Wall clock time and date at job start Tue Mar 31 2020 22:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81392 * 109.47039 * 2 1 4 4 O 1.42093 * 110.54588 * 68.37812 * 3 2 1 5 5 O 1.42102 * 110.54373 * 291.62224 * 3 2 1 6 6 C 1.76207 * 104.44796 * 180.02562 * 3 2 1 7 7 C 1.38366 * 119.84979 * 269.72747 * 6 3 2 8 8 C 1.37960 * 120.14198 * 179.72524 * 7 6 3 9 9 C 1.39576 * 119.84941 * 0.54471 * 8 7 6 10 10 C 1.47852 * 120.13940 * 179.71015 * 9 8 7 11 11 O 1.21545 * 120.00284 * 137.51914 * 10 9 8 12 12 N 1.34775 * 119.99769 * 317.50926 * 10 9 8 13 13 C 1.46495 * 120.00329 * 212.32077 * 12 10 9 14 14 C 1.50703 * 109.47081 * 90.00010 * 13 12 10 15 15 H 1.07994 * 120.00148 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99869 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00341 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47105 * 90.00192 * 18 16 14 20 20 H 1.48500 * 109.47006 * 209.99726 * 18 16 14 21 21 H 1.48492 * 109.47004 * 329.99907 * 18 16 14 22 22 C 1.46501 * 119.99963 * 32.32826 * 12 10 9 23 23 C 1.53003 * 109.46829 * 301.60177 * 22 12 10 24 24 C 1.52998 * 109.47418 * 61.60328 * 22 12 10 25 25 C 1.39571 * 119.71323 * 359.72868 * 9 8 7 26 26 C 1.37954 * 119.85660 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47029 * 300.00016 * 1 2 3 29 29 H 1.09003 * 109.47206 * 59.99910 * 1 2 3 30 30 H 1.08999 * 109.47029 * 239.99984 * 2 1 3 31 31 H 1.09002 * 109.46690 * 119.99992 * 2 1 3 32 32 H 1.08001 * 119.92573 * 0.02562 * 7 6 3 33 33 H 1.07997 * 120.06882 * 180.25569 * 8 7 6 34 34 H 1.09001 * 109.47758 * 210.00334 * 13 12 10 35 35 H 1.09003 * 109.46740 * 330.00334 * 13 12 10 36 36 H 0.96998 * 120.00325 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.47267 * 181.61063 * 22 12 10 38 38 H 1.08994 * 109.47313 * 13.48822 * 23 22 12 39 39 H 1.09003 * 109.46990 * 133.48806 * 23 22 12 40 40 H 1.09000 * 109.47504 * 253.48673 * 23 22 12 41 41 H 1.08999 * 109.46744 * 103.65144 * 24 22 12 42 42 H 1.09002 * 109.47213 * 223.64553 * 24 22 12 43 43 H 1.08996 * 109.47087 * 343.64948 * 24 22 12 44 44 H 1.08005 * 120.07335 * 179.97438 * 25 9 8 45 45 H 1.07996 * 119.93108 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2369 5 8 1.8386 2.3438 -1.2370 6 6 3.8900 1.5559 -0.0008 7 6 4.5770 1.5011 1.1990 8 6 5.9508 1.3747 1.2055 9 6 6.6485 1.3135 -0.0018 10 6 8.1214 1.1844 -0.0024 11 8 8.6645 0.4232 -0.7788 12 7 8.8618 1.9111 0.8580 13 6 10.2009 2.3625 0.4719 14 6 10.1041 3.7123 -0.1913 15 1 9.1415 4.1866 -0.3126 16 6 11.2446 4.3417 -0.6432 17 7 12.4170 3.7644 -0.4950 18 14 11.1248 6.0151 -1.4646 19 1 11.2432 7.0806 -0.4370 20 1 12.2210 6.1596 -2.4559 21 1 9.8150 6.1355 -2.1539 22 6 8.3275 2.2493 2.1795 23 6 7.0220 3.0306 2.0171 24 6 8.0585 0.9643 2.9651 25 6 5.9498 1.3750 -1.2085 26 6 4.5756 1.4964 -1.2010 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0362 1.5526 2.1324 33 1 6.4855 1.3279 2.1426 34 1 10.8290 2.4380 1.3596 35 1 10.6391 1.6466 -0.2235 36 1 13.2193 4.2070 -0.8132 37 1 9.0516 2.8601 2.7188 38 1 6.6738 2.9463 0.9877 39 1 6.2681 2.6224 2.6902 40 1 7.1940 4.0797 2.2576 41 1 8.8439 0.8210 3.7072 42 1 7.0940 1.0406 3.4672 43 1 8.0459 0.1160 2.2809 44 1 6.4839 1.3286 -2.1461 45 1 4.0338 1.5445 -2.1340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522585670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:12 Heat of formation + Delta-G solvation = -23.941351 kcal Electronic energy + Delta-G solvation = -28159.216658 eV Core-core repulsion = 24271.728817 eV Total energy + Delta-G solvation = -3887.487841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.43487 -39.48541 -38.16597 -38.02339 -36.97605 -35.46420 -33.97730 -33.68873 -32.53757 -31.64314 -29.28855 -28.05900 -26.14897 -24.89309 -24.39498 -23.98237 -23.01373 -20.31980 -19.84716 -19.04611 -18.71684 -17.81749 -17.69384 -17.22235 -16.98619 -16.58315 -16.44880 -16.37460 -15.66333 -15.43516 -15.12406 -15.01577 -14.89982 -14.32140 -14.25717 -14.05108 -13.77230 -13.68724 -13.61935 -13.34251 -13.24858 -13.14172 -13.06989 -13.01032 -12.80527 -12.55581 -12.32455 -12.29548 -12.22581 -12.12890 -12.05921 -11.74276 -11.52660 -11.27803 -10.95136 -10.70200 -10.31224 -9.54571 -9.43653 -8.28301 -6.45077 -0.93440 -0.53641 0.26714 1.32984 1.34963 1.40354 1.47484 1.87109 2.10153 2.34405 2.43488 2.97669 3.00746 3.15701 3.40611 3.66528 3.74953 3.78274 3.83201 3.97751 4.04416 4.12632 4.25207 4.37254 4.46686 4.49024 4.57055 4.58994 4.79453 4.79578 4.85162 4.90551 4.92482 4.93506 4.98381 4.99333 5.12578 5.13746 5.19945 5.20986 5.37451 5.52147 5.68273 5.81146 5.98191 6.58420 6.65459 7.03514 7.27902 8.78124 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.003170 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.858562 B = 8831.527240 C = 9392.139936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.581 4.581 3 S 2.501 3.499 4 O -0.962 6.962 5 O -0.973 6.973 6 C -0.635 4.635 7 C -0.064 4.064 8 C -0.102 4.102 9 C -0.114 4.114 10 C 0.559 3.441 11 O -0.578 6.578 12 N -0.611 5.611 13 C 0.264 3.736 14 C -0.550 4.550 15 H 0.055 0.945 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.273 1.273 22 C 0.123 3.877 23 C -0.202 4.202 24 C -0.175 4.175 25 C -0.103 4.103 26 C -0.048 4.048 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.026 0.974 35 H -0.001 1.001 36 H 0.269 0.731 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.048 0.952 44 H 0.122 0.878 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.603 -8.546 7.941 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.714 4.714 3 S 2.683 3.317 4 O -0.960 6.960 5 O -0.971 6.971 6 C -0.720 4.720 7 C -0.082 4.082 8 C -0.119 4.119 9 C -0.117 4.117 10 C 0.349 3.651 11 O -0.458 6.458 12 N -0.342 5.342 13 C 0.143 3.857 14 C -0.588 4.588 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.790 3.210 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.198 1.198 22 C 0.020 3.980 23 C -0.258 4.258 24 C -0.232 4.232 25 C -0.123 4.123 26 C -0.067 4.067 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.198 0.802 33 H 0.215 0.785 34 H 0.044 0.956 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.067 0.933 44 H 0.140 0.860 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.500 -8.105 7.524 26.881 hybrid contribution 1.792 0.416 -1.073 2.129 sum -22.709 -7.689 6.451 24.828 Atomic orbital electron populations 1.21780 0.89678 1.06784 1.04055 1.30019 1.07277 1.19163 1.14958 1.05440 0.73179 0.79638 0.73406 1.93529 1.83115 1.74289 1.45036 1.93532 1.83300 1.74559 1.45678 1.30928 1.26783 1.15147 0.99143 1.21191 0.93500 0.95447 0.98107 1.23307 0.95661 0.93276 0.99697 1.20414 0.92416 1.02387 0.96481 1.18725 0.87765 0.78822 0.79790 1.90675 1.74997 1.36639 1.43507 1.48056 1.17730 1.52872 1.15578 1.18838 0.78658 0.93218 0.94980 1.21736 0.93551 1.03903 1.39657 0.92689 1.25832 0.94680 1.02048 0.96168 1.70049 0.98784 1.40208 1.47342 0.85436 0.77793 0.79198 0.78550 1.18840 1.20453 1.19791 1.21448 0.96969 0.97385 0.82231 1.23784 0.97097 1.01154 1.03755 1.22694 1.04545 0.95396 1.00601 1.21333 0.95127 0.98707 0.97153 1.20939 0.93129 0.94432 0.98197 0.87418 0.90350 0.90851 0.82391 0.81607 0.80206 0.78466 0.95649 0.98261 0.92222 0.88913 0.90938 0.86503 0.92167 0.90071 0.86601 0.93281 0.86036 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.92 71.98 0.71 -0.28 16 2 C -0.58 -3.77 6.70 71.98 0.48 -3.29 16 3 S 2.50 41.56 5.16 -56.49 -0.29 41.27 16 4 O -0.96 -20.66 17.11 -127.65 -2.18 -22.84 16 5 O -0.97 -23.30 17.11 -127.65 -2.18 -25.48 16 6 C -0.64 -13.14 5.66 22.33 0.13 -13.01 16 7 C -0.06 -1.25 9.19 22.23 0.20 -1.05 16 8 C -0.10 -2.50 4.88 22.53 0.11 -2.39 16 9 C -0.11 -3.87 4.26 -20.09 -0.09 -3.96 16 10 C 0.56 24.65 5.87 86.79 0.51 25.16 16 11 O -0.58 -30.41 16.79 -3.86 -0.06 -30.48 16 12 N -0.61 -26.54 2.38 -805.53 -1.92 -28.46 16 13 C 0.26 14.32 5.32 85.63 0.46 14.78 16 14 C -0.55 -31.49 9.39 25.60 0.24 -31.25 16 15 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 16 C 0.01 0.71 5.46 84.65 0.46 1.17 16 17 N -0.92 -55.54 13.29 21.45 0.28 -55.26 16 18 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.12 3.82 3.27 44.99 0.15 3.97 16 23 C -0.20 -5.36 7.71 71.98 0.56 -4.81 16 24 C -0.18 -3.91 8.36 71.98 0.60 -3.30 16 25 C -0.10 -3.32 9.67 22.52 0.22 -3.10 16 26 C -0.05 -1.19 9.45 22.23 0.21 -0.98 16 27 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.17 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.18 2.18 7.55 -2.91 -0.02 2.16 16 33 H 0.20 4.01 1.07 -4.02 0.00 4.01 16 34 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 35 H 0.00 -0.05 7.36 -2.39 -0.02 -0.06 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.09 2.99 7.81 -2.39 -0.02 2.97 16 38 H 0.07 2.31 3.99 -11.42 -0.05 2.26 16 39 H 0.12 2.01 5.23 -2.39 -0.01 2.00 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.12 1.52 6.18 -2.39 -0.01 1.50 16 43 H 0.05 1.29 6.82 -2.39 -0.02 1.27 16 44 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.16 3.25 7.55 -2.91 -0.02 3.23 16 Total: -1.00 -85.65 370.47 1.60 -84.05 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.98 Total: 12.77 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.95 Total: -22.34 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.63 Total: -83.71 kcal Atomic # 8 Polarization: -74.37 SS G_CDS: -4.43 Total: -78.80 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 41.56 SS G_CDS: -0.29 Total: 41.27 kcal Total: -85.65 1.60 -84.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.110 kcal (2) G-P(sol) polarization free energy of solvation -85.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds