Wall clock time and date at job start Tue Mar 31 2020 23:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99531 * 2 1 4 4 O 1.21283 * 120.00285 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99703 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46956 * 180.02562 * 5 3 2 7 7 S 1.81401 * 109.47023 * 180.02562 * 6 5 3 8 8 C 1.81397 * 102.99976 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46846 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47051 * 304.99249 * 9 8 7 11 11 O 1.42893 * 109.47364 * 64.99990 * 9 8 7 12 12 C 1.53009 * 109.46831 * 184.99732 * 9 8 7 13 13 O 1.42897 * 109.46921 * 174.99581 * 12 9 8 14 14 C 1.35675 * 117.00125 * 180.02562 * 13 12 9 15 15 C 1.39313 * 119.81487 * 359.72422 * 14 13 12 16 16 C 1.36440 * 120.18365 * 179.75720 * 15 14 13 17 17 C 1.40831 * 119.81045 * 0.52339 * 16 15 14 18 18 C 1.41217 * 120.17778 * 179.71623 * 17 16 15 19 19 H 1.08004 * 120.00061 * 24.56411 * 18 17 16 20 20 C 1.39890 * 120.00032 * 204.56166 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.94615 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.94283 * 20 18 17 23 23 H 1.48504 * 109.46983 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47133 * 119.99688 * 22 20 18 25 25 H 1.48495 * 109.47273 * 240.00309 * 22 20 18 26 26 C 1.40834 * 119.64137 * 359.73552 * 17 16 15 27 27 C 1.36430 * 119.81194 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47504 * 299.99360 * 1 2 3 29 29 H 1.08998 * 109.47305 * 59.99771 * 1 2 3 30 30 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00149 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.46959 * 60.00551 * 5 3 2 33 33 H 1.08998 * 109.47174 * 300.00242 * 5 3 2 34 34 H 1.09001 * 109.47207 * 60.00426 * 6 5 3 35 35 H 1.08998 * 109.46953 * 299.99858 * 6 5 3 36 36 H 1.09002 * 109.47417 * 60.00167 * 8 7 6 37 37 H 1.08998 * 109.47314 * 299.99429 * 8 7 6 38 38 H 0.96701 * 113.99898 * 59.99440 * 11 9 8 39 39 H 1.09003 * 109.46699 * 55.00020 * 12 9 8 40 40 H 1.08999 * 109.47088 * 295.00279 * 12 9 8 41 41 H 1.08000 * 119.90714 * 0.02972 * 15 14 13 42 42 H 1.08007 * 120.09092 * 180.25554 * 16 15 14 43 43 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.09009 * 179.97438 * 26 17 16 45 45 H 1.08004 * 119.90814 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1557 2.6098 0.0002 7 16 5.9698 2.6099 -0.0013 8 6 6.3777 4.3774 0.0006 9 6 7.8980 4.5498 -0.0010 10 1 8.3265 4.0040 0.8396 11 8 8.4340 4.0395 -1.2234 12 6 8.2429 6.0351 0.1262 13 8 9.6591 6.1870 0.2419 14 6 10.1350 7.4516 0.3644 15 6 9.2500 8.5275 0.3669 16 6 9.7200 9.8020 0.4945 17 6 11.1049 10.0290 0.6129 18 6 11.6002 11.3454 0.7394 19 1 10.9668 12.1249 1.1363 20 6 12.9114 11.6397 0.3508 21 7 13.5595 10.8207 -0.4381 22 14 13.7373 13.2013 0.9577 23 1 12.7984 13.9506 1.8308 24 1 14.9560 12.8489 1.7296 25 1 14.1142 14.0457 -0.2043 26 6 11.9931 8.9361 0.6040 27 6 11.5064 7.6675 0.4805 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0088 0.6538 -0.8908 33 1 4.0095 0.6532 0.8891 34 1 3.7928 3.1230 0.8907 35 1 3.7920 3.1242 -0.8893 36 1 5.9595 4.8459 0.8916 37 1 5.9582 4.8481 -0.8884 38 1 8.0960 4.4797 -2.0152 39 1 7.7599 6.4455 1.0130 40 1 7.8914 6.5668 -0.7580 41 1 8.1886 8.3519 0.2719 42 1 9.0322 10.6348 0.5004 43 1 14.4688 11.0246 -0.7073 44 1 13.0565 9.1018 0.6939 45 1 12.1861 6.8283 0.4731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582363098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:39 Heat of formation + Delta-G solvation = -138.379698 kcal Electronic energy + Delta-G solvation = -24959.331584 eV Core-core repulsion = 21066.881324 eV Total energy + Delta-G solvation = -3892.450260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73272 -40.65470 -38.88342 -37.59718 -35.66747 -35.18665 -33.96987 -32.71872 -31.60746 -30.91318 -28.44385 -27.99816 -26.46090 -24.93016 -23.48714 -22.51114 -22.23806 -21.42999 -19.26604 -18.83930 -18.49565 -17.84759 -17.50931 -17.07501 -16.94825 -16.90336 -16.52044 -16.11489 -15.74485 -15.73975 -15.35957 -15.18989 -14.98087 -14.63088 -14.09250 -13.96881 -13.90406 -13.62252 -13.56111 -13.51200 -13.23285 -13.05228 -12.96448 -12.79745 -12.64045 -12.40813 -12.39785 -12.10531 -11.73237 -11.59021 -11.31240 -11.11795 -10.98692 -10.93580 -10.87895 -10.16970 -9.56517 -8.93199 -8.66925 -8.59921 -6.23132 0.46726 0.94237 1.02319 1.40093 1.50857 1.52088 1.55298 1.56083 2.22949 2.33398 2.50920 2.72479 3.38231 3.63998 3.69760 3.77901 3.86016 3.90419 3.91411 3.97249 4.17464 4.28025 4.34648 4.43520 4.44731 4.52036 4.55730 4.58477 4.70360 4.84116 4.85093 4.91697 4.94014 5.06526 5.21460 5.28152 5.40559 5.58023 5.64199 5.87814 6.05671 6.26040 6.49791 6.55982 6.74120 6.80966 6.94930 7.09383 7.20598 8.36877 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.001450 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.890933 B =19310.026738 C =19866.999835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.723 5.723 3 C 0.513 3.487 4 O -0.588 6.588 5 C -0.117 4.117 6 C -0.071 4.071 7 S -0.247 6.247 8 C -0.113 4.113 9 C 0.139 3.861 10 H 0.103 0.897 11 O -0.560 6.560 12 C 0.034 3.966 13 O -0.330 6.330 14 C -0.001 4.001 15 C -0.164 4.164 16 C -0.208 4.208 17 C 0.054 3.946 18 C -0.499 4.499 19 H 0.076 0.924 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.981 3.019 23 H -0.258 1.258 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.152 4.152 27 C -0.133 4.133 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.421 0.579 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.387 0.613 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.287 0.713 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.828 -21.461 -0.011 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.375 5.375 3 C 0.299 3.701 4 O -0.469 6.469 5 C -0.157 4.157 6 C -0.220 4.220 7 S -0.019 6.019 8 C -0.261 4.261 9 C 0.078 3.922 10 H 0.120 0.880 11 O -0.366 6.366 12 C -0.044 4.044 13 O -0.245 6.245 14 C -0.044 4.044 15 C -0.183 4.183 16 C -0.228 4.228 17 C 0.052 3.948 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.180 4.180 21 N -0.458 5.458 22 Si 0.802 3.198 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.191 1.191 26 C -0.172 4.172 27 C -0.152 4.152 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.258 0.742 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.960 -22.205 0.253 29.859 hybrid contribution -0.597 2.083 -0.246 2.181 sum -20.557 -20.122 0.007 28.766 Atomic orbital electron populations 1.21664 0.79009 1.04232 1.01298 1.45755 1.08351 1.08818 1.74610 1.20932 0.90676 0.83652 0.74854 1.90719 1.71501 1.33117 1.51524 1.21332 0.90364 0.96483 1.07562 1.23055 0.92710 1.00486 1.05750 1.87042 1.06454 1.10209 1.98169 1.24003 0.98653 0.95895 1.07588 1.21416 0.90364 0.91439 0.88953 0.87960 1.86637 1.70789 1.63406 1.15813 1.23463 0.80825 0.97626 1.02446 1.85869 1.23560 1.25049 1.90069 1.18681 0.92725 0.82997 1.10039 1.20700 0.98521 0.92519 1.06544 1.20806 0.95241 0.95977 1.10766 1.17966 0.91914 0.94022 0.90883 1.19742 0.98417 0.95270 1.39460 0.90590 1.26730 0.97336 1.01752 0.92158 1.69899 1.12597 1.38310 1.25019 0.85170 0.78371 0.77182 0.79044 1.18143 1.19002 1.19149 1.20892 0.99699 0.91096 1.05474 1.20003 0.92608 0.96867 1.05692 0.93352 0.93350 0.87107 0.74187 0.85968 0.85978 0.90107 0.90045 0.87504 0.87851 0.76363 0.90839 0.91354 0.85239 0.87619 0.90208 0.87267 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.70 127.77 1.37 1.94 16 2 N -0.72 -5.38 5.71 -484.53 -2.77 -8.15 16 3 C 0.51 7.25 7.83 87.66 0.69 7.93 16 4 O -0.59 -14.05 15.98 -3.04 -0.05 -14.10 16 5 C -0.12 -1.15 5.71 29.85 0.17 -0.98 16 6 C -0.07 -1.06 5.23 71.98 0.38 -0.68 16 7 S -0.25 -4.40 21.52 -56.49 -1.22 -5.62 16 8 C -0.11 -1.94 5.60 71.98 0.40 -1.53 16 9 C 0.14 3.22 3.24 30.60 0.10 3.32 16 10 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 11 O -0.56 -14.28 13.06 -144.34 -1.88 -16.17 16 12 C 0.03 0.94 4.36 71.99 0.31 1.25 16 13 O -0.33 -12.97 10.09 -85.29 -0.86 -13.83 16 14 C 0.00 -0.02 6.71 22.79 0.15 0.13 16 15 C -0.16 -7.14 8.96 22.11 0.20 -6.95 16 16 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 17 C 0.05 2.98 5.57 -21.28 -0.12 2.86 16 18 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.74 5.13 85.23 0.44 2.18 16 21 N -0.83 -44.24 10.96 21.82 0.24 -44.00 16 22 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 26 C -0.15 -8.25 8.64 22.48 0.19 -8.05 16 27 C -0.13 -6.59 9.92 22.11 0.22 -6.37 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.42 0.15 8.83 -92.71 -0.82 -0.67 16 32 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.39 7.16 9.05 -74.06 -0.67 6.49 16 39 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 40 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16 41 H 0.13 4.57 6.27 -2.91 -0.02 4.55 16 42 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 43 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 44 H 0.11 6.15 6.16 -2.91 -0.02 6.14 16 45 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -73.48 393.89 -0.05 -73.53 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.47 Total: 29.62 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 4.93 Total: -41.93 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -2.53 Total: -52.15 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -2.79 Total: -44.10 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -1.22 Total: -5.62 kcal Total: -73.48 -0.05 -73.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582363098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.848 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds