Wall clock time and date at job start Tue Mar 31 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47194 * 2 1 4 4 S 1.81399 * 109.47337 * 240.00126 * 2 1 3 5 5 O 1.42099 * 110.54215 * 291.62414 * 4 2 1 6 6 O 1.42103 * 110.54078 * 68.37594 * 4 2 1 7 7 C 1.76203 * 104.44920 * 180.02562 * 4 2 1 8 8 C 1.38383 * 119.92476 * 269.72119 * 7 4 2 9 9 C 1.38343 * 120.29136 * 179.76418 * 8 7 4 10 10 C 1.37982 * 120.14131 * 0.51195 * 9 8 7 11 11 C 1.39559 * 119.85547 * 359.74865 * 10 9 8 12 12 C 1.47843 * 120.14454 * 179.97438 * 11 10 9 13 13 O 1.21553 * 119.99911 * 148.18044 * 12 11 10 14 14 N 1.34778 * 120.00085 * 328.17456 * 12 11 10 15 15 C 1.46505 * 119.99871 * 4.31358 * 14 12 11 16 16 C 1.46492 * 120.00300 * 184.31747 * 14 12 11 17 17 H 1.09011 * 109.47218 * 359.97438 * 16 14 12 18 18 C 1.53003 * 109.47384 * 240.00031 * 16 14 12 19 19 C 1.50698 * 109.47485 * 119.99743 * 16 14 12 20 20 H 1.07996 * 120.00208 * 0.02562 * 19 16 14 21 21 C 1.37886 * 120.00176 * 180.02562 * 19 16 14 22 22 N 1.31514 * 119.99672 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99825 * 180.02562 * 21 19 16 24 24 H 1.48504 * 109.47115 * 60.00253 * 23 21 19 25 25 H 1.48502 * 109.46911 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47018 * 299.99922 * 23 21 19 27 27 C 1.37939 * 119.93085 * 90.00039 * 7 4 2 28 28 H 1.09001 * 109.47127 * 60.00069 * 1 2 3 29 29 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47280 * 299.99870 * 1 2 3 31 31 H 1.09001 * 109.47127 * 119.99931 * 2 1 3 32 32 H 1.08994 * 109.47577 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47027 * 299.99991 * 3 2 1 34 34 H 1.09002 * 109.46666 * 59.99684 * 3 2 1 35 35 H 1.08001 * 119.85848 * 0.02562 * 8 7 4 36 36 H 1.07999 * 119.93199 * 180.26052 * 9 8 7 37 37 H 1.08003 * 120.07318 * 179.76005 * 10 9 8 38 38 H 1.09000 * 109.46728 * 94.39260 * 15 14 12 39 39 H 1.08997 * 109.47044 * 214.39588 * 15 14 12 40 40 H 1.08997 * 109.47516 * 334.39749 * 15 14 12 41 41 H 1.08998 * 109.47480 * 179.97438 * 18 16 14 42 42 H 1.08994 * 109.46931 * 299.99772 * 18 16 14 43 43 H 1.09005 * 109.46803 * 59.99731 * 18 16 14 44 44 H 0.97004 * 119.99324 * 180.02562 * 22 21 19 45 45 H 1.08007 * 120.06922 * 359.97438 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 -1.4811 5 8 1.8386 -2.2431 -1.4113 6 8 1.8386 -0.1005 -2.6483 7 6 3.8899 -0.7786 -1.3471 8 6 4.5787 0.2872 -1.8991 9 6 5.9563 0.3574 -1.7941 10 6 6.6536 -0.6418 -1.1466 11 6 5.9656 -1.7221 -0.5923 12 6 6.7064 -2.7965 0.1024 13 8 6.1925 -3.3851 1.0335 14 7 7.9515 -3.1235 -0.2968 15 6 8.6073 -2.3526 -1.3561 16 6 8.6491 -4.2499 0.3283 17 1 8.0085 -4.6973 1.0885 18 6 9.9409 -3.7517 0.9795 19 6 8.9800 -5.2803 -0.7203 20 1 8.6993 -5.1129 -1.7496 21 6 9.6414 -6.4371 -0.3656 22 7 9.9829 -6.6413 0.8879 23 14 10.0523 -7.7140 -1.6656 24 1 10.9260 -7.1040 -2.6999 25 1 10.7593 -8.8558 -1.0318 26 1 8.7988 -8.1971 -2.2985 27 6 4.5751 -1.7841 -0.6972 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.0380 1.0699 -2.4105 36 1 6.4876 1.1940 -2.2234 37 1 7.7295 -0.5878 -1.0686 38 1 9.2254 -1.5740 -0.9091 39 1 9.2332 -3.0155 -1.9535 40 1 7.8510 -1.8947 -1.9936 41 1 10.4597 -4.5897 1.4451 42 1 10.5815 -3.3042 0.2198 43 1 9.7014 -3.0064 1.7380 44 1 10.4484 -7.4549 1.1373 45 1 4.0367 -2.6175 -0.2704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548429729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:14 Heat of formation + Delta-G solvation = -87.802051 kcal Electronic energy + Delta-G solvation = -27723.555830 eV Core-core repulsion = 23833.298782 eV Total energy + Delta-G solvation = -3890.257048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52333 -39.46644 -38.27555 -37.30554 -37.08087 -35.97634 -35.05368 -32.98833 -32.29180 -30.86904 -28.27014 -27.99367 -27.34826 -25.27047 -24.39279 -23.40435 -22.73040 -20.91430 -19.79246 -18.90525 -18.46538 -17.86385 -17.78630 -17.19892 -17.00443 -16.82692 -16.35793 -16.22938 -15.71182 -15.31672 -15.08067 -14.75875 -14.42422 -14.30687 -14.23049 -14.18041 -13.85983 -13.67507 -13.51877 -13.27531 -13.23465 -13.09233 -13.00413 -12.84057 -12.79132 -12.73685 -12.48402 -12.37254 -12.32890 -12.22952 -12.15299 -11.81606 -11.27216 -11.26670 -10.86688 -10.56123 -10.35108 -10.16164 -9.44052 -8.19142 -6.36128 -1.01158 -0.39135 -0.06901 1.38846 1.41840 1.48852 1.68187 1.76707 2.14862 2.41052 2.48734 2.86728 3.03663 3.09122 3.44487 3.56283 3.65637 3.76713 3.87507 4.02769 4.17186 4.28537 4.32505 4.45250 4.59821 4.62587 4.64789 4.70565 4.74428 4.75123 4.86032 4.89455 4.91453 4.94702 5.00672 5.09259 5.11932 5.15304 5.23424 5.42939 5.50405 5.60948 5.68969 5.98141 6.10505 6.66613 6.70473 7.17944 7.37447 8.85318 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.002847 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.136563 B = 9831.322685 C =10172.263150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.543 4.543 3 C -0.151 4.151 4 S 2.489 3.511 5 O -0.984 6.984 6 O -0.952 6.952 7 C -0.667 4.667 8 C -0.004 4.004 9 C -0.129 4.129 10 C -0.047 4.047 11 C -0.160 4.160 12 C 0.533 3.467 13 O -0.601 6.601 14 N -0.589 5.589 15 C 0.059 3.941 16 C 0.261 3.739 17 H 0.008 0.992 18 C -0.130 4.130 19 C -0.545 4.545 20 H 0.060 0.940 21 C 0.017 3.983 22 N -0.915 5.915 23 Si 0.965 3.035 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.005 3.995 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.177 0.823 36 H 0.187 0.813 37 H 0.172 0.828 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.266 0.734 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 23.370 -5.202 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.658 4.658 3 C -0.209 4.209 4 S 2.673 3.327 5 O -0.982 6.982 6 O -0.950 6.950 7 C -0.753 4.753 8 C -0.023 4.023 9 C -0.147 4.147 10 C -0.065 4.065 11 C -0.164 4.164 12 C 0.322 3.678 13 O -0.484 6.484 14 N -0.318 5.318 15 C -0.082 4.082 16 C 0.160 3.840 17 H 0.026 0.974 18 C -0.189 4.189 19 C -0.583 4.583 20 H 0.078 0.922 21 C -0.183 4.183 22 N -0.554 5.554 23 Si 0.789 3.211 24 H -0.184 1.184 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.015 4.015 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.170 0.830 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.194 0.806 36 H 0.205 0.795 37 H 0.189 0.811 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.823 22.504 -5.312 26.440 hybrid contribution 0.889 -1.522 0.489 1.829 sum -11.933 20.982 -4.823 24.615 Atomic orbital electron populations 1.21881 0.88608 1.04453 1.06575 1.29834 1.07488 1.10704 1.17724 1.21877 1.02531 0.90144 1.06358 1.05815 0.73975 0.74606 0.78289 1.93537 1.83760 1.32877 1.87981 1.93509 1.83267 1.72933 1.45252 1.30494 1.26079 1.04332 1.14384 1.21606 0.95685 0.94284 0.90696 1.21779 0.93875 0.99592 0.99447 1.22577 1.02624 0.90598 0.90656 1.20014 0.94380 0.97574 1.04424 1.18963 0.81921 0.83472 0.83447 1.90696 1.69343 1.56560 1.31798 1.48156 1.14561 1.31873 1.37193 1.22571 0.98752 0.96536 0.90377 1.18607 0.89840 0.82965 0.92625 0.97392 1.21856 0.98511 0.99799 0.98739 1.21535 1.38083 1.03862 0.94817 0.92163 1.25725 0.95209 0.99777 0.97547 1.70012 1.40232 1.27237 1.17908 0.85512 0.78249 0.78239 0.79051 1.18419 1.20673 1.20580 1.20836 0.93338 0.95796 0.91521 0.89828 0.91211 0.87102 0.83019 0.90412 0.89316 0.88059 0.80580 0.79533 0.81080 0.89719 0.91073 0.88415 0.91275 0.93006 0.95928 0.92486 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.20 71.98 0.66 -0.98 16 2 C -0.54 -7.06 3.44 30.59 0.11 -6.96 16 3 C -0.15 -1.25 8.98 71.98 0.65 -0.60 16 4 S 2.49 55.38 4.65 -56.49 -0.26 55.12 16 5 O -0.98 -31.55 17.12 -127.65 -2.18 -33.73 16 6 O -0.95 -22.90 17.00 -127.65 -2.17 -25.07 16 7 C -0.67 -15.79 5.05 22.23 0.11 -15.68 16 8 C 0.00 -0.07 8.54 22.33 0.19 0.12 16 9 C -0.13 -1.91 10.03 22.23 0.22 -1.69 16 10 C -0.05 -1.02 7.44 22.53 0.17 -0.86 16 11 C -0.16 -5.28 5.47 -20.09 -0.11 -5.39 16 12 C 0.53 23.70 7.44 86.79 0.65 24.35 16 13 O -0.60 -32.55 16.09 -3.88 -0.06 -32.61 16 14 N -0.59 -25.61 2.75 -830.21 -2.29 -27.89 16 15 C 0.06 1.81 7.83 127.77 1.00 2.81 16 16 C 0.26 13.86 2.63 44.25 0.12 13.97 16 17 H 0.01 0.52 6.91 -2.38 -0.02 0.50 16 18 C -0.13 -6.26 8.97 71.98 0.65 -5.62 16 19 C -0.54 -30.11 8.03 25.60 0.21 -29.91 16 20 H 0.06 3.24 7.26 -2.91 -0.02 3.22 16 21 C 0.02 0.97 5.30 84.66 0.45 1.42 16 22 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 23 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 C 0.01 0.16 9.02 22.53 0.20 0.36 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 0.59 6.73 -2.39 -0.02 0.58 16 33 H 0.09 0.57 8.11 -2.39 -0.02 0.55 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.18 1.80 7.55 -2.91 -0.02 1.78 16 36 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.17 3.06 4.79 -2.91 -0.01 3.04 16 38 H 0.08 2.03 7.43 -2.39 -0.02 2.01 16 39 H 0.07 2.36 6.97 -2.39 -0.02 2.35 16 40 H 0.10 2.42 4.72 -2.39 -0.01 2.41 16 41 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 42 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 43 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.12 4.42 7.46 -2.91 -0.02 4.40 16 Total: -1.00 -84.87 374.07 1.57 -83.30 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.00 Total: 12.87 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 5.26 Total: -24.65 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.04 Total: -80.83 kcal Atomic # 8 Polarization: -87.00 SS G_CDS: -4.42 Total: -91.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 55.38 SS G_CDS: -0.26 Total: 55.12 kcal Total: -84.87 1.57 -83.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548429729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.501 kcal (2) G-P(sol) polarization free energy of solvation -84.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds