Wall clock time and date at job start Tue Mar 31 2020 22:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21257 * 120.00372 * 2 1 4 4 C 1.47166 * 119.99752 * 179.97438 * 2 1 3 5 5 C 1.39867 * 120.17267 * 0.02562 * 4 2 1 6 6 C 1.37865 * 119.82599 * 179.97438 * 5 4 2 7 7 C 1.38425 * 120.17313 * 0.27385 * 6 5 4 8 8 C 1.38385 * 120.34739 * 359.44428 * 7 6 5 9 9 C 1.50694 * 119.91784 * 180.25632 * 8 7 6 10 10 N 1.46500 * 109.47378 * 270.30077 * 9 8 7 11 11 S 1.65597 * 120.00311 * 164.99288 * 10 9 8 12 12 O 1.42093 * 104.27951 * 181.07199 * 11 10 9 13 13 O 1.42093 * 104.27993 * 308.93432 * 11 10 9 14 14 C 1.81408 * 104.44724 * 65.00436 * 11 10 9 15 15 C 1.52996 * 109.47079 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47219 * 299.99647 * 15 14 11 17 17 C 1.53000 * 109.47232 * 60.00056 * 15 14 11 18 18 C 1.50706 * 109.47004 * 179.97438 * 15 14 11 19 19 H 1.08002 * 120.00105 * 0.83726 * 18 15 14 20 20 C 1.37874 * 120.00281 * 180.83416 * 18 15 14 21 21 N 1.31511 * 120.00118 * 194.58017 * 20 18 15 22 22 Si 1.86804 * 119.99730 * 14.57895 * 20 18 15 23 23 H 1.48502 * 109.46892 * 84.45403 * 22 20 18 24 24 H 1.48498 * 109.47210 * 204.45363 * 22 20 18 25 25 H 1.48497 * 109.47353 * 324.45901 * 22 20 18 26 26 C 1.37910 * 120.16875 * 0.55727 * 8 7 6 27 27 H 1.08998 * 109.47028 * 240.00430 * 1 2 3 28 28 H 1.09003 * 109.46518 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46761 * 119.99890 * 1 2 3 30 30 H 1.08001 * 120.08939 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.91412 * 180.02562 * 6 5 4 32 32 H 1.08004 * 119.82704 * 179.70318 * 7 6 5 33 33 H 1.09007 * 109.46697 * 30.30002 * 9 8 7 34 34 H 1.08997 * 109.47511 * 150.30171 * 9 8 7 35 35 H 0.96997 * 120.00071 * 344.99823 * 10 9 8 36 36 H 1.08999 * 109.46782 * 299.99874 * 14 11 10 37 37 H 1.08997 * 109.47173 * 59.99618 * 14 11 10 38 38 H 1.08995 * 109.47266 * 70.23677 * 16 15 14 39 39 H 1.09001 * 109.47389 * 190.23727 * 16 15 14 40 40 H 1.08999 * 109.47520 * 310.23375 * 16 15 14 41 41 H 1.08999 * 109.47436 * 59.99694 * 17 15 14 42 42 H 1.09008 * 109.47047 * 180.02562 * 17 15 14 43 43 H 1.08993 * 109.46979 * 299.99610 * 17 15 14 44 44 H 0.97001 * 119.99770 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.08649 * 179.74287 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2436 -3.6777 0.0006 7 6 3.6278 -3.6735 0.0063 8 6 4.3234 -2.4773 0.0005 9 6 5.8304 -2.4841 0.0009 10 7 6.3183 -2.4866 1.3823 11 16 7.8985 -2.8652 1.7016 12 8 7.9975 -2.7912 3.1171 13 8 8.1107 -4.0913 1.0155 14 6 8.8496 -1.5291 0.9263 15 6 10.3435 -1.7680 1.1539 16 6 10.6328 -1.7946 2.6560 17 6 10.7462 -3.1072 0.5331 18 6 11.1337 -0.6584 0.5093 19 1 10.6209 0.1448 0.0009 20 6 12.5111 -0.6684 0.5685 21 7 13.1901 0.4175 0.2698 22 14 13.4129 -2.2247 1.0730 23 1 13.5878 -3.1018 -0.1124 24 1 14.7442 -1.8682 1.6258 25 1 12.6234 -2.9412 2.1067 26 6 3.6411 -1.2788 0.0005 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4671 -2.4928 0.0006 31 1 1.7078 -4.6154 0.0002 32 1 4.1678 -4.6089 0.0111 33 1 6.1898 -3.3757 -0.5130 34 1 6.1980 -1.5957 -0.5126 35 1 5.7158 -2.2666 2.1099 36 1 8.6439 -1.5104 -0.1439 37 1 8.5624 -0.5750 1.3682 38 1 10.2102 -2.7001 3.0914 39 1 11.7105 -1.7820 2.8188 40 1 10.1839 -0.9207 3.1280 41 1 10.5401 -3.0883 -0.5370 42 1 11.8105 -3.2777 0.6957 43 1 10.1748 -3.9100 0.9990 44 1 14.1592 0.4103 0.3111 45 1 4.1854 -0.3459 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582975779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:00 Heat of formation + Delta-G solvation = -71.387641 kcal Electronic energy + Delta-G solvation = -27274.714477 eV Core-core repulsion = 23385.169211 eV Total energy + Delta-G solvation = -3889.545266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42574 -38.75310 -36.75658 -36.73193 -35.63623 -35.40002 -32.24349 -31.95341 -31.36213 -29.83533 -27.43877 -26.38771 -25.92152 -25.01121 -24.09317 -22.17360 -20.09013 -19.78583 -18.87116 -17.73946 -17.30754 -16.34959 -16.18195 -16.13170 -15.93706 -15.58455 -15.36761 -15.20144 -14.81280 -14.70527 -14.23744 -13.66119 -13.49043 -13.25390 -13.12576 -12.99208 -12.88584 -12.69187 -12.52581 -12.47466 -12.33881 -12.01687 -11.75925 -11.63356 -11.56522 -11.31282 -11.11183 -11.02088 -10.78006 -10.18172 -10.13464 -10.06829 -10.04860 -9.51425 -9.36441 -9.30373 -9.01393 -8.75252 -8.47704 -6.19608 -4.17102 0.26333 0.61358 0.96140 2.02493 3.01354 3.24950 3.34049 3.38544 3.44766 3.62662 4.09478 4.24043 4.33733 4.45091 4.55703 4.63269 4.65020 4.83408 4.92517 4.94618 4.95991 5.09505 5.14734 5.22882 5.36084 5.44397 5.51353 5.56404 5.60457 5.73313 5.88935 5.97196 5.98244 6.15945 6.19465 6.30847 6.43081 6.45831 6.48221 6.68740 6.86202 6.96674 7.12474 7.14731 7.30704 7.61985 8.38384 8.83352 9.44255 10.92940 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.002705 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.935114 B =10346.980306 C =11120.499405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.393 3.607 3 O -0.454 6.454 4 C -0.177 4.177 5 C -0.069 4.069 6 C -0.135 4.135 7 C -0.068 4.068 8 C -0.106 4.106 9 C 0.154 3.846 10 N -1.125 6.125 11 S 2.590 3.410 12 O -0.962 6.962 13 O -0.964 6.964 14 C -0.575 4.575 15 C 0.054 3.946 16 C -0.171 4.171 17 C -0.182 4.182 18 C -0.509 4.509 19 H 0.078 0.922 20 C 0.077 3.923 21 N -0.888 5.888 22 Si 0.874 3.126 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.246 1.246 26 C -0.045 4.045 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.266 0.734 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.992 -7.022 -1.393 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.271 3.729 3 O -0.329 6.329 4 C -0.178 4.178 5 C -0.088 4.088 6 C -0.153 4.153 7 C -0.086 4.086 8 C -0.108 4.108 9 C 0.028 3.972 10 N -0.882 5.882 11 S 2.688 3.312 12 O -0.952 6.952 13 O -0.954 6.954 14 C -0.708 4.708 15 C 0.052 3.948 16 C -0.228 4.228 17 C -0.238 4.238 18 C -0.547 4.547 19 H 0.096 0.904 20 C -0.126 4.126 21 N -0.525 5.525 22 Si 0.706 3.294 23 H -0.208 1.208 24 H -0.229 1.229 25 H -0.172 1.172 26 C -0.064 4.064 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.100 -7.193 -1.082 26.133 hybrid contribution 0.298 -0.157 0.046 0.340 sum -24.802 -7.350 -1.036 25.889 Atomic orbital electron populations 1.22248 0.93658 1.05265 1.04493 1.22529 0.91718 0.87584 0.71101 1.90577 1.72144 1.34262 1.35943 1.20522 0.94465 0.94914 1.07885 1.21470 1.00105 0.91484 0.95706 1.21163 0.94192 0.98307 1.01606 1.21482 0.94386 0.98169 0.94609 1.19850 0.95390 0.93155 1.02383 1.20227 0.90242 1.03563 0.83202 1.55861 1.29991 1.89044 1.13336 1.05677 0.73051 0.77355 0.75114 1.93574 1.84956 1.87813 1.28870 1.93538 1.84180 1.41523 1.76132 1.30378 1.10535 1.17064 1.12818 1.18229 0.87519 0.95427 0.93664 1.22683 1.03127 1.00305 0.96728 1.22822 1.01353 0.97428 1.02238 1.20655 0.90785 1.06915 1.36351 0.90363 1.24967 0.97512 0.95824 0.94319 1.69937 1.07512 1.26684 1.48347 0.87440 0.78026 0.84184 0.79793 1.20805 1.22921 1.17187 1.21442 0.93133 0.98500 0.93298 0.88810 0.89631 0.88816 0.84989 0.85081 0.84906 0.88954 0.90384 0.75279 0.85687 0.85322 0.94449 0.91429 0.92301 0.91754 0.93010 0.93185 0.92406 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.93 8.93 36.01 0.32 -0.61 16 2 C 0.39 3.45 7.23 -30.68 -0.22 3.23 16 3 O -0.45 -5.80 17.08 5.58 0.10 -5.71 16 4 C -0.18 -1.51 5.87 -105.07 -0.62 -2.12 16 5 C -0.07 -0.43 9.47 -39.11 -0.37 -0.80 16 6 C -0.13 -0.87 10.03 -39.65 -0.40 -1.27 16 7 C -0.07 -0.55 9.69 -39.46 -0.38 -0.93 16 8 C -0.11 -1.00 5.27 -104.69 -0.55 -1.55 16 9 C 0.15 1.61 6.25 -5.20 -0.03 1.58 16 10 N -1.13 -13.76 5.88 -11.66 -0.07 -13.83 16 11 S 2.59 43.10 4.50 -107.50 -0.48 42.62 16 12 O -0.96 -18.50 15.93 -57.54 -0.92 -19.42 16 13 O -0.96 -17.93 15.12 -57.54 -0.87 -18.80 16 14 C -0.57 -10.30 4.99 37.16 0.19 -10.12 16 15 C 0.05 1.24 0.52 -155.66 -0.08 1.15 16 16 C -0.17 -3.85 6.95 37.15 0.26 -3.59 16 17 C -0.18 -4.03 7.22 37.16 0.27 -3.76 16 18 C -0.51 -13.64 8.62 -34.44 -0.30 -13.93 16 19 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 20 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 21 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 22 Si 0.87 21.51 22.79 -169.99 -3.87 17.64 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.25 -5.67 4.67 56.52 0.26 -5.41 16 26 C -0.04 -0.44 9.25 -39.11 -0.36 -0.80 16 27 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 28 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.09 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.13 0.42 7.05 -52.49 -0.37 0.05 16 31 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.09 0.94 7.64 -51.93 -0.40 0.54 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.41 4.49 8.61 -34.46 -0.30 4.19 16 36 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 37 H 0.13 2.13 8.14 -51.93 -0.42 1.71 16 38 H 0.04 0.79 6.21 -51.93 -0.32 0.46 16 39 H 0.07 1.57 4.32 -51.93 -0.22 1.34 16 40 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.05 1.19 2.28 -51.92 -0.12 1.07 16 43 H 0.05 1.03 5.46 -51.93 -0.28 0.75 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.14 1.42 7.65 -52.49 -0.40 1.02 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -35.47 366.26 -8.52 -43.99 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.32 Total: 5.15 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -2.37 Total: -31.45 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.71 Total: -39.54 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -1.69 Total: -43.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -3.87 Total: 17.64 kcal Atomic # 16 Polarization: 43.10 SS G_CDS: -0.48 Total: 42.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.47 -8.52 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582975779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.400 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds