Wall clock time and date at job start Tue Mar 31 2020 22:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50701 * 119.99735 * 2 1 4 4 N 1.46500 * 109.46870 * 125.00482 * 3 2 1 5 5 C 1.46504 * 119.99529 * 275.00019 * 4 3 2 6 6 C 1.50701 * 109.46819 * 274.99455 * 5 4 3 7 7 H 1.08006 * 119.99715 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00257 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99721 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00398 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47070 * 89.99376 * 10 8 6 12 12 H 1.48493 * 109.47297 * 209.99901 * 10 8 6 13 13 H 1.48502 * 109.46729 * 329.99968 * 10 8 6 14 14 S 1.65600 * 120.00458 * 94.99400 * 4 3 2 15 15 O 1.42105 * 106.39765 * 336.46318 * 14 4 3 16 16 O 1.42091 * 106.40513 * 203.54223 * 14 4 3 17 17 C 1.76199 * 107.21717 * 89.99864 * 14 4 3 18 18 C 1.38288 * 119.94218 * 90.00152 * 17 14 4 19 19 C 1.38120 * 120.05613 * 179.97438 * 18 17 14 20 20 C 1.38751 * 119.94502 * 0.02562 * 19 18 17 21 21 O 1.35897 * 120.05772 * 180.02562 * 20 19 18 22 22 C 1.42905 * 117.00093 * 0.02562 * 21 20 19 23 23 C 1.52997 * 109.47264 * 180.02562 * 22 21 20 24 24 C 1.38713 * 119.88715 * 0.27885 * 20 19 18 25 25 C 1.50700 * 120.02698 * 179.72343 * 24 20 19 26 26 C 1.38166 * 119.94083 * 359.40630 * 24 20 19 27 27 H 1.07994 * 120.00255 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99319 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.99503 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47227 * 4.99997 * 3 2 1 31 31 H 1.09001 * 109.46865 * 244.99298 * 3 2 1 32 32 H 1.08999 * 109.47321 * 34.99356 * 5 4 3 33 33 H 1.09005 * 109.46934 * 155.00422 * 5 4 3 34 34 H 0.97002 * 120.00359 * 179.97438 * 9 8 6 35 35 H 1.08001 * 119.97083 * 0.02562 * 18 17 14 36 36 H 1.08004 * 120.02942 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47103 * 300.00408 * 22 21 20 38 38 H 1.09004 * 109.47054 * 59.99912 * 22 21 20 39 39 H 1.09001 * 109.46832 * 299.99892 * 23 22 21 40 40 H 1.08992 * 109.47303 * 59.99596 * 23 22 21 41 41 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47046 * 90.00007 * 25 24 20 43 43 H 1.09001 * 109.46908 * 210.00557 * 25 24 20 44 44 H 1.09000 * 109.47163 * 329.99764 * 25 24 20 45 45 H 1.08004 * 119.97013 * 180.31968 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5992 3.2645 2.5450 7 1 2.9549 3.8413 1.7040 8 6 2.2100 3.9028 3.7035 9 7 1.7765 3.2005 4.7274 10 14 2.2970 5.7652 3.8182 11 1 1.0117 6.3501 3.3586 12 1 2.5464 6.1633 5.2269 13 1 3.4022 6.2629 2.9601 14 16 4.5714 0.8758 0.9173 15 8 4.5923 0.0261 -0.2216 16 8 5.0504 0.4762 2.1940 17 6 5.4769 2.3215 0.4762 18 6 6.0513 3.1036 1.4614 19 6 6.7621 4.2370 1.1182 20 6 6.8992 4.5910 -0.2163 21 8 7.5986 5.7054 -0.5566 22 6 8.1667 6.4661 0.5114 23 6 8.9098 7.6743 -0.0620 24 6 6.3168 3.8082 -1.2024 25 6 6.4585 4.1931 -2.6525 26 6 5.6123 2.6718 -0.8542 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4026 -0.9314 32 1 1.4983 1.4371 2.5982 33 1 3.1614 1.3203 3.2220 34 1 1.5030 3.6494 5.5426 35 1 5.9446 2.8275 2.5001 36 1 7.2101 4.8478 1.8881 37 1 7.3732 6.8095 1.1751 38 1 8.8638 5.8424 1.0710 39 1 9.7034 7.3312 -0.7259 40 1 8.2125 8.2978 -0.6214 41 1 9.3436 8.2543 0.7526 42 1 7.3527 3.7270 -3.0664 43 1 5.5826 3.8540 -3.2056 44 1 6.5426 5.2768 -2.7342 45 1 5.1630 2.0592 -1.6219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555569506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:35 Heat of formation + Delta-G solvation = -71.931351 kcal Electronic energy + Delta-G solvation = -28254.890708 eV Core-core repulsion = 24365.321865 eV Total energy + Delta-G solvation = -3889.568843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26575 -37.57812 -36.69518 -36.31052 -35.20864 -33.21313 -32.95547 -31.88861 -31.78608 -29.89673 -27.50008 -26.74645 -24.91623 -24.26277 -22.49675 -22.04446 -21.38324 -19.67215 -18.27458 -18.14992 -16.91745 -16.78850 -16.36667 -16.28658 -16.17694 -15.52691 -14.57267 -14.46752 -14.38930 -13.96686 -13.91842 -13.68209 -13.08342 -13.01379 -12.98562 -12.85123 -12.67538 -12.46929 -12.19835 -12.09840 -11.86554 -11.82157 -11.70184 -11.45611 -11.28690 -11.18321 -10.95345 -10.88229 -10.78259 -10.75662 -10.53752 -10.39486 -10.04855 -9.80170 -9.04135 -8.77416 -8.51698 -8.32834 -8.04873 -6.12482 -4.18597 0.97979 1.26199 1.46548 2.65789 3.02915 3.21708 3.29247 3.31205 3.52185 3.86665 4.34840 4.40058 4.66501 4.71157 4.80220 4.81572 5.03483 5.09129 5.20969 5.21982 5.33143 5.37028 5.42986 5.50497 5.54664 5.56589 5.67943 5.68291 5.70820 5.78399 5.93015 6.11105 6.14787 6.30690 6.32033 6.37417 6.42451 6.50432 6.80454 6.99290 7.08726 7.32277 7.35659 7.43186 7.62251 7.84920 8.13978 8.86807 9.47340 10.95505 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.005204 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.364877 B = 5378.702802 C = 7260.724863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.157 3.843 4 N -0.978 5.978 5 C 0.244 3.756 6 C -0.539 4.539 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 S 2.692 3.308 15 O -0.978 6.978 16 O -0.959 6.959 17 C -0.696 4.696 18 C 0.039 3.961 19 C -0.228 4.228 20 C 0.174 3.826 21 O -0.312 6.312 22 C 0.049 3.951 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.100 4.100 26 C 0.011 3.989 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 3.819 -11.048 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.031 3.969 4 N -0.816 5.816 5 C 0.122 3.878 6 C -0.579 4.579 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.526 5.526 10 Si 0.716 3.284 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 S 2.782 3.218 15 O -0.969 6.969 16 O -0.950 6.950 17 C -0.782 4.782 18 C 0.019 3.981 19 C -0.247 4.247 20 C 0.128 3.872 21 O -0.225 6.225 22 C -0.026 4.026 23 C -0.207 4.207 24 C -0.148 4.148 25 C -0.157 4.157 26 C -0.008 4.008 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.959 3.126 -10.933 14.476 hybrid contribution 0.018 1.974 0.474 2.030 sum 8.977 5.100 -10.459 14.696 Atomic orbital electron populations 1.23775 0.95795 1.01564 1.01384 1.23449 0.96328 0.99303 0.98965 1.20203 0.93129 0.95567 0.88044 1.57391 1.23742 1.82697 1.17755 1.19263 0.97232 0.94814 0.76450 1.21565 1.44583 0.92002 0.99718 0.91969 1.24910 0.95043 0.98158 0.95555 1.69931 1.43116 1.35488 1.04098 0.86644 0.78540 0.85852 0.77317 1.20574 1.21086 1.19878 1.01830 0.72972 0.73931 0.73074 1.93506 1.87033 1.63660 1.52680 1.93542 1.80044 1.80692 1.40675 1.31036 1.20685 1.25966 1.00554 1.20744 0.87816 0.90119 0.99389 1.21304 1.07407 1.01258 0.94748 1.18993 0.89810 0.85454 0.92959 1.86041 1.65290 1.35357 1.35800 1.22866 0.97351 0.92911 0.89477 1.21764 1.00561 0.96210 1.02183 1.19241 1.03555 0.96677 0.95329 1.20568 1.02040 1.02095 0.91008 1.20577 0.92666 0.93240 0.94352 0.88885 0.88413 0.87448 0.89450 0.90762 0.93918 0.92875 0.92594 0.83584 0.84925 0.91584 0.91723 0.91580 0.91509 0.90329 0.91572 0.91491 0.91307 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.32 29.01 0.42 -2.29 16 2 C -0.16 -2.61 9.84 -36.03 -0.35 -2.97 16 3 C 0.16 2.73 5.78 -5.19 -0.03 2.70 16 4 N -0.98 -20.05 2.75 -116.94 -0.32 -20.37 16 5 C 0.24 5.96 5.43 -5.19 -0.03 5.93 16 6 C -0.54 -13.93 9.38 -34.44 -0.32 -14.25 16 7 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 10 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 S 2.69 54.03 5.65 -107.50 -0.61 53.42 16 15 O -0.98 -19.50 16.25 -57.17 -0.93 -20.43 16 16 O -0.96 -21.97 15.83 -57.17 -0.91 -22.88 16 17 C -0.70 -12.84 5.97 -39.56 -0.24 -13.07 16 18 C 0.04 0.71 9.52 -39.61 -0.38 0.33 16 19 C -0.23 -3.67 9.04 -39.43 -0.36 -4.03 16 20 C 0.17 2.69 6.66 -39.22 -0.26 2.43 16 21 O -0.31 -4.19 9.18 -19.42 -0.18 -4.37 16 22 C 0.05 0.51 5.46 37.16 0.20 0.71 16 23 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 24 C -0.15 -2.22 5.89 -104.47 -0.62 -2.84 16 25 C -0.10 -1.18 9.79 36.01 0.35 -0.83 16 26 C 0.01 0.18 9.17 -39.61 -0.36 -0.19 16 27 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 29 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 31 H 0.07 1.13 7.61 -51.93 -0.40 0.73 16 32 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.15 2.75 7.61 -52.49 -0.40 2.35 16 36 H 0.13 1.81 6.30 -52.48 -0.33 1.48 16 37 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 38 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 45 H 0.14 1.99 7.61 -52.48 -0.40 1.59 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -31.55 391.31 -9.83 -41.38 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.81 Total: 3.53 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.69 Total: -27.47 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.41 Total: -44.65 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.01 Total: -47.68 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 54.03 SS G_CDS: -0.61 Total: 53.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.55 -9.83 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555569506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.554 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds