Wall clock time and date at job start Tue Mar 31 2020 22:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81392 * 109.47039 * 2 1 4 4 O 1.42093 * 110.54588 * 68.37812 * 3 2 1 5 5 O 1.42102 * 110.54373 * 291.62224 * 3 2 1 6 6 C 1.76207 * 104.44796 * 180.02562 * 3 2 1 7 7 C 1.38366 * 119.84979 * 269.72747 * 6 3 2 8 8 C 1.37960 * 120.14198 * 179.72524 * 7 6 3 9 9 C 1.39576 * 119.84941 * 0.54471 * 8 7 6 10 10 C 1.47852 * 120.13940 * 179.71015 * 9 8 7 11 11 O 1.21545 * 120.00284 * 137.51914 * 10 9 8 12 12 N 1.34775 * 119.99769 * 317.50926 * 10 9 8 13 13 C 1.46495 * 120.00329 * 212.32077 * 12 10 9 14 14 C 1.50703 * 109.47081 * 90.00010 * 13 12 10 15 15 H 1.07994 * 120.00148 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99869 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00341 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47105 * 90.00192 * 18 16 14 20 20 H 1.48500 * 109.47006 * 209.99726 * 18 16 14 21 21 H 1.48492 * 109.47004 * 329.99907 * 18 16 14 22 22 C 1.46501 * 119.99963 * 32.32826 * 12 10 9 23 23 C 1.53003 * 109.46829 * 301.60177 * 22 12 10 24 24 C 1.52998 * 109.47418 * 61.60328 * 22 12 10 25 25 C 1.39571 * 119.71323 * 359.72868 * 9 8 7 26 26 C 1.37954 * 119.85660 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47029 * 300.00016 * 1 2 3 29 29 H 1.09003 * 109.47206 * 59.99910 * 1 2 3 30 30 H 1.08999 * 109.47029 * 239.99984 * 2 1 3 31 31 H 1.09002 * 109.46690 * 119.99992 * 2 1 3 32 32 H 1.08001 * 119.92573 * 0.02562 * 7 6 3 33 33 H 1.07997 * 120.06882 * 180.25569 * 8 7 6 34 34 H 1.09001 * 109.47758 * 210.00334 * 13 12 10 35 35 H 1.09003 * 109.46740 * 330.00334 * 13 12 10 36 36 H 0.96998 * 120.00325 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.47267 * 181.61063 * 22 12 10 38 38 H 1.08994 * 109.47313 * 13.48822 * 23 22 12 39 39 H 1.09003 * 109.46990 * 133.48806 * 23 22 12 40 40 H 1.09000 * 109.47504 * 253.48673 * 23 22 12 41 41 H 1.08999 * 109.46744 * 103.65144 * 24 22 12 42 42 H 1.09002 * 109.47213 * 223.64553 * 24 22 12 43 43 H 1.08996 * 109.47087 * 343.64948 * 24 22 12 44 44 H 1.08005 * 120.07335 * 179.97438 * 25 9 8 45 45 H 1.07996 * 119.93108 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2369 5 8 1.8386 2.3438 -1.2370 6 6 3.8900 1.5559 -0.0008 7 6 4.5770 1.5011 1.1990 8 6 5.9508 1.3747 1.2055 9 6 6.6485 1.3135 -0.0018 10 6 8.1214 1.1844 -0.0024 11 8 8.6645 0.4232 -0.7788 12 7 8.8618 1.9111 0.8580 13 6 10.2009 2.3625 0.4719 14 6 10.1041 3.7123 -0.1913 15 1 9.1415 4.1866 -0.3126 16 6 11.2446 4.3417 -0.6432 17 7 12.4170 3.7644 -0.4950 18 14 11.1248 6.0151 -1.4646 19 1 11.2432 7.0806 -0.4370 20 1 12.2210 6.1596 -2.4559 21 1 9.8150 6.1355 -2.1539 22 6 8.3275 2.2493 2.1795 23 6 7.0220 3.0306 2.0171 24 6 8.0585 0.9643 2.9651 25 6 5.9498 1.3750 -1.2085 26 6 4.5756 1.4964 -1.2010 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0362 1.5526 2.1324 33 1 6.4855 1.3279 2.1426 34 1 10.8290 2.4380 1.3596 35 1 10.6391 1.6466 -0.2235 36 1 13.2193 4.2070 -0.8132 37 1 9.0516 2.8601 2.7188 38 1 6.6738 2.9463 0.9877 39 1 6.2681 2.6224 2.6902 40 1 7.1940 4.0797 2.2576 41 1 8.8439 0.8210 3.7072 42 1 7.0940 1.0406 3.4672 43 1 8.0459 0.1160 2.2809 44 1 6.4839 1.3286 -2.1461 45 1 4.0338 1.5445 -2.1340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522585670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:12 Heat of formation + Delta-G solvation = 1.871238 kcal Electronic energy + Delta-G solvation = -28158.097340 eV Core-core repulsion = 24271.728817 eV Total energy + Delta-G solvation = -3886.368523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14301 -38.12066 -37.29233 -36.60810 -36.12335 -33.57613 -33.55161 -31.98989 -31.39861 -30.46162 -27.38459 -26.96452 -24.87295 -24.07120 -23.26756 -22.36317 -21.78411 -19.29178 -18.67650 -18.10912 -16.74084 -16.56452 -16.44549 -16.29220 -15.83349 -15.50548 -15.00573 -14.83988 -14.51361 -14.23335 -14.13509 -13.87323 -13.75337 -13.45648 -13.12551 -12.90659 -12.69335 -12.43111 -12.34322 -12.26632 -12.13421 -12.04843 -11.98074 -11.88103 -11.31121 -11.22213 -11.11474 -11.04913 -10.93792 -10.78799 -10.63459 -10.32536 -10.20317 -9.73941 -9.35299 -9.17829 -8.53132 -8.45022 -7.73812 -6.13756 -4.20763 -0.19707 0.54558 1.30926 2.65355 2.86930 3.24655 3.31679 3.34653 3.43701 3.67442 3.81200 3.86150 4.21644 4.35815 4.38502 4.68105 4.72786 4.76626 4.82682 4.89932 5.10391 5.13157 5.19940 5.21091 5.26602 5.33805 5.43511 5.48347 5.59085 5.65629 5.70210 5.77275 5.85810 5.95716 6.04883 6.11289 6.23796 6.29680 6.46105 6.71753 6.97325 7.30589 7.46168 7.83012 8.11051 8.22744 8.61870 8.87386 9.45664 10.93526 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.003170 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.858562 B = 8831.527240 C = 9392.139936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.610 4.610 3 S 2.497 3.503 4 O -0.937 6.937 5 O -0.937 6.937 6 C -0.642 4.642 7 C -0.071 4.071 8 C -0.112 4.112 9 C -0.085 4.085 10 C 0.564 3.436 11 O -0.524 6.524 12 N -0.604 5.604 13 C 0.248 3.752 14 C -0.537 4.537 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.134 3.866 23 C -0.203 4.203 24 C -0.181 4.181 25 C -0.085 4.085 26 C -0.046 4.046 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.184 0.816 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.139 0.861 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.984 -8.466 6.077 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.677 3.323 4 O -0.934 6.934 5 O -0.934 6.934 6 C -0.729 4.729 7 C -0.090 4.090 8 C -0.129 4.129 9 C -0.089 4.089 10 C 0.351 3.649 11 O -0.400 6.400 12 N -0.337 5.337 13 C 0.129 3.871 14 C -0.576 4.576 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.029 3.971 23 C -0.259 4.259 24 C -0.238 4.238 25 C -0.104 4.104 26 C -0.065 4.065 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.200 0.800 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.157 0.843 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.895 -8.079 5.620 23.096 hybrid contribution 0.786 0.483 -0.514 1.056 sum -20.109 -7.596 5.106 22.094 Atomic orbital electron populations 1.21563 0.90369 1.05195 1.03692 1.30210 1.06961 1.24466 1.12275 1.05428 0.74508 0.77598 0.74763 1.93565 1.83479 1.71901 1.44472 1.93575 1.83478 1.71898 1.44468 1.30462 1.25202 1.17628 0.99618 1.20725 0.94340 0.97316 0.96578 1.23173 0.94906 0.94202 1.00654 1.20756 0.95295 0.98459 0.94408 1.18029 0.85724 0.80078 0.81033 1.90729 1.73434 1.34247 1.41599 1.48077 1.19190 1.53006 1.13398 1.19388 0.76110 0.94939 0.96616 1.21506 0.93611 1.03200 1.39275 0.92266 1.24940 0.95115 0.98134 0.95719 1.69933 0.98043 1.38499 1.46495 0.86497 0.77922 0.83729 0.79334 1.20494 1.21001 1.19813 1.21077 0.96373 0.95098 0.84539 1.23767 0.97108 1.01195 1.03843 1.22730 1.01597 0.98379 1.01115 1.21324 0.93750 0.97365 0.97996 1.20784 0.94451 0.94689 0.96554 0.89785 0.90782 0.90772 0.84539 0.84554 0.83984 0.80009 0.94720 0.93614 0.92555 0.88137 0.89003 0.90952 0.91946 0.91193 0.91128 0.91666 0.84279 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.61 -3.45 6.70 37.16 0.25 -3.20 16 3 S 2.50 24.55 5.16 -107.50 -0.55 24.00 16 4 O -0.94 -11.57 17.11 -57.54 -0.98 -12.56 16 5 O -0.94 -12.04 17.11 -57.54 -0.98 -13.02 16 6 C -0.64 -7.50 5.66 -39.49 -0.22 -7.72 16 7 C -0.07 -0.82 9.19 -39.64 -0.36 -1.19 16 8 C -0.11 -1.49 4.88 -39.18 -0.19 -1.68 16 9 C -0.09 -1.43 4.26 -104.97 -0.45 -1.88 16 10 C 0.56 11.70 5.87 -12.33 -0.07 11.63 16 11 O -0.52 -12.67 16.79 5.33 0.09 -12.58 16 12 N -0.60 -12.47 2.38 -168.57 -0.40 -12.87 16 13 C 0.25 6.29 5.32 -5.19 -0.03 6.26 16 14 C -0.54 -14.72 9.39 -34.44 -0.32 -15.04 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 18 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.13 2.11 3.27 -67.93 -0.22 1.88 16 23 C -0.20 -2.87 7.71 37.16 0.29 -2.59 16 24 C -0.18 -2.19 8.36 37.16 0.31 -1.88 16 25 C -0.08 -1.31 9.67 -39.19 -0.38 -1.69 16 26 C -0.05 -0.59 9.45 -39.64 -0.37 -0.96 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.14 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.14 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.14 1.27 7.55 -52.49 -0.40 0.87 16 33 H 0.18 2.14 1.07 -53.67 -0.06 2.08 16 34 H 0.03 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.05 1.31 7.36 -51.93 -0.38 0.93 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.10 1.60 7.81 -51.93 -0.41 1.20 16 38 H 0.09 1.50 3.99 -61.54 -0.25 1.25 16 39 H 0.07 0.78 5.23 -51.93 -0.27 0.51 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.63 6.18 -51.93 -0.32 0.31 16 43 H 0.06 0.88 6.82 -51.93 -0.35 0.53 16 44 H 0.14 2.16 8.06 -52.48 -0.42 1.73 16 45 H 0.14 1.50 7.55 -52.49 -0.40 1.11 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -36.33 370.47 -9.21 -45.54 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.17 Total: 1.39 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.51 Total: -16.77 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.34 Total: -37.99 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.88 Total: -38.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 24.55 SS G_CDS: -0.55 Total: 24.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.33 -9.21 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.413 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds