Wall clock time and date at job start Tue Mar 31 2020 22:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50701 * 119.99735 * 2 1 4 4 N 1.46500 * 109.46870 * 125.00482 * 3 2 1 5 5 C 1.46504 * 119.99529 * 275.00019 * 4 3 2 6 6 C 1.50701 * 109.46819 * 274.99455 * 5 4 3 7 7 H 1.08006 * 119.99715 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00257 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99721 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00398 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47070 * 89.99376 * 10 8 6 12 12 H 1.48493 * 109.47297 * 209.99901 * 10 8 6 13 13 H 1.48502 * 109.46729 * 329.99968 * 10 8 6 14 14 S 1.65600 * 120.00458 * 94.99400 * 4 3 2 15 15 O 1.42105 * 106.39765 * 336.46318 * 14 4 3 16 16 O 1.42091 * 106.40513 * 203.54223 * 14 4 3 17 17 C 1.76199 * 107.21717 * 89.99864 * 14 4 3 18 18 C 1.38288 * 119.94218 * 90.00152 * 17 14 4 19 19 C 1.38120 * 120.05613 * 179.97438 * 18 17 14 20 20 C 1.38751 * 119.94502 * 0.02562 * 19 18 17 21 21 O 1.35897 * 120.05772 * 180.02562 * 20 19 18 22 22 C 1.42905 * 117.00093 * 0.02562 * 21 20 19 23 23 C 1.52997 * 109.47264 * 180.02562 * 22 21 20 24 24 C 1.38713 * 119.88715 * 0.27885 * 20 19 18 25 25 C 1.50700 * 120.02698 * 179.72343 * 24 20 19 26 26 C 1.38166 * 119.94083 * 359.40630 * 24 20 19 27 27 H 1.07994 * 120.00255 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99319 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.99503 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47227 * 4.99997 * 3 2 1 31 31 H 1.09001 * 109.46865 * 244.99298 * 3 2 1 32 32 H 1.08999 * 109.47321 * 34.99356 * 5 4 3 33 33 H 1.09005 * 109.46934 * 155.00422 * 5 4 3 34 34 H 0.97002 * 120.00359 * 179.97438 * 9 8 6 35 35 H 1.08001 * 119.97083 * 0.02562 * 18 17 14 36 36 H 1.08004 * 120.02942 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47103 * 300.00408 * 22 21 20 38 38 H 1.09004 * 109.47054 * 59.99912 * 22 21 20 39 39 H 1.09001 * 109.46832 * 299.99892 * 23 22 21 40 40 H 1.08992 * 109.47303 * 59.99596 * 23 22 21 41 41 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47046 * 90.00007 * 25 24 20 43 43 H 1.09001 * 109.46908 * 210.00557 * 25 24 20 44 44 H 1.09000 * 109.47163 * 329.99764 * 25 24 20 45 45 H 1.08004 * 119.97013 * 180.31968 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5992 3.2645 2.5450 7 1 2.9549 3.8413 1.7040 8 6 2.2100 3.9028 3.7035 9 7 1.7765 3.2005 4.7274 10 14 2.2970 5.7652 3.8182 11 1 1.0117 6.3501 3.3586 12 1 2.5464 6.1633 5.2269 13 1 3.4022 6.2629 2.9601 14 16 4.5714 0.8758 0.9173 15 8 4.5923 0.0261 -0.2216 16 8 5.0504 0.4762 2.1940 17 6 5.4769 2.3215 0.4762 18 6 6.0513 3.1036 1.4614 19 6 6.7621 4.2370 1.1182 20 6 6.8992 4.5910 -0.2163 21 8 7.5986 5.7054 -0.5566 22 6 8.1667 6.4661 0.5114 23 6 8.9098 7.6743 -0.0620 24 6 6.3168 3.8082 -1.2024 25 6 6.4585 4.1931 -2.6525 26 6 5.6123 2.6718 -0.8542 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4026 -0.9314 32 1 1.4983 1.4371 2.5982 33 1 3.1614 1.3203 3.2220 34 1 1.5030 3.6494 5.5426 35 1 5.9446 2.8275 2.5001 36 1 7.2101 4.8478 1.8881 37 1 7.3732 6.8095 1.1751 38 1 8.8638 5.8424 1.0710 39 1 9.7034 7.3312 -0.7259 40 1 8.2125 8.2978 -0.6214 41 1 9.3436 8.2543 0.7526 42 1 7.3527 3.7270 -3.0664 43 1 5.5826 3.8540 -3.2056 44 1 6.5426 5.2768 -2.7342 45 1 5.1630 2.0592 -1.6219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555569506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:34 Heat of formation + Delta-G solvation = -90.711688 kcal Electronic energy + Delta-G solvation = -28255.705084 eV Core-core repulsion = 24365.321865 eV Total energy + Delta-G solvation = -3890.383220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40280 -38.71575 -38.32832 -37.89938 -36.87766 -34.99543 -34.07622 -33.52225 -32.66738 -31.06593 -29.32975 -27.84333 -26.52817 -25.21234 -24.21659 -23.40852 -22.46436 -20.97803 -19.79201 -19.29052 -18.62216 -18.42917 -18.00338 -17.60266 -17.21314 -17.04544 -16.31242 -15.86979 -15.63094 -15.26374 -15.03071 -14.89562 -14.62808 -14.25202 -14.22992 -14.18928 -13.79524 -13.65763 -13.39889 -13.38749 -13.15876 -13.10813 -13.06640 -12.98696 -12.95558 -12.68176 -12.48298 -12.33866 -12.31303 -11.99529 -11.89555 -11.79753 -11.75090 -11.61958 -10.58210 -10.29395 -10.03613 -9.81413 -9.46512 -8.16798 -6.29596 -0.52731 -0.11827 0.19992 1.38818 1.39423 1.41132 1.49957 2.02960 2.09757 2.38832 2.47835 2.84512 3.14903 3.32758 3.63054 3.70266 3.95770 3.98704 4.05165 4.14325 4.18279 4.19300 4.30604 4.40468 4.42840 4.47707 4.75222 4.78688 4.80663 4.83616 4.90288 4.95975 5.00716 5.04574 5.11218 5.15486 5.23555 5.28940 5.31275 5.47146 5.61249 5.71781 5.77684 5.82002 6.02344 6.10999 6.21221 6.82135 7.39922 8.91379 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.005204 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.364877 B = 5378.702802 C = 7260.724863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.149 3.851 4 N -0.982 5.982 5 C 0.261 3.739 6 C -0.539 4.539 7 H 0.066 0.934 8 C 0.016 3.984 9 N -0.925 5.925 10 Si 0.950 3.050 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 S 2.699 3.301 15 O -0.979 6.979 16 O -0.997 6.997 17 C -0.708 4.708 18 C 0.013 3.987 19 C -0.231 4.231 20 C 0.176 3.824 21 O -0.311 6.311 22 C 0.036 3.964 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.099 4.099 26 C 0.006 3.994 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 5.908 -13.196 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.025 3.975 4 N -0.819 5.819 5 C 0.138 3.862 6 C -0.578 4.578 7 H 0.084 0.916 8 C -0.184 4.184 9 N -0.565 5.565 10 Si 0.775 3.225 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.190 1.190 14 S 2.793 3.207 15 O -0.970 6.970 16 O -0.988 6.988 17 C -0.798 4.798 18 C -0.006 4.006 19 C -0.250 4.250 20 C 0.129 3.871 21 O -0.224 6.224 22 C -0.038 4.038 23 C -0.202 4.202 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.014 4.014 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.529 5.189 -13.102 17.012 hybrid contribution -0.105 1.360 1.075 1.736 sum 9.424 6.549 -12.027 16.624 Atomic orbital electron populations 1.24024 0.95215 1.02918 0.98395 1.23406 0.97075 0.98631 1.01715 1.20447 0.93091 0.96311 0.87697 1.57271 1.24653 1.82774 1.17235 1.18774 0.95513 0.94164 0.77776 1.21782 1.43698 0.92591 0.99713 0.91630 1.25701 0.94819 1.02567 0.95267 1.70053 1.44379 1.37336 1.04709 0.85670 0.78868 0.80555 0.77359 1.19857 1.20922 1.18991 1.01308 0.72707 0.74377 0.72303 1.93488 1.87049 1.64300 1.52133 1.93487 1.80647 1.81938 1.42724 1.30651 1.21755 1.25499 1.01852 1.20722 0.89623 0.91609 0.98689 1.21503 1.06921 1.00594 0.96030 1.19146 0.89399 0.85966 0.92629 1.86066 1.64702 1.34552 1.37053 1.23214 0.97657 0.93679 0.89268 1.21788 1.00325 0.95095 1.02963 1.19664 1.02217 0.95801 0.97212 1.20661 1.03597 1.02550 0.88753 1.20843 0.92889 0.94002 0.93634 0.86694 0.87833 0.87770 0.89530 0.88552 0.95612 0.96024 0.92538 0.85401 0.82929 0.91754 0.90702 0.91121 0.91632 0.88241 0.90012 0.89817 0.90842 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 14.32 67.77 0.97 -3.64 16 2 C -0.19 -6.06 9.84 25.64 0.25 -5.81 16 3 C 0.15 5.17 5.78 85.63 0.50 5.66 16 4 N -0.98 -41.26 2.75 -523.90 -1.44 -42.70 16 5 C 0.26 13.27 5.43 85.63 0.47 13.73 16 6 C -0.54 -28.30 9.38 25.60 0.24 -28.06 16 7 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 8 C 0.02 0.87 5.46 84.65 0.46 1.33 16 9 N -0.93 -53.32 13.29 21.45 0.28 -53.03 16 10 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 S 2.70 111.37 5.65 -56.49 -0.32 111.05 16 15 O -0.98 -39.15 16.25 -128.00 -2.08 -41.23 16 16 O -1.00 -48.24 15.83 -128.00 -2.03 -50.27 16 17 C -0.71 -26.26 5.97 22.28 0.13 -26.13 16 18 C 0.01 0.49 9.52 22.25 0.21 0.70 16 19 C -0.23 -7.26 9.04 22.36 0.20 -7.06 16 20 C 0.18 5.09 6.66 22.51 0.15 5.24 16 21 O -0.31 -7.56 9.18 -92.39 -0.85 -8.41 16 22 C 0.04 0.67 5.46 71.98 0.39 1.06 16 23 C -0.14 -1.84 10.28 71.98 0.74 -1.10 16 24 C -0.15 -4.13 5.89 -19.77 -0.12 -4.25 16 25 C -0.10 -2.01 9.79 71.24 0.70 -1.31 16 26 C 0.01 0.17 9.17 22.25 0.20 0.38 16 27 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.10 2.72 7.84 -2.91 -0.02 2.70 16 29 H 0.10 3.39 8.06 -2.91 -0.02 3.36 16 30 H 0.09 2.97 7.76 -2.39 -0.02 2.95 16 31 H 0.10 2.84 7.61 -2.39 -0.02 2.82 16 32 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.02 1.23 6.91 -2.38 -0.02 1.22 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.13 5.13 7.61 -2.91 -0.02 5.11 16 36 H 0.15 3.98 6.30 -2.91 -0.02 3.97 16 37 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 38 H 0.07 1.23 7.66 -2.38 -0.02 1.21 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 44 H 0.07 1.44 7.53 -2.39 -0.02 1.42 16 45 H 0.16 4.21 7.61 -2.91 -0.02 4.19 16 Total: -1.00 -68.65 391.31 2.07 -66.59 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.97 Total: 23.09 kcal Atomic # 6 Polarization: -54.74 SS G_CDS: 5.50 Total: -49.24 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -1.16 Total: -95.74 kcal Atomic # 8 Polarization: -94.95 SS G_CDS: -4.95 Total: -99.91 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 111.37 SS G_CDS: -0.32 Total: 111.05 kcal Total: -68.65 2.07 -66.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555569506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.127 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds