Wall clock time and date at job start Tue Mar 31 2020 23:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00121 * 2 1 4 4 H 1.09000 * 110.01507 * 178.60811 * 3 2 1 5 5 C 1.54269 * 110.03116 * 57.16878 * 3 2 1 6 6 C 1.54884 * 104.19476 * 217.10386 * 5 3 2 7 7 C 1.54885 * 102.75004 * 37.94292 * 6 5 3 8 8 C 1.53876 * 110.03316 * 300.00073 * 3 2 1 9 9 H 1.08994 * 110.03375 * 0.02562 * 8 3 2 10 10 O 1.42891 * 110.03359 * 238.61404 * 8 3 2 11 11 S 1.65595 * 119.99821 * 180.02562 * 2 1 3 12 12 O 1.42106 * 104.27852 * 153.92932 * 11 2 1 13 13 O 1.42093 * 104.28197 * 26.06871 * 11 2 1 14 14 C 1.81403 * 104.44884 * 269.99641 * 11 2 1 15 15 C 1.50697 * 109.47502 * 180.02562 * 14 11 2 16 16 C 1.38633 * 119.75344 * 89.99958 * 15 14 11 17 17 C 1.37610 * 120.25032 * 180.02562 * 16 15 14 18 18 C 1.40717 * 119.74860 * 359.97438 * 17 16 15 19 19 C 1.41389 * 120.24742 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00164 * 335.23893 * 19 18 17 21 21 C 1.39949 * 120.00304 * 154.95983 * 19 18 17 22 22 N 1.30822 * 119.99606 * 343.05937 * 21 19 18 23 23 Si 1.86794 * 120.00327 * 163.05742 * 21 19 18 24 24 H 1.48499 * 109.47118 * 60.00090 * 23 21 19 25 25 H 1.48499 * 109.47101 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47082 * 300.00247 * 23 21 19 27 27 C 1.40715 * 119.50694 * 0.25581 * 18 17 16 28 28 C 1.37621 * 119.74689 * 359.49003 * 27 18 17 29 29 H 1.09000 * 109.47237 * 270.00147 * 1 2 3 30 30 H 1.09000 * 109.47393 * 29.99572 * 1 2 3 31 31 H 1.09003 * 109.47654 * 149.99536 * 1 2 3 32 32 H 1.09000 * 110.48273 * 335.78419 * 5 3 2 33 33 H 1.09001 * 110.48364 * 98.42522 * 5 3 2 34 34 H 1.08998 * 110.75920 * 279.62411 * 6 5 3 35 35 H 1.09001 * 110.91294 * 156.32913 * 6 5 3 36 36 H 1.09004 * 110.48993 * 203.37719 * 7 6 5 37 37 H 1.09003 * 110.59646 * 80.79249 * 7 6 5 38 38 H 0.96700 * 114.00117 * 179.97438 * 10 8 3 39 39 H 1.09002 * 109.47065 * 60.00069 * 14 11 2 40 40 H 1.09005 * 109.47176 * 299.99895 * 14 11 2 41 41 H 1.08000 * 119.87047 * 0.04508 * 16 15 14 42 42 H 1.08005 * 120.12609 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99979 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.12517 * 179.74672 * 27 18 17 45 45 H 1.08000 * 119.87479 * 180.23070 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2707 1.0799 0.0249 5 6 1.7812 2.1193 1.2179 6 6 1.7747 3.5724 0.6819 7 6 1.2112 3.4057 -0.7511 8 6 1.8351 2.0867 -1.2520 9 1 1.1139 1.5399 -1.8593 10 8 3.0114 2.3596 -2.0158 11 16 2.2929 -1.4341 -0.0006 12 8 3.5395 -1.1189 -0.6057 13 8 1.3969 -2.3559 -0.6062 14 6 2.5193 -1.8268 1.7558 15 6 3.2704 -3.1267 1.8873 16 6 4.6554 -3.1179 1.9476 17 6 5.3516 -4.2988 2.0671 18 6 4.6524 -5.5184 2.1286 19 6 5.3571 -6.7381 2.2509 20 1 6.3785 -6.8084 1.9071 21 6 4.7330 -7.8526 2.8226 22 7 3.6466 -7.7000 3.5352 23 14 5.4512 -9.5581 2.5682 24 1 6.8315 -9.6005 3.1143 25 1 4.6094 -10.5595 3.2709 26 1 5.4833 -9.8702 1.1167 27 6 3.2468 -5.5156 2.0616 28 6 2.5710 -4.3222 1.9474 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 0.7863 1.8343 1.5599 33 1 2.5076 2.0130 2.0236 34 1 2.7858 3.9786 0.6546 35 1 1.1218 4.2057 1.2825 36 1 1.5216 4.2383 -1.3824 37 1 0.1241 3.3294 -0.7292 38 1 2.8485 2.8726 -2.8191 39 1 1.5451 -1.9196 2.2359 40 1 3.0867 -1.0296 2.2362 41 1 5.1899 -2.1806 1.9010 42 1 6.4306 -4.2897 2.1135 43 1 3.2138 -8.4725 3.9312 44 1 2.7003 -6.4462 2.1037 45 1 1.4921 -4.3174 1.8995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563058115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:05 Heat of formation + Delta-G solvation = -109.944166 kcal Electronic energy + Delta-G solvation = -27686.929994 eV Core-core repulsion = 23795.712791 eV Total energy + Delta-G solvation = -3891.217203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.48506 -37.76756 -36.66070 -35.89879 -35.41182 -34.16055 -34.03174 -31.48750 -29.42711 -28.62202 -27.89824 -27.75056 -25.60611 -24.17156 -21.21297 -21.14745 -20.55733 -20.11984 -18.66708 -17.81977 -17.42512 -16.87703 -16.49071 -16.04770 -15.60954 -15.40854 -15.09269 -14.48616 -14.29112 -13.89900 -13.84954 -13.64251 -13.14312 -12.89821 -12.70379 -12.67629 -12.48710 -12.18460 -12.10329 -12.05798 -11.74761 -11.57585 -11.54457 -11.50032 -11.34667 -11.22098 -11.14266 -10.91353 -10.83412 -10.76902 -10.75096 -10.23561 -10.08826 -9.81297 -9.51257 -9.26228 -9.01217 -7.60083 -7.42548 -6.90584 -4.48569 0.59445 2.65328 2.92715 2.97106 3.01176 3.03377 3.13132 3.83700 3.95338 4.21034 4.32158 4.33692 4.50101 4.55579 4.70272 4.86665 5.03355 5.14970 5.23213 5.26171 5.30565 5.35026 5.42768 5.46445 5.54712 5.55873 5.58737 5.71077 5.74176 5.81256 5.97514 6.08154 6.17819 6.21809 6.27377 6.61543 6.84658 6.93133 7.11207 7.19840 7.47415 7.50796 7.67986 7.91150 7.91978 8.14228 8.49113 8.73635 8.81582 10.02842 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.002557 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.058092 B =10949.841332 C =11068.212074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.004 6.004 3 C 0.149 3.851 4 H 0.116 0.884 5 C -0.136 4.136 6 C -0.120 4.120 7 C -0.155 4.155 8 C 0.090 3.910 9 H 0.064 0.936 10 O -0.557 6.557 11 S 2.572 3.428 12 O -0.955 6.955 13 O -0.961 6.961 14 C -0.519 4.519 15 C -0.237 4.237 16 C -0.068 4.068 17 C -0.225 4.225 18 C 0.118 3.882 19 C -0.449 4.449 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.783 5.783 23 Si 0.913 3.087 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.165 4.165 28 C -0.081 4.081 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.375 0.625 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.123 0.877 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 18.243 -3.673 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.839 5.839 3 C 0.042 3.958 4 H 0.133 0.867 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.193 4.193 8 C 0.029 3.971 9 H 0.082 0.918 10 O -0.362 6.362 11 S 2.673 3.327 12 O -0.945 6.945 13 O -0.951 6.951 14 C -0.650 4.650 15 C -0.242 4.242 16 C -0.088 4.088 17 C -0.245 4.245 18 C 0.114 3.886 19 C -0.478 4.478 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.407 5.407 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.186 1.186 27 C -0.185 4.185 28 C -0.101 4.101 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.222 0.778 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.140 0.860 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.566 17.376 -3.879 19.345 hybrid contribution -0.269 -0.190 0.256 0.417 sum -7.835 17.186 -3.623 19.232 Atomic orbital electron populations 1.21521 0.79314 1.03875 1.01774 1.57902 1.14755 1.21121 1.90151 1.21374 0.98111 0.83297 0.92983 0.86654 1.22789 1.02788 0.94636 0.97328 1.22414 1.01584 0.96376 0.95393 1.23086 1.00530 0.97824 0.97901 1.22795 0.87011 0.94462 0.92836 0.91802 1.86606 1.32707 1.77148 1.39709 1.06881 0.73839 0.72460 0.79489 1.93545 1.43777 1.82506 1.74663 1.93507 1.64837 1.61891 1.74878 1.28960 1.08394 1.05460 1.22155 1.18123 0.93110 0.90314 1.22639 1.20476 0.92735 0.97167 0.98393 1.20993 0.98112 0.92174 1.13179 1.17733 0.92172 0.92149 0.86500 1.19710 1.00117 0.94129 1.33869 0.89921 1.26010 0.94321 1.01737 0.92518 1.69806 1.16300 1.33213 1.21427 0.86276 0.79852 0.80205 0.79947 1.18816 1.20180 1.18567 1.21319 0.94684 0.96577 1.05915 1.20606 0.97572 0.92574 0.99317 0.92798 0.91284 0.89670 0.90280 0.90519 0.90880 0.91258 0.90941 0.90865 0.77776 0.86158 0.86256 0.88652 0.88290 0.90438 0.85962 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 9.24 59.84 0.55 1.37 16 2 N -1.00 -13.11 2.99 -113.41 -0.34 -13.45 16 3 C 0.15 1.79 3.04 -66.81 -0.20 1.59 16 4 H 0.12 1.64 6.76 -51.93 -0.35 1.29 16 5 C -0.14 -1.21 6.42 -25.07 -0.16 -1.37 16 6 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 7 C -0.16 -1.14 6.56 -25.07 -0.16 -1.31 16 8 C 0.09 0.94 3.44 -25.61 -0.09 0.85 16 9 H 0.06 0.67 7.01 -51.93 -0.36 0.31 16 10 O -0.56 -6.43 13.22 -35.23 -0.47 -6.89 16 11 S 2.57 45.67 5.40 -107.50 -0.58 45.09 16 12 O -0.95 -20.03 16.60 -57.54 -0.96 -20.99 16 13 O -0.96 -19.73 16.57 -57.54 -0.95 -20.68 16 14 C -0.52 -8.77 6.29 36.00 0.23 -8.54 16 15 C -0.24 -5.23 5.16 -104.33 -0.54 -5.77 16 16 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 17 C -0.22 -5.55 9.80 -38.88 -0.38 -5.93 16 18 C 0.12 3.13 5.57 -106.83 -0.59 2.54 16 19 C -0.45 -11.68 9.05 -37.74 -0.34 -12.02 16 20 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 21 C 0.07 1.80 5.15 -17.34 -0.09 1.71 16 22 N -0.78 -19.66 10.96 55.55 0.61 -19.05 16 23 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.17 -4.31 8.69 -38.87 -0.34 -4.65 16 28 C -0.08 -1.92 9.67 -39.66 -0.38 -2.31 16 29 H 0.05 0.43 7.87 -51.93 -0.41 0.03 16 30 H 0.07 0.54 6.92 -51.93 -0.36 0.18 16 31 H 0.08 0.97 6.91 -51.93 -0.36 0.61 16 32 H 0.08 0.62 6.84 -51.93 -0.36 0.27 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.45 8.07 -51.93 -0.42 0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.38 2.51 9.11 45.56 0.41 2.93 16 39 H 0.12 1.73 8.08 -51.92 -0.42 1.31 16 40 H 0.12 1.71 8.08 -51.92 -0.42 1.29 16 41 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 42 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 43 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 44 H 0.12 3.24 6.19 -52.48 -0.32 2.91 16 45 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -33.27 376.10 -10.98 -44.25 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.87 Total: 9.76 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: -3.06 Total: -36.85 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.27 Total: -32.50 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -2.37 Total: -48.56 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -0.58 Total: 45.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.27 -10.98 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563058115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.696 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds