Wall clock time and date at job start Tue Mar 31 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46942 * 2 1 4 4 S 1.81400 * 109.47140 * 240.00757 * 2 1 3 5 5 O 1.42098 * 110.54347 * 56.61601 * 4 2 1 6 6 O 1.42094 * 110.54253 * 193.37454 * 4 2 1 7 7 C 1.76205 * 104.44493 * 304.99553 * 4 2 1 8 8 C 1.38384 * 119.92805 * 269.72160 * 7 4 2 9 9 C 1.38336 * 120.29087 * 179.76686 * 8 7 4 10 10 C 1.37972 * 120.14795 * 0.51104 * 9 8 7 11 11 C 1.39564 * 119.85158 * 359.74986 * 10 9 8 12 12 C 1.47843 * 120.14538 * 179.97438 * 11 10 9 13 13 O 1.21548 * 119.99761 * 148.07818 * 12 11 10 14 14 N 1.34774 * 119.99706 * 328.08243 * 12 11 10 15 15 C 1.46495 * 120.00333 * 4.30761 * 14 12 11 16 16 C 1.46511 * 119.99744 * 184.30961 * 14 12 11 17 17 H 1.08998 * 109.46618 * 359.97438 * 16 14 12 18 18 C 1.52999 * 109.47057 * 119.99902 * 16 14 12 19 19 C 1.50697 * 109.46840 * 239.99954 * 16 14 12 20 20 H 1.08005 * 120.00628 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99863 * 179.97438 * 19 16 14 22 22 N 1.31507 * 120.00075 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99923 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.47428 * 60.00166 * 23 21 19 25 25 H 1.48495 * 109.46951 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47331 * 300.00018 * 23 21 19 27 27 C 1.37936 * 119.92775 * 90.00213 * 7 4 2 28 28 H 1.08993 * 109.47796 * 59.99534 * 1 2 3 29 29 H 1.09006 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47030 * 299.99101 * 1 2 3 31 31 H 1.08997 * 109.47672 * 119.99964 * 2 1 3 32 32 H 1.09003 * 109.46979 * 60.00833 * 3 2 1 33 33 H 1.09003 * 109.47147 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47641 * 300.00424 * 3 2 1 35 35 H 1.08003 * 119.85155 * 0.02562 * 8 7 4 36 36 H 1.08000 * 119.92358 * 180.26204 * 9 8 7 37 37 H 1.07998 * 120.07815 * 179.72477 * 10 9 8 38 38 H 1.08999 * 109.47385 * 94.53119 * 15 14 12 39 39 H 1.09001 * 109.47031 * 214.52540 * 15 14 12 40 40 H 1.09004 * 109.47311 * 334.52830 * 15 14 12 41 41 H 1.09001 * 109.47195 * 59.99988 * 18 16 14 42 42 H 1.09004 * 109.46799 * 179.97438 * 18 16 14 43 43 H 1.08996 * 109.47051 * 299.99930 * 18 16 14 44 44 H 0.97002 * 120.00516 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.07473 * 359.95423 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8549 -1.4812 5 8 1.6105 -0.2497 -2.6552 6 8 3.5213 -1.1408 -1.3608 7 6 1.3585 -2.4358 -1.4239 8 6 1.9833 -3.4887 -0.7790 9 6 1.3786 -4.7317 -0.7253 10 6 0.1520 -4.9321 -1.3244 11 6 -0.4811 -3.8758 -1.9811 12 6 -1.7953 -4.0834 -2.6258 13 8 -2.5979 -3.1720 -2.6767 14 7 -2.1034 -5.2831 -3.1568 15 6 -1.1759 -6.4079 -3.0128 16 6 -3.3659 -5.4625 -3.8783 17 1 -3.9191 -4.5233 -3.8813 18 6 -3.0741 -5.8878 -5.3187 19 6 -4.1870 -6.5265 -3.1968 20 1 -3.8065 -7.0202 -2.3147 21 6 -5.4242 -6.8699 -3.6993 22 7 -5.8879 -6.2685 -4.7729 23 14 -6.4418 -8.1894 -2.8549 24 1 -6.7244 -7.7775 -1.4565 25 1 -7.7220 -8.3702 -3.5853 26 1 -5.6884 -9.4690 -2.8513 27 6 0.1321 -2.6226 -2.0270 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.9454 -3.3382 -0.3119 36 1 1.8696 -5.5482 -0.2167 37 1 -0.3171 -5.9041 -1.2856 38 1 -1.4584 -7.0029 -2.1443 39 1 -1.2165 -7.0292 -3.9075 40 1 -0.1627 -6.0286 -2.8794 41 1 -2.5210 -6.8271 -5.3153 42 1 -4.0135 -6.0217 -5.8553 43 1 -2.4802 -5.1182 -5.8116 44 1 -6.7584 -6.5098 -5.1263 45 1 -0.3528 -1.8011 -2.5333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548429730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:18 Heat of formation + Delta-G solvation = -86.476184 kcal Electronic energy + Delta-G solvation = -27807.833369 eV Core-core repulsion = 23917.633815 eV Total energy + Delta-G solvation = -3890.199554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52120 -39.46082 -38.26676 -37.30240 -37.07497 -36.00098 -35.03907 -32.98139 -32.31078 -30.85289 -28.33600 -27.97769 -27.33875 -25.27069 -24.42526 -23.35817 -22.75286 -20.91178 -19.75690 -18.88361 -18.46968 -17.90911 -17.73480 -17.26140 -16.94548 -16.74549 -16.38629 -16.25408 -15.69437 -15.35719 -15.08093 -14.70322 -14.51120 -14.34157 -14.26686 -14.19512 -13.88336 -13.61310 -13.48614 -13.25939 -13.24482 -13.13703 -12.99428 -12.85012 -12.76413 -12.73890 -12.46508 -12.41123 -12.36387 -12.21717 -12.15098 -11.81761 -11.27995 -11.21714 -10.86179 -10.54738 -10.34956 -10.15782 -9.43642 -8.16597 -6.33998 -1.00762 -0.39023 -0.06332 1.41245 1.43864 1.51319 1.69712 1.77070 2.16649 2.39516 2.49400 2.86892 3.03047 3.11595 3.44427 3.55227 3.64856 3.76924 3.87663 4.02958 4.16245 4.28306 4.31383 4.45264 4.58401 4.59846 4.65050 4.67825 4.69422 4.74046 4.83278 4.83459 4.90018 4.93635 4.99132 5.09503 5.13872 5.15875 5.17681 5.41241 5.52665 5.61533 5.68649 5.97045 6.10891 6.67291 6.72678 7.19289 7.39408 8.88063 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002793 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.924003 B =10022.980057 C =10325.838328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.536 4.536 3 C -0.157 4.157 4 S 2.490 3.510 5 O -0.976 6.976 6 O -0.958 6.958 7 C -0.668 4.668 8 C -0.005 4.005 9 C -0.130 4.130 10 C -0.048 4.048 11 C -0.160 4.160 12 C 0.533 3.467 13 O -0.598 6.598 14 N -0.590 5.590 15 C 0.063 3.937 16 C 0.261 3.739 17 H 0.009 0.991 18 C -0.135 4.135 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.014 3.986 22 N -0.919 5.919 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.260 1.260 27 C 0.012 3.988 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.177 0.823 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.168 0.832 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.017 0.983 44 H 0.265 0.735 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.194 6.088 14.244 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.649 4.649 3 C -0.216 4.216 4 S 2.674 3.326 5 O -0.973 6.973 6 O -0.956 6.956 7 C -0.754 4.754 8 C -0.024 4.024 9 C -0.148 4.148 10 C -0.066 4.066 11 C -0.164 4.164 12 C 0.322 3.678 13 O -0.481 6.481 14 N -0.319 5.319 15 C -0.078 4.078 16 C 0.160 3.840 17 H 0.027 0.973 18 C -0.193 4.193 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.185 4.185 22 N -0.557 5.557 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.184 1.184 27 C -0.008 4.008 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.195 0.805 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.194 0.806 36 H 0.202 0.798 37 H 0.185 0.815 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.181 6.765 13.385 25.143 hybrid contribution -1.880 -0.823 0.101 2.054 sum 18.301 5.941 13.486 23.497 Atomic orbital electron populations 1.21846 0.89897 1.04112 1.05596 1.29797 1.06853 1.09807 1.18480 1.21890 1.02756 0.90815 1.06114 1.05796 0.74296 0.74515 0.77973 1.93530 1.80815 1.76635 1.46320 1.93518 1.30197 1.84132 1.87708 1.30516 1.07422 1.23259 1.14182 1.21592 0.98637 0.91395 0.90738 1.21743 0.94598 0.98675 0.99777 1.22554 0.94957 0.98550 0.90581 1.20014 0.95170 0.96566 1.04663 1.18949 0.87255 0.82651 0.78934 1.90701 1.52248 1.43773 1.61403 1.48154 1.21162 1.09981 1.52603 1.22518 0.92925 0.88989 1.03416 1.18608 0.80129 0.95878 0.89413 0.97296 1.21909 1.01274 0.98524 0.97630 1.21520 1.02743 1.21059 1.12500 0.91693 1.25777 0.98487 0.98738 0.95539 1.70018 1.19418 1.43116 1.23185 0.85461 0.77719 0.79379 0.78164 1.20162 1.21056 1.18448 1.20827 0.92017 0.96167 0.91783 0.91553 0.91587 0.87662 0.80546 0.87086 0.89734 0.91201 0.80639 0.79807 0.81509 0.90742 0.90906 0.88099 0.93001 0.91070 0.96397 0.92572 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.89 71.98 0.64 -1.75 16 2 C -0.54 -6.61 3.48 30.59 0.11 -6.51 16 3 C -0.16 -1.57 9.20 71.98 0.66 -0.91 16 4 S 2.49 53.06 4.67 -56.49 -0.26 52.79 16 5 O -0.98 -29.38 17.11 -127.65 -2.18 -31.56 16 6 O -0.96 -22.75 17.11 -127.65 -2.18 -24.94 16 7 C -0.67 -15.37 4.87 22.23 0.11 -15.26 16 8 C 0.00 -0.08 9.47 22.33 0.21 0.13 16 9 C -0.13 -2.00 10.03 22.23 0.22 -1.78 16 10 C -0.05 -1.10 7.44 22.53 0.17 -0.93 16 11 C -0.16 -5.23 5.47 -20.09 -0.11 -5.33 16 12 C 0.53 23.52 7.44 86.79 0.65 24.17 16 13 O -0.60 -32.14 16.09 -3.87 -0.06 -32.20 16 14 N -0.59 -25.60 2.75 -830.21 -2.29 -27.89 16 15 C 0.06 1.94 8.08 127.77 1.03 2.97 16 16 C 0.26 13.84 2.63 44.24 0.12 13.96 16 17 H 0.01 0.58 6.91 -2.39 -0.02 0.56 16 18 C -0.13 -6.63 8.94 71.98 0.64 -5.99 16 19 C -0.54 -29.21 8.37 25.60 0.21 -29.00 16 20 H 0.06 3.34 7.52 -2.91 -0.02 3.32 16 21 C 0.01 0.78 5.30 84.66 0.45 1.23 16 22 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 23 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 27 C 0.01 0.37 8.00 22.53 0.18 0.55 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.16 6.58 -2.38 -0.02 1.14 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.18 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.18 1.81 7.55 -2.91 -0.02 1.78 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.17 3.29 4.80 -2.91 -0.01 3.27 16 38 H 0.07 2.04 7.30 -2.39 -0.02 2.03 16 39 H 0.07 2.25 6.44 -2.39 -0.02 2.24 16 40 H 0.10 2.43 4.72 -2.39 -0.01 2.41 16 41 H 0.05 2.28 6.69 -2.39 -0.02 2.26 16 42 H 0.07 3.86 6.07 -2.38 -0.01 3.85 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.13 4.33 7.46 -2.91 -0.02 4.31 16 Total: -1.00 -83.03 372.93 1.59 -81.44 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.00 Total: 15.18 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 5.29 Total: -24.45 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.04 Total: -80.84 kcal Atomic # 8 Polarization: -84.28 SS G_CDS: -4.43 Total: -88.71 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.26 Total: 52.79 kcal Total: -83.03 1.59 -81.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548429730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.032 kcal (2) G-P(sol) polarization free energy of solvation -83.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds