Wall clock time and date at job start Tue Mar 31 2020 23:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99531 * 2 1 4 4 O 1.21283 * 120.00285 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99703 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46956 * 180.02562 * 5 3 2 7 7 S 1.81401 * 109.47023 * 180.02562 * 6 5 3 8 8 C 1.81397 * 102.99976 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46846 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47051 * 304.99249 * 9 8 7 11 11 O 1.42893 * 109.47364 * 64.99990 * 9 8 7 12 12 C 1.53009 * 109.46831 * 184.99732 * 9 8 7 13 13 O 1.42897 * 109.46921 * 174.99581 * 12 9 8 14 14 C 1.35675 * 117.00125 * 180.02562 * 13 12 9 15 15 C 1.39313 * 119.81487 * 359.72422 * 14 13 12 16 16 C 1.36440 * 120.18365 * 179.75720 * 15 14 13 17 17 C 1.40831 * 119.81045 * 0.52339 * 16 15 14 18 18 C 1.41217 * 120.17778 * 179.71623 * 17 16 15 19 19 H 1.08004 * 120.00061 * 24.56411 * 18 17 16 20 20 C 1.39890 * 120.00032 * 204.56166 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.94615 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.94283 * 20 18 17 23 23 H 1.48504 * 109.46983 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47133 * 119.99688 * 22 20 18 25 25 H 1.48495 * 109.47273 * 240.00309 * 22 20 18 26 26 C 1.40834 * 119.64137 * 359.73552 * 17 16 15 27 27 C 1.36430 * 119.81194 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47504 * 299.99360 * 1 2 3 29 29 H 1.08998 * 109.47305 * 59.99771 * 1 2 3 30 30 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00149 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.46959 * 60.00551 * 5 3 2 33 33 H 1.08998 * 109.47174 * 300.00242 * 5 3 2 34 34 H 1.09001 * 109.47207 * 60.00426 * 6 5 3 35 35 H 1.08998 * 109.46953 * 299.99858 * 6 5 3 36 36 H 1.09002 * 109.47417 * 60.00167 * 8 7 6 37 37 H 1.08998 * 109.47314 * 299.99429 * 8 7 6 38 38 H 0.96701 * 113.99898 * 59.99440 * 11 9 8 39 39 H 1.09003 * 109.46699 * 55.00020 * 12 9 8 40 40 H 1.08999 * 109.47088 * 295.00279 * 12 9 8 41 41 H 1.08000 * 119.90714 * 0.02972 * 15 14 13 42 42 H 1.08007 * 120.09092 * 180.25554 * 16 15 14 43 43 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.09009 * 179.97438 * 26 17 16 45 45 H 1.08004 * 119.90814 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1557 2.6098 0.0002 7 16 5.9698 2.6099 -0.0013 8 6 6.3777 4.3774 0.0006 9 6 7.8980 4.5498 -0.0010 10 1 8.3265 4.0040 0.8396 11 8 8.4340 4.0395 -1.2234 12 6 8.2429 6.0351 0.1262 13 8 9.6591 6.1870 0.2419 14 6 10.1350 7.4516 0.3644 15 6 9.2500 8.5275 0.3669 16 6 9.7200 9.8020 0.4945 17 6 11.1049 10.0290 0.6129 18 6 11.6002 11.3454 0.7394 19 1 10.9668 12.1249 1.1363 20 6 12.9114 11.6397 0.3508 21 7 13.5595 10.8207 -0.4381 22 14 13.7373 13.2013 0.9577 23 1 12.7984 13.9506 1.8308 24 1 14.9560 12.8489 1.7296 25 1 14.1142 14.0457 -0.2043 26 6 11.9931 8.9361 0.6040 27 6 11.5064 7.6675 0.4805 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0088 0.6538 -0.8908 33 1 4.0095 0.6532 0.8891 34 1 3.7928 3.1230 0.8907 35 1 3.7920 3.1242 -0.8893 36 1 5.9595 4.8459 0.8916 37 1 5.9582 4.8481 -0.8884 38 1 8.0960 4.4797 -2.0152 39 1 7.7599 6.4455 1.0130 40 1 7.8914 6.5668 -0.7580 41 1 8.1886 8.3519 0.2719 42 1 9.0322 10.6348 0.5004 43 1 14.4688 11.0246 -0.7073 44 1 13.0565 9.1018 0.6939 45 1 12.1861 6.8283 0.4731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582363098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:40 Heat of formation + Delta-G solvation = -115.507225 kcal Electronic energy + Delta-G solvation = -24958.339759 eV Core-core repulsion = 21066.881324 eV Total energy + Delta-G solvation = -3891.458435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.14497 -39.06831 -37.50176 -36.03789 -35.15555 -33.39660 -33.32461 -31.65453 -29.78516 -29.04672 -27.90741 -26.83889 -24.70310 -24.29737 -22.21714 -20.91693 -20.69138 -20.61732 -17.96682 -17.43616 -17.32318 -16.65868 -16.51276 -16.35344 -16.25821 -15.71316 -15.24216 -14.93714 -14.79608 -14.40359 -14.27860 -13.95890 -13.78888 -13.29042 -13.06688 -12.97005 -12.77026 -12.68565 -12.44309 -12.21787 -12.12115 -11.86130 -11.82005 -11.40899 -11.20443 -11.09208 -10.85344 -10.63020 -10.42690 -10.20045 -10.08699 -9.98642 -9.81968 -9.69490 -9.34645 -9.02760 -7.91084 -7.65073 -7.04182 -6.72858 -4.26067 1.20483 2.12580 2.24930 2.75922 2.76426 2.94472 3.08947 3.14002 3.20042 3.80892 3.95347 4.18487 4.30050 4.38473 4.46044 4.61152 4.72459 4.73550 4.82676 4.96821 5.00780 5.03357 5.18500 5.21524 5.27222 5.31685 5.43333 5.56522 5.66357 5.81916 5.92483 6.04629 6.21937 6.71698 6.88614 6.97062 7.10402 7.17927 7.45005 7.54860 7.61166 7.67648 7.78115 8.00283 8.19873 8.43828 8.64554 8.89523 8.97955 10.21621 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.001450 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.890933 B =19310.026738 C =19866.999835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.516 3.484 4 O -0.537 6.537 5 C -0.124 4.124 6 C -0.081 4.081 7 S -0.228 6.228 8 C -0.120 4.120 9 C 0.129 3.871 10 H 0.115 0.885 11 O -0.541 6.541 12 C 0.043 3.957 13 O -0.316 6.316 14 C -0.011 4.011 15 C -0.168 4.168 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.906 3.094 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.404 0.596 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.373 0.627 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.280 0.720 44 H 0.126 0.874 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.459 -20.364 -0.040 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.389 5.389 3 C 0.301 3.699 4 O -0.414 6.414 5 C -0.165 4.165 6 C -0.230 4.230 7 S 0.000 6.000 8 C -0.269 4.269 9 C 0.068 3.932 10 H 0.132 0.868 11 O -0.345 6.345 12 C -0.036 4.036 13 O -0.232 6.232 14 C -0.054 4.054 15 C -0.187 4.187 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.731 3.269 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.136 4.136 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.220 0.780 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.144 0.856 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.575 -21.042 0.235 28.069 hybrid contribution -0.875 1.955 -0.194 2.150 sum -19.450 -19.087 0.041 27.251 Atomic orbital electron populations 1.21557 0.79405 1.02354 1.02485 1.45803 1.07956 1.08786 1.76365 1.20633 0.90019 0.83669 0.75555 1.90738 1.70497 1.31270 1.48847 1.21334 0.91630 0.97605 1.05892 1.23105 0.94361 0.99037 1.06494 1.86992 1.04832 1.10051 1.98116 1.24119 1.00888 0.95657 1.06228 1.21566 0.88641 0.93465 0.89530 0.86756 1.86670 1.70075 1.62882 1.14897 1.23075 0.83761 0.95481 1.01234 1.85879 1.20092 1.26757 1.90438 1.18615 0.93070 0.81601 1.12088 1.20390 0.96622 0.93637 1.08005 1.20554 0.95795 0.94523 1.10979 1.17608 0.90616 0.93569 0.89640 1.19496 0.96997 0.95077 1.37753 0.90518 1.25879 0.97296 0.98320 0.92687 1.69846 1.11966 1.36349 1.24245 0.86293 0.79582 0.81514 0.79507 1.18478 1.19725 1.20069 1.20981 1.00330 0.90200 1.03758 1.19839 0.91213 0.97201 1.05384 0.92126 0.92135 0.90525 0.76234 0.87698 0.87735 0.89327 0.89304 0.88662 0.89337 0.77960 0.92232 0.92706 0.88979 0.88764 0.90948 0.85642 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 10.70 59.85 0.64 1.00 16 2 N -0.74 -3.43 5.71 -67.08 -0.38 -3.81 16 3 C 0.52 3.96 7.83 -10.98 -0.09 3.87 16 4 O -0.54 -6.45 15.98 5.56 0.09 -6.36 16 5 C -0.12 -0.73 5.71 -27.88 -0.16 -0.89 16 6 C -0.08 -0.66 5.23 37.16 0.19 -0.47 16 7 S -0.23 -2.24 21.52 -107.50 -2.31 -4.56 16 8 C -0.12 -1.17 5.60 37.16 0.21 -0.96 16 9 C 0.13 1.62 3.24 -26.72 -0.09 1.53 16 10 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 11 O -0.54 -7.35 13.06 -40.08 -0.52 -7.88 16 12 C 0.04 0.65 4.36 37.16 0.16 0.81 16 13 O -0.32 -6.45 10.09 -23.58 -0.24 -6.69 16 14 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 15 C -0.17 -3.78 8.96 -39.83 -0.36 -4.13 16 16 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 17 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 18 C -0.46 -12.33 9.04 -37.83 -0.34 -12.67 16 19 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 20 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 21 N -0.80 -20.73 10.96 55.54 0.61 -20.12 16 22 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 27 C -0.12 -2.87 9.92 -39.83 -0.40 -3.27 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.78 8.10 -51.92 -0.42 0.36 16 35 H 0.09 0.78 8.10 -51.92 -0.42 0.36 16 36 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.37 3.81 9.05 45.56 0.41 4.22 16 39 H 0.06 0.84 7.66 -51.93 -0.40 0.45 16 40 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 41 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 42 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16 45 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -33.19 393.89 -9.75 -42.94 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.01 Total: 8.08 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -1.89 Total: -21.23 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.23 Total: -23.93 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.67 Total: -20.92 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.31 Total: -4.56 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.19 -9.75 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582363098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.564 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds