Wall clock time and date at job start Tue Mar 31 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99869 * 2 1 4 4 N 1.46505 * 109.46752 * 124.99587 * 3 2 1 5 5 C 1.46494 * 120.00223 * 279.83948 * 4 3 2 6 6 C 1.50699 * 109.47422 * 275.00518 * 5 4 3 7 7 H 1.07997 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00105 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00026 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99952 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46726 * 89.99764 * 10 8 6 12 12 H 1.48498 * 109.47171 * 209.99710 * 10 8 6 13 13 H 1.48499 * 109.47005 * 329.99963 * 10 8 6 14 14 S 1.65600 * 119.99455 * 99.84666 * 4 3 2 15 15 O 1.42093 * 106.40491 * 345.02134 * 14 4 3 16 16 O 1.42112 * 106.39886 * 212.09966 * 14 4 3 17 17 C 1.76200 * 107.21705 * 98.56575 * 14 4 3 18 18 C 1.38295 * 119.94620 * 115.36813 * 17 14 4 19 19 C 1.38119 * 120.05623 * 180.02562 * 18 17 14 20 20 C 1.38747 * 119.94422 * 359.97438 * 19 18 17 21 21 O 1.35908 * 120.05425 * 180.02562 * 20 19 18 22 22 C 1.42897 * 116.99898 * 359.97438 * 21 20 19 23 23 C 1.53009 * 109.46819 * 180.02562 * 22 21 20 24 24 C 1.38708 * 119.89147 * 0.27185 * 20 19 18 25 25 C 1.38173 * 119.94201 * 359.49911 * 24 20 19 26 26 C 1.50700 * 119.97395 * 180.22983 * 25 24 20 27 27 H 1.08001 * 119.99951 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00257 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00257 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46819 * 5.00117 * 3 2 1 31 31 H 1.08998 * 109.47262 * 244.99812 * 3 2 1 32 32 H 1.09005 * 109.47291 * 35.00495 * 5 4 3 33 33 H 1.09003 * 109.47191 * 155.00308 * 5 4 3 34 34 H 0.97005 * 120.00252 * 180.02562 * 9 8 6 35 35 H 1.07998 * 119.96764 * 359.97438 * 18 17 14 36 36 H 1.07998 * 120.02998 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47005 * 60.00289 * 22 21 20 38 38 H 1.08995 * 109.47521 * 300.00308 * 22 21 20 39 39 H 1.08998 * 109.47064 * 299.99915 * 23 22 21 40 40 H 1.09001 * 109.46686 * 60.00036 * 23 22 21 41 41 H 1.08998 * 109.46673 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.03198 * 179.72453 * 24 20 19 43 43 H 1.08998 * 109.47185 * 264.07391 * 26 25 24 44 44 H 1.09004 * 109.46987 * 24.06893 * 26 25 24 45 45 H 1.08992 * 109.47137 * 144.06601 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5056 1.6595 2.4734 6 6 2.4785 3.1563 2.6466 7 1 2.7937 3.7992 1.8381 8 6 2.0513 3.7049 3.8372 9 7 2.0281 5.0111 3.9885 10 14 1.5068 2.5928 5.2359 11 1 2.6753 2.2663 6.0922 12 1 0.4764 3.2879 6.0485 13 1 0.9359 1.3402 4.6788 14 16 4.5968 0.9920 0.8936 15 8 4.6924 0.3845 -0.3874 16 8 5.0561 0.3690 2.0855 17 6 5.4451 2.5321 0.7785 18 6 6.3787 2.8793 1.7378 19 6 7.0446 4.0862 1.6501 20 6 6.7764 4.9503 0.5982 21 8 7.4307 6.1383 0.5095 22 6 8.3815 6.4334 1.5346 23 6 9.0107 7.8023 1.2678 24 6 5.8358 4.6020 -0.3599 25 6 5.1758 3.3914 -0.2703 26 6 4.1576 3.0100 -1.3137 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 1.4993 1.2607 2.6015 33 1 3.1684 1.2195 3.2186 34 1 1.7278 5.3971 4.8262 35 1 6.5867 2.2065 2.5566 36 1 7.7733 4.3572 2.3997 37 1 9.1596 5.6701 1.5390 38 1 7.8801 6.4467 2.5023 39 1 9.5120 7.7894 0.3000 40 1 8.2322 8.5653 1.2636 41 1 9.7363 8.0272 2.0494 42 1 5.6221 5.2749 -1.1772 43 1 3.1598 3.2682 -0.9591 44 1 4.3652 3.5490 -2.2382 45 1 4.2113 1.9373 -1.4987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490103258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:30 Heat of formation + Delta-G solvation = -79.534844 kcal Electronic energy + Delta-G solvation = -28636.592754 eV Core-core repulsion = 24746.694198 eV Total energy + Delta-G solvation = -3889.898555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30769 -39.00257 -38.43757 -37.99770 -36.93693 -34.92929 -33.77560 -33.54506 -33.06527 -30.88271 -29.95514 -28.23010 -26.43930 -24.62388 -24.26848 -23.62351 -22.24036 -20.98000 -19.87849 -19.10873 -18.98896 -18.60031 -18.25687 -17.63987 -17.17065 -17.00743 -16.18686 -15.91156 -15.59355 -15.45240 -15.08041 -14.96632 -14.61168 -14.42379 -14.32621 -14.27649 -13.99179 -13.81628 -13.67061 -13.39254 -13.33320 -13.24362 -13.07675 -12.87320 -12.74017 -12.66520 -12.45286 -12.33356 -11.93469 -11.93033 -11.88304 -11.76408 -11.70931 -11.62566 -10.74909 -10.26263 -9.90840 -9.83591 -9.56417 -8.25596 -6.29084 -0.54889 -0.08664 0.23888 1.36470 1.40064 1.41793 1.48276 2.03433 2.06755 2.36139 2.42380 2.77382 3.09148 3.36317 3.63887 3.68519 3.92376 3.99082 4.01849 4.06600 4.15330 4.18548 4.29557 4.35849 4.42477 4.55849 4.63266 4.72432 4.76839 4.80365 4.89254 4.89811 4.94777 4.98760 5.07110 5.11320 5.16120 5.21546 5.22533 5.32713 5.48879 5.61651 5.67308 5.79069 5.98571 6.25273 6.33555 6.76812 7.34535 8.89593 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.005083 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.412633 B = 5507.717683 C = 7032.766055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.133 3.867 4 N -0.974 5.974 5 C 0.223 3.777 6 C -0.529 4.529 7 H 0.052 0.948 8 C 0.023 3.977 9 N -0.938 5.938 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.240 1.240 14 S 2.704 3.296 15 O -0.973 6.973 16 O -0.994 6.994 17 C -0.718 4.718 18 C 0.009 3.991 19 C -0.239 4.239 20 C 0.178 3.822 21 O -0.321 6.321 22 C 0.037 3.963 23 C -0.146 4.146 24 C -0.188 4.188 25 C 0.053 3.947 26 C -0.179 4.179 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.155 0.845 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.534 -1.181 -8.476 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C 0.009 3.991 4 N -0.811 5.811 5 C 0.099 3.901 6 C -0.568 4.568 7 H 0.071 0.929 8 C -0.175 4.175 9 N -0.578 5.578 10 Si 0.742 3.258 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.164 1.164 14 S 2.798 3.202 15 O -0.963 6.963 16 O -0.985 6.985 17 C -0.806 4.806 18 C -0.011 4.011 19 C -0.258 4.258 20 C 0.131 3.869 21 O -0.234 6.234 22 C -0.037 4.037 23 C -0.203 4.203 24 C -0.207 4.207 25 C 0.052 3.948 26 C -0.234 4.234 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.173 0.827 43 H 0.113 0.887 44 H 0.130 0.870 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.853 -1.703 -8.549 11.733 hybrid contribution -0.075 0.743 1.386 1.574 sum 7.778 -0.961 -7.163 10.617 Atomic orbital electron populations 1.24051 0.95230 1.03011 0.98186 1.23365 0.97022 0.98434 1.01921 1.20882 0.93214 0.96675 0.88355 1.57027 1.23302 1.85459 1.15319 1.19345 0.96808 0.94703 0.79261 1.21606 1.43581 0.91436 1.00222 0.92942 1.25585 0.95312 0.95932 1.00719 1.70027 1.48968 1.11966 1.26820 0.86142 0.78932 0.80570 0.80128 1.19788 1.20701 1.16370 1.01240 0.72545 0.74006 0.72417 1.93455 1.86519 1.75311 1.41060 1.93464 1.81090 1.74841 1.49086 1.30527 1.17567 1.25910 1.06637 1.20839 0.90142 0.95676 0.94432 1.21484 1.06863 0.96196 1.01276 1.19314 0.90080 0.84381 0.93104 1.86071 1.53401 1.33272 1.50647 1.23222 0.90537 1.00132 0.89814 1.21805 1.01107 0.93243 1.04126 1.20609 0.99786 0.98291 1.02036 1.19497 0.92128 0.91155 0.92062 1.21973 0.97661 1.05571 0.98242 0.86548 0.87862 0.87388 0.89514 0.87338 0.93035 0.94790 0.92608 0.84012 0.82532 0.90176 0.91840 0.91085 0.92085 0.87854 0.82735 0.88651 0.87018 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 14.32 67.78 0.97 -3.10 16 2 C -0.19 -5.39 9.78 25.65 0.25 -5.14 16 3 C 0.13 4.29 4.38 85.63 0.38 4.66 16 4 N -0.97 -38.28 2.71 -523.91 -1.42 -39.70 16 5 C 0.22 10.17 4.48 85.63 0.38 10.55 16 6 C -0.53 -28.12 9.94 25.60 0.25 -27.86 16 7 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 8 C 0.02 1.29 5.47 84.66 0.46 1.76 16 9 N -0.94 -55.80 13.96 21.45 0.30 -55.50 16 10 Si 0.92 42.12 27.47 68.60 1.88 44.00 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 14 S 2.70 107.18 5.07 -56.49 -0.29 106.90 16 15 O -0.97 -37.07 14.33 -128.00 -1.83 -38.91 16 16 O -0.99 -44.24 15.72 -128.00 -2.01 -46.25 16 17 C -0.72 -27.87 5.91 22.28 0.13 -27.74 16 18 C 0.01 0.32 9.54 22.25 0.21 0.54 16 19 C -0.24 -7.95 9.04 22.36 0.20 -7.75 16 20 C 0.18 5.92 6.69 22.50 0.15 6.07 16 21 O -0.32 -9.30 10.14 -92.51 -0.94 -10.24 16 22 C 0.04 0.79 5.46 71.99 0.39 1.18 16 23 C -0.15 -2.27 10.28 71.99 0.74 -1.53 16 24 C -0.19 -6.25 9.62 22.37 0.22 -6.04 16 25 C 0.05 1.87 5.87 -19.88 -0.12 1.75 16 26 C -0.18 -5.13 7.90 71.24 0.56 -4.57 16 27 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 29 H 0.11 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.09 2.80 7.79 -2.39 -0.02 2.79 16 31 H 0.11 3.09 4.28 -2.39 -0.01 3.08 16 32 H 0.05 2.25 7.16 -2.38 -0.02 2.23 16 33 H 0.03 1.61 6.48 -2.39 -0.02 1.59 16 34 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 35 H 0.14 5.12 7.33 -2.91 -0.02 5.10 16 36 H 0.16 4.16 6.30 -2.91 -0.02 4.14 16 37 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 38 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.16 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.10 2.75 6.57 -2.39 -0.02 2.73 16 44 H 0.11 2.44 8.04 -2.39 -0.02 2.42 16 45 H 0.10 3.05 4.00 -2.39 -0.01 3.04 16 Total: -1.00 -69.76 374.90 1.82 -67.94 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.94 Total: 28.98 kcal Atomic # 6 Polarization: -62.40 SS G_CDS: 5.19 Total: -57.22 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -1.12 Total: -95.20 kcal Atomic # 8 Polarization: -90.61 SS G_CDS: -4.78 Total: -95.40 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.00 kcal Atomic # 16 Polarization: 107.18 SS G_CDS: -0.29 Total: 106.90 kcal Total: -69.76 1.82 -67.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490103258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.599 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds