Wall clock time and date at job start Tue Mar 31 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00121 * 2 1 4 4 H 1.09000 * 110.01507 * 178.60811 * 3 2 1 5 5 C 1.54269 * 110.03116 * 57.16878 * 3 2 1 6 6 C 1.54884 * 104.19476 * 217.10386 * 5 3 2 7 7 C 1.54885 * 102.75004 * 37.94292 * 6 5 3 8 8 C 1.53876 * 110.03316 * 300.00073 * 3 2 1 9 9 H 1.08994 * 110.03375 * 0.02562 * 8 3 2 10 10 O 1.42891 * 110.03359 * 238.61404 * 8 3 2 11 11 S 1.65595 * 119.99821 * 180.02562 * 2 1 3 12 12 O 1.42106 * 104.27852 * 153.92932 * 11 2 1 13 13 O 1.42093 * 104.28197 * 26.06871 * 11 2 1 14 14 C 1.81403 * 104.44884 * 269.99641 * 11 2 1 15 15 C 1.50697 * 109.47502 * 180.02562 * 14 11 2 16 16 C 1.38633 * 119.75344 * 89.99958 * 15 14 11 17 17 C 1.37610 * 120.25032 * 180.02562 * 16 15 14 18 18 C 1.40717 * 119.74860 * 359.97438 * 17 16 15 19 19 C 1.41389 * 120.24742 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00164 * 335.23893 * 19 18 17 21 21 C 1.39949 * 120.00304 * 154.95983 * 19 18 17 22 22 N 1.30822 * 119.99606 * 343.05937 * 21 19 18 23 23 Si 1.86794 * 120.00327 * 163.05742 * 21 19 18 24 24 H 1.48499 * 109.47118 * 60.00090 * 23 21 19 25 25 H 1.48499 * 109.47101 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47082 * 300.00247 * 23 21 19 27 27 C 1.40715 * 119.50694 * 0.25581 * 18 17 16 28 28 C 1.37621 * 119.74689 * 359.49003 * 27 18 17 29 29 H 1.09000 * 109.47237 * 270.00147 * 1 2 3 30 30 H 1.09000 * 109.47393 * 29.99572 * 1 2 3 31 31 H 1.09003 * 109.47654 * 149.99536 * 1 2 3 32 32 H 1.09000 * 110.48273 * 335.78419 * 5 3 2 33 33 H 1.09001 * 110.48364 * 98.42522 * 5 3 2 34 34 H 1.08998 * 110.75920 * 279.62411 * 6 5 3 35 35 H 1.09001 * 110.91294 * 156.32913 * 6 5 3 36 36 H 1.09004 * 110.48993 * 203.37719 * 7 6 5 37 37 H 1.09003 * 110.59646 * 80.79249 * 7 6 5 38 38 H 0.96700 * 114.00117 * 179.97438 * 10 8 3 39 39 H 1.09002 * 109.47065 * 60.00069 * 14 11 2 40 40 H 1.09005 * 109.47176 * 299.99895 * 14 11 2 41 41 H 1.08000 * 119.87047 * 0.04508 * 16 15 14 42 42 H 1.08005 * 120.12609 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99979 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.12517 * 179.74672 * 27 18 17 45 45 H 1.08000 * 119.87479 * 180.23070 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2707 1.0799 0.0249 5 6 1.7812 2.1193 1.2179 6 6 1.7747 3.5724 0.6819 7 6 1.2112 3.4057 -0.7511 8 6 1.8351 2.0867 -1.2520 9 1 1.1139 1.5399 -1.8593 10 8 3.0114 2.3596 -2.0158 11 16 2.2929 -1.4341 -0.0006 12 8 3.5395 -1.1189 -0.6057 13 8 1.3969 -2.3559 -0.6062 14 6 2.5193 -1.8268 1.7558 15 6 3.2704 -3.1267 1.8873 16 6 4.6554 -3.1179 1.9476 17 6 5.3516 -4.2988 2.0671 18 6 4.6524 -5.5184 2.1286 19 6 5.3571 -6.7381 2.2509 20 1 6.3785 -6.8084 1.9071 21 6 4.7330 -7.8526 2.8226 22 7 3.6466 -7.7000 3.5352 23 14 5.4512 -9.5581 2.5682 24 1 6.8315 -9.6005 3.1143 25 1 4.6094 -10.5595 3.2709 26 1 5.4833 -9.8702 1.1167 27 6 3.2468 -5.5156 2.0616 28 6 2.5710 -4.3222 1.9474 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 0.7863 1.8343 1.5599 33 1 2.5076 2.0130 2.0236 34 1 2.7858 3.9786 0.6546 35 1 1.1218 4.2057 1.2825 36 1 1.5216 4.2383 -1.3824 37 1 0.1241 3.3294 -0.7292 38 1 2.8485 2.8726 -2.8191 39 1 1.5451 -1.9196 2.2359 40 1 3.0867 -1.0296 2.2362 41 1 5.1899 -2.1806 1.9010 42 1 6.4306 -4.2897 2.1135 43 1 3.2138 -8.4725 3.9312 44 1 2.7003 -6.4462 2.1037 45 1 1.4921 -4.3174 1.8995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563058115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:04 Heat of formation + Delta-G solvation = -133.828749 kcal Electronic energy + Delta-G solvation = -27687.965707 eV Core-core repulsion = 23795.712791 eV Total energy + Delta-G solvation = -3892.252916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.26326 -39.61030 -38.18836 -37.00997 -36.72381 -35.96620 -34.82945 -33.23363 -31.30987 -29.57441 -29.35083 -28.52840 -26.56369 -25.88376 -23.04201 -22.17522 -21.82862 -21.23442 -19.78777 -19.31650 -19.03615 -17.89238 -17.56084 -17.37565 -17.13270 -16.43180 -16.29404 -16.03936 -15.70290 -15.57874 -15.14809 -14.56735 -14.39740 -13.94107 -13.89853 -13.77956 -13.68623 -13.56589 -13.50381 -13.37833 -13.25797 -13.14571 -13.06875 -12.79114 -12.60748 -12.56760 -12.35087 -12.30596 -11.98207 -11.84805 -11.64580 -11.58556 -11.47490 -11.36849 -11.04938 -10.82789 -10.02783 -9.50069 -9.28036 -8.72510 -6.42814 -0.80544 0.86070 1.03827 1.36919 1.48152 1.51776 1.71988 2.17288 2.61916 2.89739 3.10690 3.29434 3.53452 3.62521 3.63209 3.81877 3.99162 4.04443 4.09876 4.35641 4.40895 4.44370 4.47350 4.51910 4.62062 4.66639 4.72133 4.78420 4.85575 4.95476 4.96553 5.03757 5.06709 5.17319 5.19401 5.22559 5.30099 5.31978 5.47195 5.58639 5.67155 5.80736 5.99807 6.01320 6.25672 6.58025 6.82818 6.90350 6.91541 8.24033 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.002557 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.058092 B =10949.841332 C =11068.212074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.994 5.994 3 C 0.137 3.863 4 H 0.087 0.913 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.145 4.145 8 C 0.083 3.917 9 H 0.061 0.939 10 O -0.584 6.584 11 S 2.589 3.411 12 O -0.994 6.994 13 O -0.994 6.994 14 C -0.520 4.520 15 C -0.234 4.234 16 C -0.078 4.078 17 C -0.245 4.245 18 C 0.085 3.915 19 C -0.490 4.490 20 H 0.081 0.919 21 C 0.034 3.966 22 N -0.815 5.815 23 Si 0.986 3.014 24 H -0.257 1.257 25 H -0.264 1.264 26 H -0.262 1.262 27 C -0.193 4.193 28 C -0.091 4.091 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.393 0.607 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.292 0.708 44 H 0.108 0.892 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 20.671 -3.261 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.832 5.832 3 C 0.030 3.970 4 H 0.105 0.895 5 C -0.172 4.172 6 C -0.156 4.156 7 C -0.183 4.183 8 C 0.022 3.978 9 H 0.079 0.921 10 O -0.393 6.393 11 S 2.690 3.310 12 O -0.984 6.984 13 O -0.984 6.984 14 C -0.651 4.651 15 C -0.238 4.238 16 C -0.097 4.097 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.519 4.519 20 H 0.099 0.901 21 C -0.182 4.182 22 N -0.440 5.440 23 Si 0.806 3.194 24 H -0.181 1.181 25 H -0.188 1.188 26 H -0.186 1.186 27 C -0.212 4.212 28 C -0.111 4.111 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.218 19.795 -3.464 22.109 hybrid contribution 0.144 -0.666 0.060 0.685 sum -9.074 19.128 -3.404 21.443 Atomic orbital electron populations 1.21841 0.77033 1.04582 1.03987 1.57431 1.15928 1.19801 1.90017 1.21640 0.96576 0.83062 0.95674 0.89533 1.22820 1.03728 0.94767 0.95874 1.22431 1.01771 0.95665 0.95691 1.23040 1.01346 0.96176 0.97743 1.22897 0.86675 0.96063 0.92141 0.92087 1.86557 1.33838 1.77838 1.41024 1.05758 0.72993 0.73014 0.79185 1.93503 1.45912 1.83341 1.75625 1.93470 1.65418 1.63818 1.75703 1.29014 1.10014 1.03609 1.22496 1.18547 0.93267 0.92082 1.19897 1.20862 0.93550 0.97629 0.97705 1.21234 0.98754 0.92574 1.13894 1.18088 0.92825 0.93246 0.87608 1.19945 1.00593 0.95367 1.36012 0.90054 1.26857 0.94577 1.05275 0.91520 1.69847 1.17472 1.34653 1.22031 0.85187 0.79357 0.75119 0.79701 1.18060 1.18812 1.18613 1.21336 0.94847 0.97095 1.07937 1.20928 0.98791 0.92550 0.98784 0.89844 0.88483 0.91150 0.88497 0.90242 0.91672 0.89087 0.89753 0.88956 0.75680 0.82925 0.83111 0.85978 0.87632 0.89670 0.87417 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.24 127.77 1.18 2.36 16 2 N -0.99 -23.64 2.99 -512.72 -1.53 -25.18 16 3 C 0.14 2.99 3.04 45.72 0.14 3.13 16 4 H 0.09 2.41 6.76 -2.39 -0.02 2.39 16 5 C -0.13 -1.88 6.42 31.67 0.20 -1.68 16 6 C -0.12 -1.32 6.91 31.88 0.22 -1.10 16 7 C -0.15 -1.59 6.56 31.67 0.21 -1.38 16 8 C 0.08 1.55 3.44 31.32 0.11 1.66 16 9 H 0.06 1.15 7.01 -2.39 -0.02 1.13 16 10 O -0.58 -12.86 13.22 -148.98 -1.97 -14.83 16 11 S 2.59 89.16 5.40 -56.49 -0.30 88.86 16 12 O -0.99 -41.78 16.60 -127.65 -2.12 -43.90 16 13 O -0.99 -40.39 16.57 -127.65 -2.12 -42.50 16 14 C -0.52 -16.33 6.29 71.24 0.45 -15.88 16 15 C -0.23 -10.19 5.16 -19.68 -0.10 -10.29 16 16 C -0.08 -3.58 9.67 22.22 0.21 -3.37 16 17 C -0.24 -12.51 9.80 22.73 0.22 -12.29 16 18 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 19 C -0.49 -26.76 9.05 23.46 0.21 -26.55 16 20 H 0.08 4.25 7.90 -2.91 -0.02 4.23 16 21 C 0.03 1.72 5.15 85.26 0.44 2.16 16 22 N -0.82 -42.33 10.96 21.83 0.24 -42.09 16 23 Si 0.99 38.03 29.59 68.60 2.03 40.06 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 27 C -0.19 -10.46 8.69 22.73 0.20 -10.26 16 28 C -0.09 -4.37 9.67 22.22 0.21 -4.15 16 29 H 0.08 0.95 7.87 -2.39 -0.02 0.94 16 30 H 0.10 1.13 6.92 -2.39 -0.02 1.11 16 31 H 0.07 1.45 6.91 -2.39 -0.02 1.43 16 32 H 0.10 1.04 6.84 -2.39 -0.02 1.02 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.75 8.07 -2.39 -0.02 0.73 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.39 4.77 9.11 -74.06 -0.67 4.09 16 39 H 0.15 3.83 8.08 -2.39 -0.02 3.81 16 40 H 0.15 3.81 8.08 -2.39 -0.02 3.79 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 44 H 0.11 6.03 6.19 -2.91 -0.02 6.01 16 45 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -76.44 376.10 -1.66 -78.10 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.33 Total: 34.51 kcal Atomic # 6 Polarization: -76.80 SS G_CDS: 3.79 Total: -73.01 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.29 Total: -67.27 kcal Atomic # 8 Polarization: -95.03 SS G_CDS: -6.20 Total: -101.24 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 16 Polarization: 89.16 SS G_CDS: -0.30 Total: 88.86 kcal Total: -76.44 -1.66 -78.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563058115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.729 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds