703 26 6 4.1576 3.0100 -1.3137 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 1.4993 1.2607 2.6015 33 1 3.1684 1.2195 3.2186 34 1 1.7278 5.3971 4.8262 35 1 6.5867 2.2065 2.5566 36 1 7.7733 4.3572 2.3997 37 1 9.1596 5.6701 1.5390 38 1 7.8801 6.4467 2.5023 39 1 9.5120 7.7894 0.3000 40 1 8.2322 8.5653 1.2636 41 1 9.7363 8.0272 2.0494 42 1 5.6221 5.2749 -1.1772 43 1 3.1598 3.2682 -0.9591 44 1 4.3652 3.5490 -2.2382 45 1 4.2113 1.9373 -1.4987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490103258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:31 Heat of formation + Delta-G solvation = -59.108983 kcal Electronic energy + Delta-G solvation = -28635.707022 eV Core-core repulsion = 24746.694198 eV Total energy + Delta-G solvation = -3889.012824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.08125 -37.75361 -36.92870 -36.47043 -35.33984 -33.19450 -32.47637 -32.07630 -31.94246 -29.68698 -28.20814 -26.92401 -24.97357 -23.65871 -22.85482 -21.83896 -21.04169 -19.76611 -18.40356 -17.86276 -17.22207 -17.00631 -16.65177 -16.22884 -16.14097 -15.59284 -14.64607 -14.31518 -14.24616 -13.99387 -13.84503 -13.70493 -13.18063 -13.11980 -13.06273 -12.86219 -12.63022 -12.54745 -12.37435 -12.18300 -11.78744 -11.74255 -11.65203 -11.50417 -11.41770 -11.20576 -10.99768 -10.77555 -10.74432 -10.66371 -10.38557 -10.27922 -10.20099 -9.60965 -9.10699 -8.64740 -8.57878 -8.35113 -8.11435 -6.14630 -4.15004 0.95539 1.30254 1.58107 2.56388 3.13246 3.25770 3.32592 3.36321 3.52526 3.82329 4.28229 4.35294 4.73773 4.80173 4.87273 4.93952 5.06284 5.12229 5.18108 5.24746 5.27317 5.33015 5.37422 5.51441 5.58385 5.63631 5.65042 5.82546 5.86557 5.88959 6.02412 6.11458 6.16105 6.22245 6.31921 6.39944 6.45701 6.51765 6.83938 6.88450 6.89766 6.96081 7.11820 7.35702 7.45395 7.53863 8.41278 8.90306 9.45707 10.97719 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.005083 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.412633 B = 5507.717683 C = 7032.766055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.972 5.972 5 C 0.215 3.785 6 C -0.539 4.539 7 H 0.082 0.918 8 C 0.077 3.923 9 N -0.893 5.893 10 Si 0.865 3.135 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.262 1.262 14 S 2.696 3.304 15 O -0.975 6.975 16 O -0.967 6.967 17 C -0.695 4.695 18 C 0.032 3.968 19 C -0.234 4.234 20 C 0.182 3.818 21 O -0.314 6.314 22 C 0.050 3.950 23 C -0.151 4.151 24 C -0.176 4.176 25 C 0.064 3.936 26 C -0.178 4.178 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.264 0.736 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 -0.797 -8.016 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.182 4.182 3 C 0.015 3.985 4 N -0.809 5.809 5 C 0.092 3.908 6 C -0.578 4.578 7 H 0.100 0.900 8 C -0.126 4.126 9 N -0.531 5.531 10 Si 0.691 3.309 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.186 1.186 14 S 2.788 3.212 15 O -0.965 6.965 16 O -0.957 6.957 17 C -0.782 4.782 18 C 0.012 3.988 19 C -0.253 4.253 20 C 0.136 3.864 21 O -0.227 6.227 22 C -0.025 4.025 23 C -0.208 4.208 24 C -0.195 4.195 25 C 0.063 3.937 26 C -0.234 4.234 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.982 -1.287 -8.064 11.419 hybrid contribution -0.179 0.515 1.333 1.440 sum 7.803 -0.772 -6.731 10.334 Atomic orbital electron populations 1.23806 0.95796 1.01704 1.01124 1.23419 0.96361 0.99181 0.99251 1.20648 0.93343 0.95704 0.88843 1.57089 1.22706 1.85497 1.15624 1.19613 0.96421 0.97149 0.77618 1.21444 1.45166 0.89924 1.01296 0.90040 1.24826 0.94854 0.94796 0.98117 1.69898 1.47047 1.10105 1.26005 0.87014 0.79248 0.81523 0.83080 1.19797 1.21053 1.18605 1.01629 0.72729 0.73925 0.72906 1.93462 1.86547 1.74970 1.41556 1.93509 1.80580 1.73766 1.47879 1.30570 1.16602 1.25701 1.05313 1.20621 0.89404 0.94639 0.94108 1.21193 1.06646 0.96903 1.00600 1.19115 0.90163 0.83825 0.93308 1.86059 1.52962 1.34340 1.49381 1.22847 0.90780 0.98077 0.90761 1.21771 1.00979 0.95204 1.02835 1.20255 0.99860 0.98139 1.01237 1.19133 0.91623 0.91070 0.91895 1.21905 0.98499 1.05369 0.97611 0.88844 0.88232 0.87610 0.89247 0.88904 0.94047 0.94077 0.92594 0.84076 0.85096 0.91903 0.91464 0.91655 0.91371 0.90382 0.84854 0.88584 0.90099 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.16 -2.46 9.78 -36.02 -0.35 -2.81 16 3 C 0.14 2.31 4.38 -5.19 -0.02 2.29 16 4 N -0.97 -19.21 2.71 -116.95 -0.32 -19.52 16 5 C 0.22 4.94 4.48 -5.20 -0.02 4.92 16 6 C -0.54 -14.18 9.94 -34.44 -0.34 -14.52 16 7 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 10 Si 0.86 20.66 27.47 -169.99 -4.67 16.00 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 14 S 2.70 53.13 5.07 -107.50 -0.54 52.58 16 15 O -0.98 -18.71 14.33 -57.17 -0.82 -19.53 16 16 O -0.97 -21.22 15.72 -57.17 -0.90 -22.12 16 17 C -0.69 -13.31 5.91 -39.56 -0.23 -13.54 16 18 C 0.03 0.59 9.54 -39.60 -0.38 0.21 16 19 C -0.23 -3.90 9.04 -39.44 -0.36 -4.26 16 20 C 0.18 3.06 6.69 -39.22 -0.26 2.80 16 21 O -0.31 -4.71 10.14 -19.45 -0.20 -4.90 16 22 C 0.05 0.57 5.46 37.16 0.20 0.77 16 23 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 24 C -0.18 -2.96 9.62 -39.43 -0.38 -3.34 16 25 C 0.06 1.13 5.87 -104.65 -0.61 0.52 16 26 C -0.18 -2.63 7.90 36.01 0.28 -2.35 16 27 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.09 1.47 7.79 -51.93 -0.40 1.06 16 31 H 0.09 1.36 4.28 -51.93 -0.22 1.14 16 32 H 0.04 0.93 7.16 -51.93 -0.37 0.56 16 33 H 0.04 0.98 6.48 -51.93 -0.34 0.64 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.14 2.46 7.33 -52.49 -0.38 2.07 16 36 H 0.13 1.79 6.30 -52.49 -0.33 1.46 16 37 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 38 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 43 H 0.10 1.40 6.57 -51.93 -0.34 1.06 16 44 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 45 H 0.11 1.61 4.00 -51.93 -0.21 1.41 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -32.40 374.90 -9.15 -41.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.35 Total: 5.95 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -1.78 Total: -30.31 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.46 Total: -44.87 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.92 Total: -46.55 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 53.13 SS G_CDS: -0.54 Total: 52.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.40 -9.15 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490103258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.555 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds