Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47377 * 2 1 4 4 C 1.46503 * 120.00090 * 277.52794 * 3 2 1 5 5 C 1.50702 * 109.46822 * 269.99643 * 4 3 2 6 6 H 1.07997 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99601 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00349 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47327 * 60.00085 * 9 7 5 11 11 H 1.48501 * 109.47428 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47495 * 300.00112 * 9 7 5 13 13 C 1.34776 * 120.00217 * 97.52125 * 3 2 1 14 14 O 1.21553 * 120.00437 * 185.75967 * 13 3 2 15 15 C 1.47853 * 119.99721 * 5.75451 * 13 3 2 16 16 C 1.39590 * 120.14580 * 314.32814 * 15 13 3 17 17 C 1.37927 * 119.85537 * 180.02562 * 16 15 13 18 18 C 1.38387 * 120.14254 * 359.74963 * 17 16 15 19 19 C 1.38330 * 120.29460 * 0.50743 * 18 17 16 20 20 S 1.76201 * 119.93248 * 179.76852 * 19 18 17 21 21 O 1.42095 * 104.27629 * 153.65309 * 20 19 18 22 22 O 1.42095 * 104.27485 * 25.79437 * 20 19 18 23 23 C 1.81404 * 104.44714 * 269.72515 * 20 19 18 24 24 C 1.52993 * 109.47051 * 304.99719 * 23 20 19 25 25 C 1.52999 * 109.46658 * 184.99821 * 23 20 19 26 26 C 1.37986 * 120.14067 * 359.49183 * 19 18 17 27 27 H 1.08991 * 109.47025 * 69.38403 * 1 2 3 28 28 H 1.09003 * 109.47110 * 189.38786 * 1 2 3 29 29 H 1.09003 * 109.46871 * 309.37825 * 1 2 3 30 30 H 1.09005 * 109.47402 * 240.00208 * 2 1 3 31 31 H 1.08997 * 109.47643 * 120.00190 * 2 1 3 32 32 H 1.08995 * 109.47261 * 29.98945 * 4 3 2 33 33 H 1.09003 * 109.47308 * 149.99635 * 4 3 2 34 34 H 0.97001 * 119.99857 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.07234 * 0.02562 * 16 15 13 36 36 H 1.08004 * 119.93434 * 180.02562 * 17 16 15 37 37 H 1.08000 * 119.85162 * 180.27832 * 18 17 16 38 38 H 1.08995 * 109.46847 * 65.00087 * 23 20 19 39 39 H 1.09001 * 109.47589 * 60.00290 * 24 23 20 40 40 H 1.09000 * 109.47155 * 179.97438 * 24 23 20 41 41 H 1.09005 * 109.47586 * 299.99895 * 24 23 20 42 42 H 1.09000 * 109.46464 * 179.97438 * 25 23 20 43 43 H 1.08998 * 109.47154 * 299.99672 * 25 23 20 44 44 H 1.08995 * 109.47676 * 60.00168 * 25 23 20 45 45 H 1.08004 * 120.06878 * 180.23268 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1059 2.1272 -1.2578 5 6 3.4639 1.9135 -1.8751 6 1 4.1894 1.2852 -1.3799 7 6 3.7803 2.5200 -3.0722 8 7 2.8966 3.2848 -3.6756 9 14 5.4638 2.2557 -3.8370 10 1 5.6646 0.8087 -4.1040 11 1 5.5526 3.0117 -5.1121 12 1 6.5131 2.7368 -2.9028 13 6 2.3871 1.9656 1.1571 14 8 2.6924 3.1421 1.1736 15 6 2.4201 1.1757 2.4065 16 6 1.3575 0.3301 2.7296 17 6 1.3943 -0.4036 3.8969 18 6 2.4839 -0.3067 4.7446 19 6 3.5378 0.5334 4.4330 20 16 4.9177 0.6540 5.5221 21 8 5.9961 1.0376 4.6802 22 8 4.9313 -0.5896 6.2094 23 6 4.4836 2.0026 6.6550 24 6 4.1501 3.2590 5.8481 25 6 5.6663 2.2907 7.5818 26 6 3.5135 1.2728 3.2683 27 1 -0.3633 0.3618 -0.9618 28 1 -0.3633 -1.0139 0.1676 29 1 -0.3633 0.6520 0.7944 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3356 1.7747 -1.9436 33 1 1.9591 3.1893 -1.0613 34 1 3.1193 3.7118 -4.5176 35 1 0.5084 0.2506 2.0669 36 1 0.5730 -1.0586 4.1480 37 1 2.5099 -0.8868 5.6552 38 1 3.6178 1.7126 7.2502 39 1 3.3075 3.0538 5.1878 40 1 3.8888 4.0692 6.5287 41 1 5.0159 3.5491 5.2528 42 1 5.4056 3.1014 8.2621 43 1 5.9039 1.3956 8.1566 44 1 6.5322 2.5807 6.9866 45 1 4.3387 1.9255 3.0243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546744818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = -73.582373 kcal Electronic energy + Delta-G solvation = -27928.901684 eV Core-core repulsion = 24039.261247 eV Total energy + Delta-G solvation = -3889.640437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17006 -38.09335 -37.28947 -36.09055 -35.56281 -35.34774 -32.98047 -31.57856 -31.25935 -30.21349 -27.69467 -27.28350 -24.17176 -23.58008 -23.12998 -22.65317 -22.13320 -19.71019 -18.60537 -17.62572 -17.03323 -16.63212 -16.42715 -16.18333 -15.91157 -15.57992 -15.14450 -14.62876 -14.45908 -14.07248 -14.03018 -13.74256 -13.61095 -13.50890 -13.17720 -12.90894 -12.67057 -12.43856 -12.22912 -12.17560 -12.12602 -12.08332 -11.85941 -11.79742 -11.74868 -11.57088 -11.22870 -11.02861 -10.86976 -10.84549 -10.59294 -10.46943 -10.16883 -9.70988 -9.43904 -9.24392 -8.97880 -8.45389 -7.77888 -6.07338 -4.12544 -0.15682 0.62752 1.01911 2.66041 2.99602 3.32404 3.36427 3.39139 3.49439 3.69339 3.83917 3.90940 4.17897 4.34429 4.43644 4.65504 4.67174 4.70832 4.81837 5.01166 5.12093 5.14752 5.24189 5.26896 5.27820 5.33305 5.42397 5.44247 5.52226 5.59295 5.61047 5.69564 5.82159 5.84189 5.91527 6.04239 6.15168 6.17804 6.40654 6.59398 6.99228 7.37329 7.44953 7.88671 8.18482 8.27243 8.79835 8.96309 9.52939 11.00712 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003456 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.964388 B = 8098.877303 C = 9181.972676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 N -0.586 5.586 4 C 0.246 3.754 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.546 3.454 14 O -0.532 6.532 15 C -0.131 4.131 16 C -0.052 4.052 17 C -0.147 4.147 18 C -0.016 4.016 19 C -0.665 4.665 20 S 2.494 3.506 21 O -0.928 6.928 22 O -0.940 6.940 23 C -0.567 4.567 24 C -0.148 4.148 25 C -0.146 4.146 26 C 0.024 3.976 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -6.739 21.641 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.030 4.030 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.332 3.668 14 O -0.409 6.409 15 C -0.135 4.135 16 C -0.071 4.071 17 C -0.165 4.165 18 C -0.035 4.035 19 C -0.752 4.752 20 S 2.674 3.326 21 O -0.925 6.925 22 O -0.938 6.938 23 C -0.677 4.677 24 C -0.206 4.206 25 C -0.204 4.204 26 C 0.005 3.995 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.971 -6.495 21.396 22.557 hybrid contribution -0.010 0.142 -0.656 0.671 sum -2.981 -6.354 20.740 21.895 Atomic orbital electron populations 1.22357 0.96600 1.01461 1.02875 1.21692 0.93669 0.84393 1.03261 1.48207 1.61697 1.13336 1.08469 1.19336 0.97183 0.92805 0.77931 1.21403 0.99463 1.30253 1.05917 0.92380 1.24921 0.97406 0.94779 0.96819 1.69924 1.34596 1.31243 1.17527 0.86551 0.84211 0.78241 0.78410 1.20184 1.21132 1.20033 1.18101 0.78720 0.86944 0.83026 1.90771 1.48833 1.15521 1.85808 1.20401 0.96260 0.99621 0.97208 1.22284 0.97867 0.91133 0.95775 1.21219 0.99062 1.01298 0.94955 1.21022 0.90873 0.92839 0.98730 1.30408 1.20196 1.10850 1.13738 1.05714 0.74937 0.76240 0.75701 1.93594 1.50183 1.84016 1.64746 1.93550 1.86298 1.38920 1.74989 1.30000 1.08962 1.15717 1.13011 1.21748 1.03783 0.95044 0.99976 1.21687 0.95471 1.04004 0.99254 1.20987 0.96390 0.92644 0.89527 0.91382 0.91750 0.92482 0.89775 0.90918 0.94697 0.93545 0.92602 0.83284 0.84572 0.84099 0.84310 0.90602 0.90110 0.90168 0.89664 0.91016 0.90466 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.15 37.16 0.34 -1.86 16 2 C 0.09 1.49 5.60 -4.04 -0.02 1.47 16 3 N -0.59 -12.33 2.46 -176.17 -0.43 -12.77 16 4 C 0.25 6.35 5.22 -5.19 -0.03 6.32 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.55 11.55 7.27 -12.33 -0.09 11.46 16 14 O -0.53 -13.35 16.54 5.32 0.09 -13.26 16 15 C -0.13 -2.14 5.08 -104.97 -0.53 -2.68 16 16 C -0.05 -0.66 7.42 -39.19 -0.29 -0.95 16 17 C -0.15 -1.48 10.03 -39.64 -0.40 -1.88 16 18 C -0.02 -0.16 9.47 -39.49 -0.37 -0.54 16 19 C -0.67 -8.34 4.87 -39.64 -0.19 -8.53 16 20 S 2.49 28.90 4.67 -107.50 -0.50 28.40 16 21 O -0.93 -14.05 17.11 -57.54 -0.98 -15.03 16 22 O -0.94 -12.47 17.11 -57.54 -0.98 -13.45 16 23 C -0.57 -4.39 3.48 -26.74 -0.09 -4.48 16 24 C -0.15 -1.25 8.89 37.15 0.33 -0.92 16 25 C -0.15 -0.97 9.20 37.16 0.34 -0.63 16 26 C 0.02 0.37 8.09 -39.18 -0.32 0.05 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.69 6.33 -51.93 -0.33 0.36 16 30 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 31 H 0.07 1.02 5.10 -51.93 -0.26 0.76 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.15 1.67 3.70 -52.49 -0.19 1.47 16 36 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.14 1.14 7.55 -52.49 -0.40 0.74 16 38 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.69 6.58 -51.93 -0.34 0.35 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.15 2.41 7.57 -52.48 -0.40 2.01 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -36.90 380.33 -9.61 -46.51 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.49 Total: -0.60 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.75 Total: -16.83 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.30 Total: -38.41 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.88 Total: -41.75 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 28.90 SS G_CDS: -0.50 Total: 28.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.90 -9.61 -46.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546744818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.073 kcal (2) G-P(sol) polarization free energy of solvation -36.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds