Wall clock time and date at job start Tue Mar 31 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47366 * 2 1 4 4 C 1.35898 * 117.00181 * 179.97438 * 3 2 1 5 5 C 1.38759 * 120.05347 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94428 * 180.02562 * 5 4 3 7 7 C 1.38286 * 120.05411 * 0.27019 * 6 5 4 8 8 S 1.76202 * 119.94633 * 179.70146 * 7 6 5 9 9 O 1.42095 * 106.40753 * 203.54633 * 8 7 6 10 10 O 1.42106 * 106.39659 * 336.46776 * 8 7 6 11 11 N 1.65602 * 107.21682 * 90.00164 * 8 7 6 12 12 C 1.46502 * 119.99573 * 64.60012 * 11 8 7 13 13 C 1.53003 * 109.46904 * 159.82179 * 12 11 8 14 14 C 1.50702 * 115.54556 * 65.63953 * 13 12 11 15 15 H 1.08000 * 119.99762 * 264.62971 * 14 13 12 16 16 C 1.37876 * 120.00088 * 84.63960 * 14 13 12 17 17 N 1.31518 * 120.00101 * 184.32431 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 4.31892 * 16 14 13 19 19 H 1.48501 * 109.46871 * 94.16273 * 18 16 14 20 20 H 1.48501 * 109.47299 * 214.15963 * 18 16 14 21 21 H 1.48497 * 109.47193 * 334.15952 * 18 16 14 22 22 C 1.52991 * 117.50225 * 279.97129 * 13 12 11 23 23 C 1.52995 * 117.49868 * 211.30836 * 13 12 11 24 24 C 1.38248 * 120.11381 * 359.45432 * 7 6 5 25 25 C 1.38173 * 120.05005 * 0.54849 * 24 7 6 26 26 C 1.50707 * 120.02396 * 179.70558 * 25 24 7 27 27 H 1.08998 * 109.46805 * 300.00361 * 1 2 3 28 28 H 1.09001 * 109.47025 * 59.99809 * 1 2 3 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46805 * 239.99639 * 2 1 3 31 31 H 1.09001 * 109.47025 * 120.00191 * 2 1 3 32 32 H 1.08002 * 120.02717 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.97052 * 180.02562 * 6 5 4 34 34 H 0.96995 * 120.00302 * 244.59796 * 11 8 7 35 35 H 1.09002 * 109.47018 * 279.81926 * 12 11 8 36 36 H 1.09003 * 109.47007 * 39.82449 * 12 11 8 37 37 H 0.96997 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.09001 * 117.49697 * 359.97438 * 22 13 12 39 39 H 1.09002 * 117.50456 * 145.01587 * 22 13 12 40 40 H 1.09000 * 117.49880 * 214.98299 * 23 13 12 41 41 H 1.09000 * 117.50270 * 359.97438 * 23 13 12 42 42 H 1.08000 * 119.97584 * 180.29459 * 24 7 6 43 43 H 1.08997 * 109.46718 * 270.01785 * 26 25 24 44 44 H 1.09003 * 109.46889 * 30.01788 * 26 25 24 45 45 H 1.08997 * 109.47145 * 150.01756 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.2000 0.4256 0.0005 6 6 5.5690 0.6092 0.0016 7 6 6.0963 1.8875 0.0084 8 16 7.8431 2.1184 0.0177 9 8 8.0746 3.4080 0.5676 10 8 8.4019 0.9301 0.5609 11 7 8.3368 2.1878 -1.5615 12 6 7.8904 3.2872 -2.4208 13 6 8.8363 3.4163 -3.6165 14 6 8.8364 2.2522 -4.5736 15 1 9.5748 1.4705 -4.4729 16 6 7.8941 2.1854 -5.5779 17 7 7.8402 1.1292 -6.3598 18 14 6.6939 3.5948 -5.8278 19 1 7.2300 4.5254 -6.8534 20 1 5.3865 3.0569 -6.2826 21 1 6.5110 4.3223 -4.5463 22 6 10.1615 4.1474 -3.3932 23 6 9.0465 4.8135 -4.2033 24 6 5.2553 2.9848 0.0026 25 6 3.8852 2.8064 0.0016 26 6 2.9690 4.0030 0.0021 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.7885 -0.5730 0.0005 33 1 6.2280 -0.2464 0.0012 34 1 8.9215 1.5006 -1.9175 35 1 6.8805 3.0831 -2.7768 36 1 7.8943 4.2172 -1.8523 37 1 7.1771 1.0821 -7.0661 38 1 10.3593 4.5369 -2.3946 39 1 11.0335 3.7868 -3.9389 40 1 9.1853 4.8908 -5.2816 41 1 8.5106 5.6407 -3.7379 42 1 5.6696 3.9822 0.0031 43 1 2.7477 4.2907 1.0299 44 1 3.4549 4.8329 -0.5110 45 1 2.0417 3.7508 -0.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575239423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:27 Heat of formation + Delta-G solvation = -68.858214 kcal Electronic energy + Delta-G solvation = -27874.431581 eV Core-core repulsion = 23984.995999 eV Total energy + Delta-G solvation = -3889.435582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51139 -37.83464 -37.45004 -36.86206 -35.54369 -33.44180 -33.19329 -32.14479 -31.96375 -30.15804 -26.99311 -26.34406 -24.90989 -24.46116 -22.56426 -21.67664 -21.62062 -19.34911 -18.91912 -18.40819 -17.35082 -16.95561 -16.59755 -16.47009 -16.29669 -15.37851 -15.00528 -14.73153 -14.37969 -14.11100 -14.04559 -13.58888 -13.32803 -13.30684 -12.99009 -12.94177 -12.82375 -12.65061 -12.57252 -12.27667 -12.11867 -12.00270 -11.81315 -11.72366 -11.67048 -11.14290 -11.13933 -11.04342 -10.92453 -10.69441 -10.50093 -10.16002 -9.58113 -9.28943 -9.06174 -8.90114 -8.57614 -8.55651 -8.49568 -6.17571 -4.21350 0.67620 0.94154 1.16997 2.82711 3.20787 3.24660 3.34632 3.37859 3.54694 4.07341 4.36647 4.41057 4.54751 4.55993 4.60300 4.81400 4.87453 4.91130 5.02693 5.11393 5.11882 5.23833 5.35823 5.41506 5.45231 5.56480 5.57897 5.66035 5.70774 5.88588 5.95664 6.02511 6.03039 6.08089 6.08955 6.16176 6.21336 6.47022 6.54348 6.66237 6.71727 7.08568 7.08905 7.09907 7.64217 7.67215 8.42179 8.85003 9.45785 10.93718 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.004276 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.920118 B = 6546.313159 C = 7799.835940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.309 6.309 4 C 0.179 3.821 5 C -0.227 4.227 6 C 0.021 3.979 7 C -0.705 4.705 8 S 2.696 3.304 9 O -0.966 6.966 10 O -0.969 6.969 11 N -1.094 6.094 12 C 0.154 3.846 13 C -0.007 4.007 14 C -0.489 4.489 15 H 0.079 0.921 16 C 0.080 3.920 17 N -0.894 5.894 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.254 1.254 22 C -0.177 4.177 23 C -0.196 4.196 24 C 0.015 3.985 25 C -0.140 4.140 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.426 0.574 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 0.522 12.982 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.222 6.222 4 C 0.132 3.868 5 C -0.247 4.247 6 C 0.001 3.999 7 C -0.791 4.791 8 S 2.785 3.215 9 O -0.956 6.956 10 O -0.960 6.960 11 N -0.856 5.856 12 C 0.027 3.973 13 C -0.009 4.009 14 C -0.526 4.526 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.178 1.178 22 C -0.214 4.214 23 C -0.234 4.234 24 C -0.004 4.004 25 C -0.142 4.142 26 C -0.161 4.161 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.163 0.837 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.295 0.769 13.633 18.374 hybrid contribution -1.147 -0.062 -0.930 1.478 sum -13.442 0.707 12.703 18.508 Atomic orbital electron populations 1.21776 0.92476 1.03005 1.03586 1.22895 0.96087 0.81689 1.01900 1.86077 1.18837 1.29753 1.87528 1.19030 0.82252 0.93822 0.91682 1.21311 0.94324 0.98241 1.10787 1.20691 0.94946 0.95610 0.88612 1.30963 1.27311 0.99629 1.21209 1.01683 0.73430 0.73497 0.72923 1.93551 1.84243 1.40941 1.76896 1.93554 1.76831 1.48417 1.77168 1.55119 1.63302 1.37340 1.29829 1.21063 0.98184 0.86647 0.91377 1.19498 0.94144 0.92157 0.95145 1.20227 1.15983 1.05306 1.11062 0.90256 1.24970 0.96632 0.95411 0.95298 1.69900 1.35492 1.28203 1.19528 0.86908 0.80319 0.83004 0.79504 1.20480 1.22157 1.17827 1.22850 0.93666 1.05498 0.99401 1.23006 1.04297 0.96756 0.99349 1.20682 0.91683 0.98177 0.89856 1.19337 0.94255 0.92857 1.07713 1.20620 0.98511 0.94572 1.02405 0.91510 0.91380 0.90210 0.91505 0.91694 0.84635 0.83852 0.73739 0.92354 0.92418 0.92556 0.90568 0.89454 0.89343 0.90699 0.83655 0.91272 0.91168 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.59 9.18 -19.42 -0.18 -3.77 16 4 C 0.18 2.37 6.66 -39.22 -0.26 2.11 16 5 C -0.23 -2.91 9.04 -39.43 -0.36 -3.26 16 6 C 0.02 0.30 9.51 -39.60 -0.38 -0.08 16 7 C -0.70 -10.85 5.94 -39.56 -0.23 -11.09 16 8 S 2.70 45.09 5.73 -107.50 -0.62 44.47 16 9 O -0.97 -17.72 16.70 -57.17 -0.96 -18.67 16 10 O -0.97 -17.72 17.28 -57.17 -0.99 -18.71 16 11 N -1.09 -19.57 5.94 -10.61 -0.06 -19.63 16 12 C 0.15 2.98 5.68 -4.04 -0.02 2.96 16 13 C -0.01 -0.15 0.89 -155.66 -0.14 -0.29 16 14 C -0.49 -12.63 9.05 -34.44 -0.31 -12.94 16 15 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.97 13.96 55.43 0.77 -25.19 16 18 Si 0.88 20.58 24.94 -169.99 -4.24 16.34 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.25 -5.51 5.69 56.52 0.32 -5.19 16 22 C -0.18 -3.44 9.96 -26.70 -0.27 -3.71 16 23 C -0.20 -3.94 7.35 -26.70 -0.20 -4.13 16 24 C 0.02 0.22 9.17 -39.60 -0.36 -0.14 16 25 C -0.14 -1.90 5.89 -104.47 -0.62 -2.52 16 26 C -0.10 -1.14 9.79 36.01 0.35 -0.79 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 33 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 34 H 0.43 7.64 8.39 -34.47 -0.29 7.35 16 35 H 0.06 1.15 7.01 -51.93 -0.36 0.79 16 36 H 0.06 1.02 7.61 -51.93 -0.40 0.62 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.09 1.85 7.17 -51.93 -0.37 1.48 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.15 1.91 7.62 -52.49 -0.40 1.51 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 45 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -32.43 379.80 -9.60 -42.03 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.75 Total: 9.19 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -2.30 Total: -31.79 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.71 Total: -44.82 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -2.12 Total: -41.15 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.24 Total: 16.34 kcal Atomic # 16 Polarization: 45.09 SS G_CDS: -0.62 Total: 44.47 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.43 -9.60 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575239423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.824 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds