Wall clock time and date at job start Tue Mar 31 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38145 * 119.94387 * 179.74053 * 5 4 3 7 7 C 1.38270 * 120.05493 * 0.50964 * 6 5 4 8 8 S 1.76193 * 119.94348 * 179.74007 * 7 6 5 9 9 O 1.42099 * 106.40280 * 23.56834 * 8 7 6 10 10 O 1.42104 * 106.40101 * 156.48331 * 8 7 6 11 11 N 1.65601 * 107.22274 * 270.02582 * 8 7 6 12 12 C 1.46922 * 120.63059 * 269.72240 * 11 8 7 13 13 C 1.53626 * 108.54629 * 126.36428 * 12 11 8 14 14 C 1.53044 * 109.23651 * 54.85584 * 13 12 11 15 15 C 1.50698 * 109.44756 * 178.49956 * 14 13 12 16 16 H 1.08002 * 120.00369 * 120.06375 * 15 14 13 17 17 C 1.37883 * 120.00097 * 300.06530 * 15 14 13 18 18 N 1.31517 * 119.99825 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00290 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46835 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46809 * 119.99432 * 19 17 15 22 22 H 1.48491 * 109.47272 * 239.99628 * 19 17 15 23 23 C 1.53038 * 109.53884 * 298.51003 * 14 13 12 24 24 C 1.46923 * 120.62980 * 90.00128 * 11 8 7 25 25 C 1.38261 * 120.10772 * 359.76899 * 7 6 5 26 26 C 1.38138 * 120.06029 * 359.97438 * 25 7 6 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 31 31 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 32 32 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 33 33 H 1.08003 * 119.97031 * 180.27907 * 6 5 4 34 34 H 1.09002 * 109.58729 * 246.20176 * 12 11 8 35 35 H 1.09004 * 109.58665 * 6.62278 * 12 11 8 36 36 H 1.09000 * 109.63417 * 294.86962 * 13 12 11 37 37 H 1.08997 * 109.43385 * 174.72719 * 13 12 11 38 38 H 1.08998 * 109.46131 * 58.53226 * 14 13 12 39 39 H 0.96996 * 120.00365 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.50291 * 301.41813 * 23 14 13 41 41 H 1.09004 * 109.52566 * 181.32900 * 23 14 13 42 42 H 1.08997 * 109.58852 * 353.37110 * 24 11 8 43 43 H 1.08994 * 109.58857 * 113.65877 * 24 11 8 44 44 H 1.08006 * 119.96917 * 179.97438 * 25 7 6 45 45 H 1.07997 * 120.03023 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0019 7 6 6.0962 1.8880 0.0014 8 16 7.8429 2.1189 0.0021 9 8 8.4047 0.9325 -0.5420 10 8 8.0772 3.4104 -0.5424 11 7 8.3284 2.1833 1.5841 12 6 8.3880 3.4665 2.2972 13 6 7.5698 3.3445 3.5917 14 6 8.0822 2.1514 4.4016 15 6 7.3072 2.0495 5.6900 16 1 6.7395 1.1573 5.9096 17 6 7.3229 3.0952 6.5885 18 7 8.0146 4.1814 6.3214 19 14 6.3616 2.9692 8.1853 20 1 5.6721 1.6554 8.2455 21 1 7.2933 3.0930 9.3349 22 1 5.3550 4.0593 8.2443 23 6 7.8969 0.8658 3.5922 24 6 8.7135 0.9591 2.2993 25 6 5.2549 2.9852 0.0011 26 6 3.8851 2.8069 0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.7885 -0.5725 0.0116 33 1 6.2281 -0.2458 0.0022 34 1 9.4245 3.7031 2.5376 35 1 7.9675 4.2528 1.6702 36 1 6.5182 3.1938 3.3475 37 1 7.6805 4.2567 4.1780 38 1 9.1401 2.2910 4.6242 39 1 8.0260 4.9169 6.9536 40 1 6.8424 0.7384 3.3480 41 1 8.2402 0.0135 4.1785 42 1 8.5078 0.0904 1.6739 43 1 9.7765 0.9942 2.5378 44 1 5.6692 3.9827 0.0011 45 1 3.2284 3.6643 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542845452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:22 Heat of formation + Delta-G solvation = -113.383867 kcal Electronic energy + Delta-G solvation = -28160.803025 eV Core-core repulsion = 24269.436666 eV Total energy + Delta-G solvation = -3891.366359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27274 -39.26763 -38.65111 -38.38738 -36.95450 -35.25835 -33.06826 -32.60141 -32.11232 -31.63055 -30.80732 -27.60004 -25.22358 -24.27546 -23.93351 -23.90946 -22.80176 -21.08169 -19.86512 -19.54262 -18.93467 -18.42433 -18.01824 -17.37770 -17.17127 -16.60019 -16.47939 -15.81478 -15.41293 -15.10295 -14.89760 -14.85794 -14.67276 -14.50767 -14.44086 -14.34587 -14.16307 -13.69618 -13.46354 -13.35963 -13.24048 -13.21327 -12.92540 -12.79968 -12.76032 -12.56001 -12.39828 -12.07702 -11.96097 -11.91442 -11.84119 -11.80584 -11.37936 -10.93629 -10.76162 -10.36206 -10.19913 -9.84865 -9.63416 -8.03789 -6.16619 -0.63398 -0.15735 0.19992 1.40592 1.44103 1.53237 1.91030 2.04552 2.43727 2.45869 2.78185 3.22189 3.23512 3.62084 3.74559 3.82097 4.01321 4.05703 4.14772 4.25505 4.32397 4.32796 4.40180 4.46863 4.55635 4.68089 4.72366 4.78073 4.82870 4.86603 4.90675 4.91882 4.96536 5.03053 5.07385 5.16336 5.22473 5.34966 5.38808 5.55122 5.59621 5.68184 5.75079 6.07703 6.22620 6.22904 6.45023 6.95221 7.51067 8.99608 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.004368 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.079531 B = 6408.366835 C = 8540.315770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.038 3.962 3 O -0.323 6.323 4 C 0.177 3.823 5 C -0.229 4.229 6 C 0.013 3.987 7 C -0.721 4.721 8 S 2.709 3.291 9 O -0.978 6.978 10 O -0.984 6.984 11 N -0.991 5.991 12 C 0.126 3.874 13 C -0.114 4.114 14 C 0.046 3.954 15 C -0.529 4.529 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.116 4.116 24 C 0.123 3.877 25 C 0.009 3.991 26 C -0.183 4.183 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.001 0.999 39 H 0.259 0.741 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.150 0.850 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 -8.297 -14.030 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 O -0.236 6.236 4 C 0.130 3.870 5 C -0.248 4.248 6 C -0.006 4.006 7 C -0.810 4.810 8 S 2.802 3.198 9 O -0.969 6.969 10 O -0.975 6.975 11 N -0.829 5.829 12 C 0.001 3.999 13 C -0.153 4.153 14 C 0.027 3.973 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.155 4.155 24 C -0.002 4.002 25 C -0.011 4.011 26 C -0.202 4.202 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.168 0.832 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.257 -7.933 -14.683 19.589 hybrid contribution -0.999 0.104 1.554 1.850 sum -11.256 -7.829 -13.130 18.984 Atomic orbital electron populations 1.21821 0.91183 1.04392 1.03271 1.23242 0.97222 0.80221 1.02938 1.86110 1.18198 1.32187 1.87103 1.19416 0.82993 0.94531 0.90076 1.21615 0.93734 0.99592 1.09909 1.20952 0.95902 0.95376 0.88395 1.30737 1.26101 1.00751 1.23412 1.01190 0.74001 0.72517 0.72076 1.93508 1.77292 1.49159 1.76942 1.93513 1.85489 1.41418 1.77060 1.57555 1.80698 1.14183 1.30505 1.21617 1.01200 0.82986 0.94047 1.21859 0.96854 1.02452 0.94164 1.18572 0.94880 0.91531 0.92292 1.21625 1.29875 1.01302 1.03933 0.93220 1.25634 0.96389 0.95352 1.00891 1.69977 1.42312 1.06276 1.36758 0.85706 0.78667 0.77945 0.80496 1.19442 1.20878 1.20970 1.21871 0.99167 0.99059 0.95356 1.21586 0.99738 0.85068 0.93819 1.20887 0.92774 0.98334 0.89065 1.20755 0.95209 0.96105 1.08171 0.87920 0.92064 0.91530 0.90839 0.90105 0.81812 0.82661 0.91484 0.89451 0.94867 0.90898 0.98096 0.93136 0.93010 0.91593 0.88127 0.90695 0.83187 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.04 0.52 5.46 71.98 0.39 0.92 16 3 O -0.32 -6.93 10.14 -92.46 -0.94 -7.87 16 4 C 0.18 4.26 6.69 22.50 0.15 4.41 16 5 C -0.23 -5.04 9.04 22.36 0.20 -4.84 16 6 C 0.01 0.33 9.52 22.26 0.21 0.54 16 7 C -0.72 -20.59 5.97 22.28 0.13 -20.46 16 8 S 2.71 85.27 5.69 -56.49 -0.32 84.94 16 9 O -0.98 -32.55 15.99 -128.00 -2.05 -34.60 16 10 O -0.98 -34.83 15.98 -128.00 -2.05 -36.88 16 11 N -0.99 -32.86 3.28 -512.29 -1.68 -34.54 16 12 C 0.13 4.63 6.41 86.51 0.55 5.18 16 13 C -0.11 -5.05 5.17 30.82 0.16 -4.89 16 14 C 0.05 2.15 2.06 -11.51 -0.02 2.13 16 15 C -0.53 -27.96 8.56 25.60 0.22 -27.74 16 16 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 17 C 0.02 0.86 5.30 84.66 0.45 1.30 16 18 N -0.91 -50.85 11.31 21.45 0.24 -50.61 16 19 Si 0.95 42.66 29.54 68.60 2.03 44.68 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 C -0.12 -4.33 5.30 30.67 0.16 -4.17 16 24 C 0.12 3.89 6.37 86.37 0.55 4.44 16 25 C 0.01 0.24 9.51 22.25 0.21 0.45 16 26 C -0.18 -4.64 9.99 22.36 0.22 -4.42 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.93 7.65 -2.39 -0.02 0.91 16 31 H 0.08 0.87 7.68 -2.39 -0.02 0.85 16 32 H 0.16 2.49 6.30 -2.91 -0.02 2.48 16 33 H 0.16 3.31 7.61 -2.91 -0.02 3.28 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.09 2.92 7.12 -2.38 -0.02 2.91 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 3.69 6.03 -2.39 -0.01 3.67 16 38 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.10 2.68 7.13 -2.39 -0.02 2.66 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.15 3.83 7.61 -2.91 -0.02 3.81 16 45 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -66.55 373.39 0.55 -65.99 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.98 Total: 16.83 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 4.34 Total: -47.96 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.44 Total: -85.15 kcal Atomic # 8 Polarization: -74.31 SS G_CDS: -5.03 Total: -79.34 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 85.27 SS G_CDS: -0.32 Total: 84.94 kcal Total: -66.55 0.55 -65.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542845452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.392 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds