Wall clock time and date at job start Tue Mar 31 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47194 * 2 1 4 4 S 1.81399 * 109.47337 * 240.00126 * 2 1 3 5 5 O 1.42099 * 110.54215 * 291.62414 * 4 2 1 6 6 O 1.42103 * 110.54078 * 68.37594 * 4 2 1 7 7 C 1.76203 * 104.44920 * 180.02562 * 4 2 1 8 8 C 1.38383 * 119.92476 * 269.72119 * 7 4 2 9 9 C 1.38343 * 120.29136 * 179.76418 * 8 7 4 10 10 C 1.37982 * 120.14131 * 0.51195 * 9 8 7 11 11 C 1.39559 * 119.85547 * 359.74865 * 10 9 8 12 12 C 1.47843 * 120.14454 * 179.97438 * 11 10 9 13 13 O 1.21553 * 119.99911 * 148.18044 * 12 11 10 14 14 N 1.34778 * 120.00085 * 328.17456 * 12 11 10 15 15 C 1.46505 * 119.99871 * 4.31358 * 14 12 11 16 16 C 1.46492 * 120.00300 * 184.31747 * 14 12 11 17 17 H 1.09011 * 109.47218 * 359.97438 * 16 14 12 18 18 C 1.53003 * 109.47384 * 240.00031 * 16 14 12 19 19 C 1.50698 * 109.47485 * 119.99743 * 16 14 12 20 20 H 1.07996 * 120.00208 * 0.02562 * 19 16 14 21 21 C 1.37886 * 120.00176 * 180.02562 * 19 16 14 22 22 N 1.31514 * 119.99672 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99825 * 180.02562 * 21 19 16 24 24 H 1.48504 * 109.47115 * 60.00253 * 23 21 19 25 25 H 1.48502 * 109.46911 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47018 * 299.99922 * 23 21 19 27 27 C 1.37939 * 119.93085 * 90.00039 * 7 4 2 28 28 H 1.09001 * 109.47127 * 60.00069 * 1 2 3 29 29 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47280 * 299.99870 * 1 2 3 31 31 H 1.09001 * 109.47127 * 119.99931 * 2 1 3 32 32 H 1.08994 * 109.47577 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47027 * 299.99991 * 3 2 1 34 34 H 1.09002 * 109.46666 * 59.99684 * 3 2 1 35 35 H 1.08001 * 119.85848 * 0.02562 * 8 7 4 36 36 H 1.07999 * 119.93199 * 180.26052 * 9 8 7 37 37 H 1.08003 * 120.07318 * 179.76005 * 10 9 8 38 38 H 1.09000 * 109.46728 * 94.39260 * 15 14 12 39 39 H 1.08997 * 109.47044 * 214.39588 * 15 14 12 40 40 H 1.08997 * 109.47516 * 334.39749 * 15 14 12 41 41 H 1.08998 * 109.47480 * 179.97438 * 18 16 14 42 42 H 1.08994 * 109.46931 * 299.99772 * 18 16 14 43 43 H 1.09005 * 109.46803 * 59.99731 * 18 16 14 44 44 H 0.97004 * 119.99324 * 180.02562 * 22 21 19 45 45 H 1.08007 * 120.06922 * 359.97438 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 -1.4811 5 8 1.8386 -2.2431 -1.4113 6 8 1.8386 -0.1005 -2.6483 7 6 3.8899 -0.7786 -1.3471 8 6 4.5787 0.2872 -1.8991 9 6 5.9563 0.3574 -1.7941 10 6 6.6536 -0.6418 -1.1466 11 6 5.9656 -1.7221 -0.5923 12 6 6.7064 -2.7965 0.1024 13 8 6.1925 -3.3851 1.0335 14 7 7.9515 -3.1235 -0.2968 15 6 8.6073 -2.3526 -1.3561 16 6 8.6491 -4.2499 0.3283 17 1 8.0085 -4.6973 1.0885 18 6 9.9409 -3.7517 0.9795 19 6 8.9800 -5.2803 -0.7203 20 1 8.6993 -5.1129 -1.7496 21 6 9.6414 -6.4371 -0.3656 22 7 9.9829 -6.6413 0.8879 23 14 10.0523 -7.7140 -1.6656 24 1 10.9260 -7.1040 -2.6999 25 1 10.7593 -8.8558 -1.0318 26 1 8.7988 -8.1971 -2.2985 27 6 4.5751 -1.7841 -0.6972 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.0380 1.0699 -2.4105 36 1 6.4876 1.1940 -2.2234 37 1 7.7295 -0.5878 -1.0686 38 1 9.2254 -1.5740 -0.9091 39 1 9.2332 -3.0155 -1.9535 40 1 7.8510 -1.8947 -1.9936 41 1 10.4597 -4.5897 1.4451 42 1 10.5815 -3.3042 0.2198 43 1 9.7014 -3.0064 1.7380 44 1 10.4484 -7.4549 1.1373 45 1 4.0367 -2.6175 -0.2704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548429729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:15 Heat of formation + Delta-G solvation = -62.777890 kcal Electronic energy + Delta-G solvation = -27722.470701 eV Core-core repulsion = 23833.298782 eV Total energy + Delta-G solvation = -3889.171919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.18419 -38.15164 -37.30127 -36.10584 -35.53278 -35.40606 -33.23760 -31.62297 -31.25860 -29.17052 -27.77701 -26.58277 -25.28245 -23.97727 -23.43786 -22.70787 -21.20988 -19.52760 -18.72435 -17.65813 -16.97957 -16.76173 -16.38305 -16.08171 -15.71918 -15.47828 -15.15518 -14.77473 -14.52253 -14.18162 -13.94867 -13.73705 -13.57169 -13.20193 -13.08800 -12.79132 -12.68201 -12.57505 -12.34052 -12.24344 -12.16239 -11.89540 -11.82969 -11.73877 -11.66928 -11.35071 -11.11618 -10.90634 -10.84050 -10.74092 -10.51617 -10.32475 -10.20658 -9.46886 -9.26913 -9.21787 -9.01713 -8.47149 -7.72234 -6.11897 -4.20449 -0.17281 0.60097 0.98522 2.64689 2.94729 3.26206 3.31485 3.33217 3.54027 3.69194 3.82713 3.92032 4.13907 4.31546 4.37145 4.65138 4.67738 4.68091 4.82857 5.00783 5.03509 5.12626 5.17054 5.19677 5.25654 5.37296 5.44414 5.55630 5.57011 5.62134 5.69786 5.81423 5.84662 6.02623 6.13924 6.26273 6.57588 6.68976 6.76060 6.98429 7.30157 7.44771 7.65147 7.94561 8.11901 8.38961 8.73283 8.90613 9.46120 10.93488 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.002847 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.136563 B = 9831.322685 C =10172.263150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.571 4.571 3 C -0.144 4.144 4 S 2.496 3.504 5 O -0.932 6.932 6 O -0.936 6.936 7 C -0.668 4.668 8 C -0.012 4.012 9 C -0.149 4.149 10 C -0.049 4.049 11 C -0.135 4.135 12 C 0.543 3.457 13 O -0.543 6.543 14 N -0.582 5.582 15 C 0.064 3.936 16 C 0.258 3.742 17 H 0.065 0.935 18 C -0.146 4.146 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.027 3.973 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.030 0.970 43 H 0.012 0.988 44 H 0.265 0.735 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 19.498 -3.284 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.681 4.681 3 C -0.202 4.202 4 S 2.676 3.324 5 O -0.929 6.929 6 O -0.933 6.933 7 C -0.755 4.755 8 C -0.031 4.031 9 C -0.168 4.168 10 C -0.067 4.067 11 C -0.139 4.139 12 C 0.329 3.671 13 O -0.423 6.423 14 N -0.311 5.311 15 C -0.079 4.079 16 C 0.158 3.842 17 H 0.083 0.917 18 C -0.205 4.205 19 C -0.569 4.569 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C 0.008 3.992 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.171 0.829 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.031 18.618 -3.323 22.967 hybrid contribution 1.068 -0.442 -0.146 1.165 sum -11.963 18.176 -3.469 22.035 Atomic orbital electron populations 1.21678 0.89770 1.04091 1.04826 1.30029 1.06691 1.10115 1.21247 1.21696 1.02064 0.91673 1.04721 1.05659 0.74452 0.75366 0.76951 1.93599 1.83274 1.29295 1.86769 1.93544 1.83385 1.73259 1.43129 1.30415 1.25565 1.04582 1.14961 1.21046 0.94988 0.94756 0.92359 1.21255 0.94144 0.99659 1.01750 1.22381 1.01660 0.91484 0.91194 1.20375 0.94348 0.97197 1.01986 1.18145 0.82088 0.82880 0.83940 1.90750 1.68210 1.54129 1.29168 1.48183 1.14230 1.32462 1.36269 1.22238 0.97908 0.96494 0.91248 1.19014 0.89979 0.81429 0.93735 0.91681 1.22085 0.99500 1.00587 0.98282 1.21265 1.38097 1.02958 0.94581 0.92191 1.24888 0.95332 0.97856 0.95582 1.69868 1.39728 1.26710 1.16151 0.86528 0.78597 0.80756 0.81364 1.20207 1.21107 1.20126 1.21009 0.93441 0.95072 0.89701 0.90803 0.90689 0.89666 0.83932 0.90877 0.90459 0.90176 0.84014 0.84495 0.82934 0.93107 0.89919 0.91311 0.88677 0.95098 0.96931 0.92529 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.57 -4.25 3.44 -26.73 -0.09 -4.35 16 3 C -0.14 -0.86 8.98 37.16 0.33 -0.53 16 4 S 2.50 28.22 4.65 -107.50 -0.50 27.72 16 5 O -0.93 -14.04 17.12 -57.54 -0.98 -15.02 16 6 O -0.94 -11.93 17.00 -57.54 -0.98 -12.91 16 7 C -0.67 -8.25 5.05 -39.64 -0.20 -8.45 16 8 C -0.01 -0.13 8.54 -39.49 -0.34 -0.47 16 9 C -0.15 -1.48 10.03 -39.64 -0.40 -1.88 16 10 C -0.05 -0.61 7.44 -39.18 -0.29 -0.90 16 11 C -0.13 -2.21 5.47 -104.97 -0.57 -2.78 16 12 C 0.54 11.46 7.44 -12.33 -0.09 11.37 16 13 O -0.54 -13.49 16.09 5.32 0.09 -13.41 16 14 N -0.58 -12.32 2.75 -176.38 -0.49 -12.81 16 15 C 0.06 1.04 7.83 59.85 0.47 1.51 16 16 C 0.26 6.54 2.63 -69.09 -0.18 6.35 16 17 H 0.07 1.91 6.91 -51.92 -0.36 1.56 16 18 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 19 C -0.53 -14.24 8.03 -34.44 -0.28 -14.52 16 20 H 0.06 1.58 7.26 -52.49 -0.38 1.20 16 21 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 22 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 23 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.03 0.42 9.02 -39.19 -0.35 0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.07 0.42 6.73 -51.93 -0.35 0.07 16 33 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.14 1.11 7.55 -52.49 -0.40 0.71 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.15 1.67 4.79 -52.48 -0.25 1.42 16 38 H 0.05 0.69 7.43 -51.93 -0.39 0.31 16 39 H 0.08 1.43 6.97 -51.93 -0.36 1.07 16 40 H 0.07 0.94 4.72 -51.93 -0.25 0.69 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 42 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.15 2.40 7.46 -52.48 -0.39 2.01 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -35.48 374.07 -9.38 -44.86 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.35 Total: 0.76 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.41 Total: -16.54 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.14 Total: -37.08 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.88 Total: -41.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 28.22 SS G_CDS: -0.50 Total: 27.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.48 -9.38 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548429729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.915 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds