Wall clock time and date at job start Tue Mar 31 2020 22:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46942 * 2 1 4 4 S 1.81400 * 109.47140 * 240.00757 * 2 1 3 5 5 O 1.42098 * 110.54347 * 56.61601 * 4 2 1 6 6 O 1.42094 * 110.54253 * 193.37454 * 4 2 1 7 7 C 1.76205 * 104.44493 * 304.99553 * 4 2 1 8 8 C 1.38384 * 119.92805 * 269.72160 * 7 4 2 9 9 C 1.38336 * 120.29087 * 179.76686 * 8 7 4 10 10 C 1.37972 * 120.14795 * 0.51104 * 9 8 7 11 11 C 1.39564 * 119.85158 * 359.74986 * 10 9 8 12 12 C 1.47843 * 120.14538 * 179.97438 * 11 10 9 13 13 O 1.21548 * 119.99761 * 148.07818 * 12 11 10 14 14 N 1.34774 * 119.99706 * 328.08243 * 12 11 10 15 15 C 1.46495 * 120.00333 * 4.30761 * 14 12 11 16 16 C 1.46511 * 119.99744 * 184.30961 * 14 12 11 17 17 H 1.08998 * 109.46618 * 359.97438 * 16 14 12 18 18 C 1.52999 * 109.47057 * 119.99902 * 16 14 12 19 19 C 1.50697 * 109.46840 * 239.99954 * 16 14 12 20 20 H 1.08005 * 120.00628 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99863 * 179.97438 * 19 16 14 22 22 N 1.31507 * 120.00075 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99923 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.47428 * 60.00166 * 23 21 19 25 25 H 1.48495 * 109.46951 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47331 * 300.00018 * 23 21 19 27 27 C 1.37936 * 119.92775 * 90.00213 * 7 4 2 28 28 H 1.08993 * 109.47796 * 59.99534 * 1 2 3 29 29 H 1.09006 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47030 * 299.99101 * 1 2 3 31 31 H 1.08997 * 109.47672 * 119.99964 * 2 1 3 32 32 H 1.09003 * 109.46979 * 60.00833 * 3 2 1 33 33 H 1.09003 * 109.47147 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47641 * 300.00424 * 3 2 1 35 35 H 1.08003 * 119.85155 * 0.02562 * 8 7 4 36 36 H 1.08000 * 119.92358 * 180.26204 * 9 8 7 37 37 H 1.07998 * 120.07815 * 179.72477 * 10 9 8 38 38 H 1.08999 * 109.47385 * 94.53119 * 15 14 12 39 39 H 1.09001 * 109.47031 * 214.52540 * 15 14 12 40 40 H 1.09004 * 109.47311 * 334.52830 * 15 14 12 41 41 H 1.09001 * 109.47195 * 59.99988 * 18 16 14 42 42 H 1.09004 * 109.46799 * 179.97438 * 18 16 14 43 43 H 1.08996 * 109.47051 * 299.99930 * 18 16 14 44 44 H 0.97002 * 120.00516 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.07473 * 359.95423 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8549 -1.4812 5 8 1.6105 -0.2497 -2.6552 6 8 3.5213 -1.1408 -1.3608 7 6 1.3585 -2.4358 -1.4239 8 6 1.9833 -3.4887 -0.7790 9 6 1.3786 -4.7317 -0.7253 10 6 0.1520 -4.9321 -1.3244 11 6 -0.4811 -3.8758 -1.9811 12 6 -1.7953 -4.0834 -2.6258 13 8 -2.5979 -3.1720 -2.6767 14 7 -2.1034 -5.2831 -3.1568 15 6 -1.1759 -6.4079 -3.0128 16 6 -3.3659 -5.4625 -3.8783 17 1 -3.9191 -4.5233 -3.8813 18 6 -3.0741 -5.8878 -5.3187 19 6 -4.1870 -6.5265 -3.1968 20 1 -3.8065 -7.0202 -2.3147 21 6 -5.4242 -6.8699 -3.6993 22 7 -5.8879 -6.2685 -4.7729 23 14 -6.4418 -8.1894 -2.8549 24 1 -6.7244 -7.7775 -1.4565 25 1 -7.7220 -8.3702 -3.5853 26 1 -5.6884 -9.4690 -2.8513 27 6 0.1321 -2.6226 -2.0270 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.9454 -3.3382 -0.3119 36 1 1.8696 -5.5482 -0.2167 37 1 -0.3171 -5.9041 -1.2856 38 1 -1.4584 -7.0029 -2.1443 39 1 -1.2165 -7.0292 -3.9075 40 1 -0.1627 -6.0286 -2.8794 41 1 -2.5210 -6.8271 -5.3153 42 1 -4.0135 -6.0217 -5.8553 43 1 -2.4802 -5.1182 -5.8116 44 1 -6.7584 -6.5098 -5.1263 45 1 -0.3528 -1.8011 -2.5333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548429730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:19 Heat of formation + Delta-G solvation = -62.060008 kcal Electronic energy + Delta-G solvation = -27806.774605 eV Core-core repulsion = 23917.633815 eV Total energy + Delta-G solvation = -3889.140790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.18957 -38.14699 -37.31995 -36.12236 -35.53834 -35.37240 -33.23855 -31.63100 -31.27778 -29.14837 -27.72435 -26.58587 -25.28496 -23.95524 -23.49809 -22.63068 -21.23094 -19.52436 -18.69290 -17.68269 -16.98079 -16.71907 -16.43874 -16.13764 -15.68516 -15.40822 -15.16039 -14.66634 -14.59699 -14.25364 -13.98034 -13.70677 -13.53322 -13.15560 -13.10509 -12.82502 -12.69108 -12.48652 -12.36274 -12.25985 -12.18622 -11.84371 -11.77518 -11.75866 -11.60042 -11.39137 -11.12395 -10.92816 -10.80794 -10.74069 -10.51504 -10.33518 -10.21108 -9.45033 -9.26546 -9.22695 -9.01410 -8.48139 -7.71908 -6.12136 -4.20807 -0.18101 0.60021 0.97653 2.63383 2.94658 3.24158 3.29847 3.30883 3.55773 3.68562 3.82884 3.88182 4.15764 4.32246 4.35985 4.65524 4.67684 4.69452 4.84121 5.01000 5.10069 5.12637 5.19197 5.25834 5.31409 5.40768 5.43519 5.55215 5.57533 5.68887 5.79953 5.83071 5.89918 6.03262 6.13774 6.15898 6.57484 6.70956 6.76806 6.98234 7.31765 7.43380 7.64595 7.94276 8.11722 8.39044 8.73513 8.90114 9.45556 10.93233 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002793 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.924003 B =10022.980057 C =10325.838328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.567 4.567 3 C -0.146 4.146 4 S 2.495 3.505 5 O -0.930 6.930 6 O -0.940 6.940 7 C -0.669 4.669 8 C -0.013 4.013 9 C -0.149 4.149 10 C -0.048 4.048 11 C -0.136 4.136 12 C 0.542 3.458 13 O -0.542 6.542 14 N -0.582 5.582 15 C 0.068 3.932 16 C 0.258 3.742 17 H 0.066 0.934 18 C -0.149 4.149 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.028 3.972 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.096 0.904 43 H 0.013 0.987 44 H 0.265 0.735 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.396 7.743 10.940 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.677 4.677 3 C -0.204 4.204 4 S 2.675 3.325 5 O -0.927 6.927 6 O -0.938 6.938 7 C -0.756 4.756 8 C -0.032 4.032 9 C -0.167 4.167 10 C -0.066 4.066 11 C -0.140 4.140 12 C 0.329 3.671 13 O -0.421 6.421 14 N -0.312 5.312 15 C -0.075 4.075 16 C 0.158 3.842 17 H 0.084 0.916 18 C -0.207 4.207 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 C 0.008 3.992 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.114 0.886 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.326 8.478 10.113 21.779 hybrid contribution -1.081 -1.458 1.052 2.098 sum 16.246 7.020 11.165 20.925 Atomic orbital electron populations 1.21746 0.89246 1.04499 1.05046 1.30002 1.07724 1.09323 1.20657 1.21688 1.01743 0.91816 1.05155 1.05672 0.74845 0.74862 0.77094 1.93584 1.80356 1.76124 1.42640 1.93551 1.29284 1.83895 1.87034 1.30403 1.08751 1.21787 1.14616 1.21040 0.97821 0.92002 0.92387 1.21256 0.96224 0.97634 1.01621 1.22405 0.94036 0.99217 0.90967 1.20392 0.96889 0.94603 1.02134 1.18135 0.85816 0.83578 0.79581 1.90753 1.50022 1.42124 1.59166 1.48183 1.21676 1.08284 1.53092 1.22200 0.92254 0.90382 1.02702 1.19018 0.78349 0.98829 0.87956 0.91640 1.22112 1.02296 0.97519 0.98776 1.21240 1.02152 1.20995 1.12281 0.92322 1.24890 0.97311 0.96549 0.94963 1.69860 1.19106 1.41706 1.21790 0.86533 0.79397 0.81699 0.79611 1.20233 1.21117 1.20230 1.20997 0.90591 0.97073 0.90513 0.90189 0.90609 0.90097 0.84289 0.89652 0.91018 0.90486 0.84095 0.84496 0.82833 0.92469 0.90791 0.91447 0.95001 0.88597 0.96809 0.92523 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.89 37.15 0.33 -0.87 16 2 C -0.57 -4.21 3.48 -26.73 -0.09 -4.30 16 3 C -0.15 -0.92 9.20 37.16 0.34 -0.58 16 4 S 2.50 27.59 4.67 -107.50 -0.50 27.09 16 5 O -0.93 -13.31 17.11 -57.54 -0.98 -14.29 16 6 O -0.94 -12.06 17.11 -57.54 -0.98 -13.05 16 7 C -0.67 -8.10 4.87 -39.64 -0.19 -8.29 16 8 C -0.01 -0.14 9.47 -39.49 -0.37 -0.51 16 9 C -0.15 -1.50 10.03 -39.64 -0.40 -1.90 16 10 C -0.05 -0.61 7.44 -39.18 -0.29 -0.90 16 11 C -0.14 -2.19 5.47 -104.97 -0.57 -2.77 16 12 C 0.54 11.33 7.44 -12.33 -0.09 11.24 16 13 O -0.54 -13.32 16.09 5.32 0.09 -13.24 16 14 N -0.58 -12.26 2.75 -176.38 -0.49 -12.75 16 15 C 0.07 1.09 8.08 59.84 0.48 1.58 16 16 C 0.26 6.51 2.63 -69.08 -0.18 6.33 16 17 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 18 C -0.15 -3.52 8.94 37.16 0.33 -3.18 16 19 C -0.53 -14.01 8.37 -34.44 -0.29 -14.29 16 20 H 0.06 1.51 7.52 -52.48 -0.39 1.12 16 21 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 23 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.03 0.41 8.00 -39.19 -0.31 0.10 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.14 1.12 7.55 -52.48 -0.40 0.72 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.77 4.80 -52.49 -0.25 1.52 16 38 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 39 H 0.07 1.20 6.44 -51.93 -0.33 0.87 16 40 H 0.07 0.89 4.72 -51.93 -0.24 0.64 16 41 H 0.03 0.69 6.69 -51.93 -0.35 0.34 16 42 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 45 H 0.15 2.29 7.46 -52.48 -0.39 1.90 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -34.99 372.93 -9.32 -44.31 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.27 Total: 1.47 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.41 Total: -16.69 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.14 Total: -36.91 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.88 Total: -40.57 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 27.59 SS G_CDS: -0.50 Total: 27.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.99 -9.32 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548429730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.751 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds