Wall clock time and date at job start Tue Mar 31 2020 23:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99724 * 2 1 4 4 C 1.50706 * 109.46595 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99684 * 90.00613 * 4 3 2 6 6 C 1.38214 * 119.99662 * 180.02562 * 5 4 3 7 7 C 1.38256 * 120.00160 * 359.97438 * 6 5 4 8 8 C 1.38211 * 120.00062 * 0.26318 * 7 6 5 9 9 S 1.76195 * 120.00141 * 179.72267 * 8 7 6 10 10 O 1.42101 * 106.40262 * 203.53854 * 9 8 7 11 11 O 1.42095 * 106.40258 * 336.45281 * 9 8 7 12 12 N 1.65595 * 107.22212 * 89.99412 * 9 8 7 13 13 C 1.46929 * 120.63111 * 269.72015 * 12 9 8 14 14 C 1.53622 * 108.54175 * 126.36718 * 13 12 9 15 15 C 1.53042 * 109.24335 * 54.85852 * 14 13 12 16 16 C 1.50703 * 109.45109 * 178.49605 * 15 14 13 17 17 H 1.08004 * 119.99552 * 120.05912 * 16 15 14 18 18 C 1.37868 * 119.99940 * 300.06440 * 16 15 14 19 19 N 1.31519 * 120.00471 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47167 * 89.99808 * 20 18 16 22 22 H 1.48507 * 109.46964 * 209.99641 * 20 18 16 23 23 H 1.48496 * 109.46769 * 329.99517 * 20 18 16 24 24 C 1.53044 * 109.53837 * 298.50897 * 15 14 13 25 25 C 1.46927 * 120.63000 * 89.99858 * 12 9 8 26 26 C 1.38212 * 120.00275 * 270.02086 * 4 3 2 27 27 H 1.08998 * 109.47012 * 299.99621 * 1 2 3 28 28 H 1.08996 * 109.46936 * 59.99797 * 1 2 3 29 29 H 1.08998 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47046 * 60.00569 * 3 2 1 31 31 H 1.08993 * 109.47629 * 299.99829 * 3 2 1 32 32 H 1.07997 * 119.99889 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.99762 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99676 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.58768 * 246.19818 * 13 12 9 36 36 H 1.09002 * 109.58618 * 6.62965 * 13 12 9 37 37 H 1.09006 * 109.63792 * 294.86449 * 14 13 12 38 38 H 1.08996 * 109.46157 * 174.74592 * 14 13 12 39 39 H 1.08996 * 109.45867 * 58.53088 * 15 14 13 40 40 H 0.96991 * 120.00182 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.49454 * 301.41511 * 24 15 14 42 42 H 1.09001 * 109.52419 * 181.33113 * 24 15 14 43 43 H 1.08995 * 109.58947 * 353.37833 * 25 12 9 44 44 H 1.09002 * 109.58775 * 113.66129 * 25 12 9 45 45 H 1.08004 * 119.99477 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2022 1.1317 -1.1965 6 6 5.5799 1.0220 -1.1959 7 6 6.2686 0.9675 0.0017 8 6 5.5789 1.0172 1.1984 9 16 6.4559 0.9404 2.7246 10 8 5.5329 0.4636 3.6942 11 8 7.6915 0.2966 2.4454 12 7 6.8260 2.4956 3.1563 13 6 8.0879 3.1121 2.7248 14 6 7.7676 4.4398 2.0215 15 6 6.9277 5.3151 2.9546 16 6 6.6419 6.6338 2.2834 17 1 5.6214 6.9365 2.1003 18 6 7.6830 7.4536 1.9029 19 7 8.9256 7.0851 2.1262 20 14 7.3287 9.0885 1.0716 21 1 7.1974 10.1497 2.1021 22 1 8.4437 9.4277 0.1511 23 1 6.0635 8.9878 0.3006 24 6 5.6081 4.6071 3.2703 25 6 5.9014 3.2832 3.9831 26 6 4.2010 1.1316 1.1978 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.6641 1.1739 -2.1319 33 1 6.1186 0.9788 -2.1310 34 1 7.3452 0.8813 0.0021 35 1 8.7193 3.2987 3.5936 36 1 8.6026 2.4454 2.0329 37 1 7.2094 4.2440 1.1059 38 1 8.6967 4.9550 1.7778 39 1 7.4764 5.4901 3.8799 40 1 9.6580 7.6621 1.8589 41 1 5.0703 4.4097 2.3430 42 1 5.0000 5.2410 3.9158 43 1 4.9729 2.7294 4.1218 44 1 6.3570 3.4813 4.9533 45 1 3.6622 1.1737 2.1329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543773975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:53 Heat of formation + Delta-G solvation = -116.975104 kcal Electronic energy + Delta-G solvation = -28236.865657 eV Core-core repulsion = 24345.343570 eV Total energy + Delta-G solvation = -3891.522087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51800 -39.28664 -38.53831 -38.42716 -37.01394 -35.26853 -33.22637 -32.61640 -32.29109 -31.65593 -28.26595 -27.60914 -26.30939 -24.47369 -24.04382 -23.93771 -22.82455 -21.06046 -19.78681 -18.99678 -18.63155 -18.09727 -17.37935 -17.34241 -17.06611 -16.71433 -16.49694 -16.21351 -15.79452 -15.33334 -15.06063 -14.94883 -14.85979 -14.47211 -14.36345 -14.04339 -13.77421 -13.68888 -13.48754 -13.35070 -13.23662 -13.17346 -12.93039 -12.81209 -12.57855 -12.43344 -12.39771 -12.14250 -12.05873 -11.86976 -11.78211 -11.39072 -10.95963 -10.77918 -10.68266 -10.44066 -10.31883 -10.00935 -9.82944 -8.03411 -6.16438 -0.69969 -0.20997 0.17631 1.42526 1.44872 1.53003 1.86218 2.35785 2.46330 2.69241 3.03984 3.21642 3.23551 3.72312 3.78587 3.79536 3.96130 4.15609 4.20450 4.28459 4.34096 4.40001 4.45927 4.53897 4.56305 4.56837 4.65599 4.74198 4.76379 4.84227 4.86032 4.87254 4.95085 5.01400 5.14314 5.21426 5.33059 5.33981 5.37276 5.57956 5.66107 5.74195 5.79235 6.06944 6.16349 6.21838 6.44707 6.94999 7.51285 8.99878 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.003977 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.362058 B = 7038.149697 C = 8239.998959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.101 3.899 4 C -0.124 4.124 5 C -0.045 4.045 6 C -0.142 4.142 7 C -0.029 4.029 8 C -0.684 4.684 9 S 2.703 3.297 10 O -0.980 6.980 11 O -0.982 6.982 12 N -0.990 5.990 13 C 0.126 3.874 14 C -0.113 4.113 15 C 0.046 3.954 16 C -0.529 4.529 17 H 0.050 0.950 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.115 4.115 25 C 0.122 3.878 26 C -0.015 4.015 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.000 1.000 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 -12.241 -6.238 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.025 3.975 4 C -0.125 4.125 5 C -0.063 4.063 6 C -0.160 4.160 7 C -0.049 4.049 8 C -0.773 4.773 9 S 2.797 3.203 10 O -0.970 6.970 11 O -0.972 6.972 12 N -0.828 5.828 13 C 0.001 3.999 14 C -0.153 4.153 15 C 0.028 3.972 16 C -0.568 4.568 17 H 0.069 0.931 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.773 3.227 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.195 1.195 24 C -0.154 4.154 25 C -0.003 4.003 26 C -0.035 4.035 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.019 0.981 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.082 -13.097 -5.767 18.729 hybrid contribution -0.232 1.695 -0.868 1.919 sum -12.314 -11.402 -6.635 18.046 Atomic orbital electron populations 1.22966 0.79115 1.03918 1.01211 1.87928 1.21703 1.27928 1.95678 1.21424 0.88006 0.85201 1.02829 1.19979 0.95744 1.03299 0.93446 1.21748 0.94534 0.91474 0.98536 1.21649 0.94801 1.00771 0.98827 1.21221 1.00854 0.91122 0.91659 1.30849 1.06596 1.19555 1.20272 1.01374 0.72848 0.72324 0.73795 1.93515 1.65282 1.78983 1.59225 1.93515 1.44014 1.73524 1.86173 1.57538 1.28400 1.32250 1.64634 1.21644 0.83467 0.95357 0.99425 1.21856 1.02118 0.93576 0.97700 1.18570 0.92040 0.92475 0.94162 1.21580 0.92438 1.03961 1.38774 0.93149 1.25638 0.95113 1.00907 0.96618 1.69970 0.98816 1.38047 1.48514 0.85747 0.77692 0.80794 0.78508 1.20526 1.21170 1.19531 1.21871 0.98765 0.95160 0.99607 1.21596 0.92602 0.92460 0.93617 1.20939 0.91806 0.91113 0.99602 0.93135 0.92503 0.88616 0.91304 0.89922 0.82191 0.81950 0.83797 0.91448 0.89431 0.94715 0.90784 0.98139 0.93120 0.92947 0.91544 0.88434 0.90613 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.62 10.69 -148.98 -1.59 -10.21 16 3 C 0.10 1.90 6.06 71.24 0.43 2.33 16 4 C -0.12 -2.91 5.51 -19.86 -0.11 -3.02 16 5 C -0.04 -0.92 9.70 22.27 0.22 -0.70 16 6 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16 7 C -0.03 -0.78 9.52 22.27 0.21 -0.57 16 8 C -0.68 -20.16 5.97 22.27 0.13 -20.03 16 9 S 2.70 88.01 5.69 -56.49 -0.32 87.69 16 10 O -0.98 -34.37 16.00 -128.00 -2.05 -36.42 16 11 O -0.98 -35.43 15.99 -128.00 -2.05 -37.48 16 12 N -0.99 -33.26 3.28 -512.27 -1.68 -34.94 16 13 C 0.13 4.60 6.41 86.51 0.55 5.16 16 14 C -0.11 -4.96 5.17 30.82 0.16 -4.80 16 15 C 0.05 2.15 2.06 -11.51 -0.02 2.13 16 16 C -0.53 -27.68 8.56 25.60 0.22 -27.46 16 17 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 18 C 0.02 0.84 5.30 84.65 0.45 1.29 16 19 N -0.91 -50.45 11.31 21.44 0.24 -50.21 16 20 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 25 C 0.12 3.93 6.37 86.36 0.55 4.48 16 26 C -0.02 -0.42 9.18 22.27 0.20 -0.21 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 32 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.14 3.60 7.62 -2.91 -0.02 3.58 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.09 2.92 7.12 -2.39 -0.02 2.91 16 37 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 3.70 6.03 -2.39 -0.01 3.69 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.10 2.71 7.13 -2.39 -0.02 2.69 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.14 3.61 7.62 -2.91 -0.02 3.59 16 Total: -1.00 -67.29 377.13 0.18 -67.11 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.97 Total: 17.12 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 4.63 Total: -46.83 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.44 Total: -85.15 kcal Atomic # 8 Polarization: -78.43 SS G_CDS: -5.69 Total: -84.11 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 88.01 SS G_CDS: -0.32 Total: 87.69 kcal Total: -67.29 0.18 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543773975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.868 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds