Wall clock time and date at job start Tue Mar 31 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47366 * 2 1 4 4 C 1.35898 * 117.00181 * 179.97438 * 3 2 1 5 5 C 1.38759 * 120.05347 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94428 * 180.02562 * 5 4 3 7 7 C 1.38286 * 120.05411 * 0.27019 * 6 5 4 8 8 S 1.76202 * 119.94633 * 179.70146 * 7 6 5 9 9 O 1.42095 * 106.40753 * 203.54633 * 8 7 6 10 10 O 1.42106 * 106.39659 * 336.46776 * 8 7 6 11 11 N 1.65602 * 107.21682 * 90.00164 * 8 7 6 12 12 C 1.46502 * 119.99573 * 64.60012 * 11 8 7 13 13 C 1.53003 * 109.46904 * 159.82179 * 12 11 8 14 14 C 1.50702 * 115.54556 * 65.63953 * 13 12 11 15 15 H 1.08000 * 119.99762 * 264.62971 * 14 13 12 16 16 C 1.37876 * 120.00088 * 84.63960 * 14 13 12 17 17 N 1.31518 * 120.00101 * 184.32431 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 4.31892 * 16 14 13 19 19 H 1.48501 * 109.46871 * 94.16273 * 18 16 14 20 20 H 1.48501 * 109.47299 * 214.15963 * 18 16 14 21 21 H 1.48497 * 109.47193 * 334.15952 * 18 16 14 22 22 C 1.52991 * 117.50225 * 279.97129 * 13 12 11 23 23 C 1.52995 * 117.49868 * 211.30836 * 13 12 11 24 24 C 1.38248 * 120.11381 * 359.45432 * 7 6 5 25 25 C 1.38173 * 120.05005 * 0.54849 * 24 7 6 26 26 C 1.50707 * 120.02396 * 179.70558 * 25 24 7 27 27 H 1.08998 * 109.46805 * 300.00361 * 1 2 3 28 28 H 1.09001 * 109.47025 * 59.99809 * 1 2 3 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46805 * 239.99639 * 2 1 3 31 31 H 1.09001 * 109.47025 * 120.00191 * 2 1 3 32 32 H 1.08002 * 120.02717 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.97052 * 180.02562 * 6 5 4 34 34 H 0.96995 * 120.00302 * 244.59796 * 11 8 7 35 35 H 1.09002 * 109.47018 * 279.81926 * 12 11 8 36 36 H 1.09003 * 109.47007 * 39.82449 * 12 11 8 37 37 H 0.96997 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.09001 * 117.49697 * 359.97438 * 22 13 12 39 39 H 1.09002 * 117.50456 * 145.01587 * 22 13 12 40 40 H 1.09000 * 117.49880 * 214.98299 * 23 13 12 41 41 H 1.09000 * 117.50270 * 359.97438 * 23 13 12 42 42 H 1.08000 * 119.97584 * 180.29459 * 24 7 6 43 43 H 1.08997 * 109.46718 * 270.01785 * 26 25 24 44 44 H 1.09003 * 109.46889 * 30.01788 * 26 25 24 45 45 H 1.08997 * 109.47145 * 150.01756 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.2000 0.4256 0.0005 6 6 5.5690 0.6092 0.0016 7 6 6.0963 1.8875 0.0084 8 16 7.8431 2.1184 0.0177 9 8 8.0746 3.4080 0.5676 10 8 8.4019 0.9301 0.5609 11 7 8.3368 2.1878 -1.5615 12 6 7.8904 3.2872 -2.4208 13 6 8.8363 3.4163 -3.6165 14 6 8.8364 2.2522 -4.5736 15 1 9.5748 1.4705 -4.4729 16 6 7.8941 2.1854 -5.5779 17 7 7.8402 1.1292 -6.3598 18 14 6.6939 3.5948 -5.8278 19 1 7.2300 4.5254 -6.8534 20 1 5.3865 3.0569 -6.2826 21 1 6.5110 4.3223 -4.5463 22 6 10.1615 4.1474 -3.3932 23 6 9.0465 4.8135 -4.2033 24 6 5.2553 2.9848 0.0026 25 6 3.8852 2.8064 0.0016 26 6 2.9690 4.0030 0.0021 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.7885 -0.5730 0.0005 33 1 6.2280 -0.2464 0.0012 34 1 8.9215 1.5006 -1.9175 35 1 6.8805 3.0831 -2.7768 36 1 7.8943 4.2172 -1.8523 37 1 7.1771 1.0821 -7.0661 38 1 10.3593 4.5369 -2.3946 39 1 11.0335 3.7868 -3.9389 40 1 9.1853 4.8908 -5.2816 41 1 8.5106 5.6407 -3.7379 42 1 5.6696 3.9822 0.0031 43 1 2.7477 4.2907 1.0299 44 1 3.4549 4.8329 -0.5110 45 1 2.0417 3.7508 -0.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575239423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:27 Heat of formation + Delta-G solvation = -91.015690 kcal Electronic energy + Delta-G solvation = -27875.392401 eV Core-core repulsion = 23984.995999 eV Total energy + Delta-G solvation = -3890.396402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44178 -39.08166 -38.74976 -38.27050 -36.94069 -34.93178 -34.16488 -34.11827 -32.68091 -31.10931 -28.14771 -27.91729 -26.63199 -25.23429 -23.57520 -23.24469 -22.51030 -21.06176 -20.26137 -19.31933 -18.60544 -18.57140 -17.98630 -17.53295 -17.22425 -16.85007 -16.73939 -15.84934 -15.63705 -15.21448 -15.06088 -14.91074 -14.72797 -14.40533 -14.33237 -14.27448 -14.09204 -13.68643 -13.39815 -13.29721 -13.20601 -13.14927 -13.13859 -13.03834 -12.95510 -12.73478 -12.70826 -12.09863 -11.95879 -11.90814 -11.85204 -11.81497 -11.39424 -11.01200 -10.72700 -10.30759 -10.14746 -10.07747 -9.54238 -8.24972 -6.31795 -0.58775 -0.18985 0.14411 1.38578 1.43009 1.54056 1.98260 2.03702 2.37463 2.41278 2.77771 3.09972 3.22839 3.34719 3.59228 3.68033 3.99488 4.02045 4.03168 4.08831 4.16823 4.29890 4.36839 4.41508 4.42794 4.47255 4.50343 4.62993 4.72592 4.77580 4.79404 4.89904 4.92960 4.95202 4.97144 5.10917 5.12105 5.17054 5.21705 5.25338 5.50181 5.53751 5.57303 5.74302 6.16243 6.19506 6.35570 6.77144 7.38497 8.89772 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.004276 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.920118 B = 6546.313159 C = 7799.835940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.037 3.963 3 O -0.314 6.314 4 C 0.176 3.824 5 C -0.228 4.228 6 C 0.004 3.996 7 C -0.717 4.717 8 S 2.714 3.286 9 O -0.982 6.982 10 O -0.989 6.989 11 N -1.099 6.099 12 C 0.156 3.844 13 C -0.032 4.032 14 C -0.480 4.480 15 H 0.038 0.962 16 C 0.025 3.975 17 N -0.947 5.947 18 Si 0.926 3.074 19 H -0.275 1.275 20 H -0.303 1.303 21 H -0.220 1.220 22 C -0.165 4.165 23 C -0.189 4.189 24 C 0.003 3.997 25 C -0.150 4.150 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.422 0.578 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.156 0.844 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 2.180 14.345 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.037 4.037 3 O -0.227 6.227 4 C 0.128 3.872 5 C -0.247 4.247 6 C -0.015 4.015 7 C -0.806 4.806 8 S 2.806 3.194 9 O -0.972 6.972 10 O -0.980 6.980 11 N -0.860 5.860 12 C 0.029 3.971 13 C -0.035 4.035 14 C -0.518 4.518 15 H 0.057 0.943 16 C -0.172 4.172 17 N -0.586 5.586 18 Si 0.751 3.249 19 H -0.201 1.201 20 H -0.231 1.231 21 H -0.142 1.142 22 C -0.202 4.202 23 C -0.228 4.228 24 C -0.017 4.017 25 C -0.152 4.152 26 C -0.160 4.160 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.174 0.826 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.132 2.450 15.021 20.769 hybrid contribution -0.584 -0.696 -1.313 1.596 sum -14.716 1.754 13.708 20.188 Atomic orbital electron populations 1.21803 0.90934 1.04340 1.03387 1.23231 0.97353 0.80388 1.02729 1.86089 1.17804 1.31810 1.87025 1.19219 0.83123 0.93927 0.90909 1.21602 0.93691 0.99637 1.09815 1.20912 0.95969 0.95525 0.89116 1.30661 1.25934 1.00645 1.23335 1.00934 0.73727 0.72630 0.72080 1.93517 1.85009 1.41575 1.77076 1.93521 1.77892 1.49165 1.77409 1.55135 1.63701 1.37145 1.29969 1.20990 0.97159 0.88040 0.90891 1.19431 0.96756 0.91600 0.95675 1.20372 1.14203 1.05632 1.11559 0.94329 1.25745 0.98680 0.97634 0.95186 1.70049 1.37006 1.30700 1.20881 0.86076 0.77560 0.80363 0.80912 1.20069 1.23068 1.14215 1.22882 0.92607 1.04206 1.00514 1.23091 1.04298 0.96263 0.99100 1.20887 0.92195 0.98370 0.90200 1.19679 0.94336 0.94074 1.07094 1.20681 0.98038 0.93841 1.03446 0.91362 0.91910 0.88113 0.91173 0.90337 0.82040 0.83277 0.74187 0.92843 0.89935 0.92794 0.88141 0.90228 0.90460 0.87573 0.82608 0.89934 0.90180 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.04 0.53 5.46 71.98 0.39 0.93 16 3 O -0.31 -6.63 9.18 -92.41 -0.85 -7.48 16 4 C 0.18 4.32 6.66 22.51 0.15 4.47 16 5 C -0.23 -5.46 9.04 22.37 0.20 -5.26 16 6 C 0.00 0.12 9.51 22.25 0.21 0.33 16 7 C -0.72 -21.37 5.94 22.28 0.13 -21.24 16 8 S 2.71 88.86 5.73 -56.49 -0.32 88.54 16 9 O -0.98 -34.59 16.70 -128.00 -2.14 -36.73 16 10 O -0.99 -36.11 17.28 -128.00 -2.21 -38.32 16 11 N -1.10 -38.67 5.94 -187.48 -1.11 -39.78 16 12 C 0.16 5.73 5.68 86.38 0.49 6.22 16 13 C -0.03 -1.35 0.89 -52.93 -0.05 -1.40 16 14 C -0.48 -25.24 9.05 25.60 0.23 -25.00 16 15 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 16 C 0.03 1.38 5.47 84.65 0.46 1.85 16 17 N -0.95 -56.81 13.96 21.45 0.30 -56.51 16 18 Si 0.93 41.69 24.94 68.60 1.71 43.40 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.22 -8.60 5.69 99.48 0.57 -8.03 16 22 C -0.16 -6.07 9.96 30.61 0.30 -5.77 16 23 C -0.19 -7.05 7.35 30.62 0.23 -6.82 16 24 C 0.00 0.07 9.17 22.26 0.20 0.28 16 25 C -0.15 -3.79 5.89 -19.77 -0.12 -3.91 16 26 C -0.10 -2.01 9.79 71.24 0.70 -1.32 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 31 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 32 H 0.16 2.84 6.30 -2.91 -0.02 2.82 16 33 H 0.15 3.80 7.61 -2.91 -0.02 3.78 16 34 H 0.42 15.40 8.39 -96.75 -0.81 14.59 16 35 H 0.05 2.01 7.01 -2.39 -0.02 1.99 16 36 H 0.08 2.64 7.61 -2.39 -0.02 2.62 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.08 3.06 7.17 -2.39 -0.02 3.04 16 41 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.16 3.79 7.62 -2.91 -0.02 3.76 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 45 H 0.07 1.38 7.53 -2.39 -0.02 1.37 16 Total: -1.00 -70.29 379.80 -0.29 -70.58 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.05 Total: 33.73 kcal Atomic # 6 Polarization: -61.71 SS G_CDS: 4.28 Total: -57.43 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -0.81 Total: -96.29 kcal Atomic # 8 Polarization: -77.34 SS G_CDS: -5.20 Total: -82.54 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.71 Total: 43.40 kcal Atomic # 16 Polarization: 88.86 SS G_CDS: -0.32 Total: 88.54 kcal Total: -70.29 -0.29 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575239423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.434 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds