Wall clock time and date at job start Tue Mar 31 2020 22:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21257 * 120.00372 * 2 1 4 4 C 1.47166 * 119.99752 * 179.97438 * 2 1 3 5 5 C 1.39867 * 120.17267 * 0.02562 * 4 2 1 6 6 C 1.37865 * 119.82599 * 179.97438 * 5 4 2 7 7 C 1.38425 * 120.17313 * 0.27385 * 6 5 4 8 8 C 1.38385 * 120.34739 * 359.44428 * 7 6 5 9 9 C 1.50694 * 119.91784 * 180.25632 * 8 7 6 10 10 N 1.46500 * 109.47378 * 270.30077 * 9 8 7 11 11 S 1.65597 * 120.00311 * 164.99288 * 10 9 8 12 12 O 1.42093 * 104.27951 * 181.07199 * 11 10 9 13 13 O 1.42093 * 104.27993 * 308.93432 * 11 10 9 14 14 C 1.81408 * 104.44724 * 65.00436 * 11 10 9 15 15 C 1.52996 * 109.47079 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47219 * 299.99647 * 15 14 11 17 17 C 1.53000 * 109.47232 * 60.00056 * 15 14 11 18 18 C 1.50706 * 109.47004 * 179.97438 * 15 14 11 19 19 H 1.08002 * 120.00105 * 0.83726 * 18 15 14 20 20 C 1.37874 * 120.00281 * 180.83416 * 18 15 14 21 21 N 1.31511 * 120.00118 * 194.58017 * 20 18 15 22 22 Si 1.86804 * 119.99730 * 14.57895 * 20 18 15 23 23 H 1.48502 * 109.46892 * 84.45403 * 22 20 18 24 24 H 1.48498 * 109.47210 * 204.45363 * 22 20 18 25 25 H 1.48497 * 109.47353 * 324.45901 * 22 20 18 26 26 C 1.37910 * 120.16875 * 0.55727 * 8 7 6 27 27 H 1.08998 * 109.47028 * 240.00430 * 1 2 3 28 28 H 1.09003 * 109.46518 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46761 * 119.99890 * 1 2 3 30 30 H 1.08001 * 120.08939 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.91412 * 180.02562 * 6 5 4 32 32 H 1.08004 * 119.82704 * 179.70318 * 7 6 5 33 33 H 1.09007 * 109.46697 * 30.30002 * 9 8 7 34 34 H 1.08997 * 109.47511 * 150.30171 * 9 8 7 35 35 H 0.96997 * 120.00071 * 344.99823 * 10 9 8 36 36 H 1.08999 * 109.46782 * 299.99874 * 14 11 10 37 37 H 1.08997 * 109.47173 * 59.99618 * 14 11 10 38 38 H 1.08995 * 109.47266 * 70.23677 * 16 15 14 39 39 H 1.09001 * 109.47389 * 190.23727 * 16 15 14 40 40 H 1.08999 * 109.47520 * 310.23375 * 16 15 14 41 41 H 1.08999 * 109.47436 * 59.99694 * 17 15 14 42 42 H 1.09008 * 109.47047 * 180.02562 * 17 15 14 43 43 H 1.08993 * 109.46979 * 299.99610 * 17 15 14 44 44 H 0.97001 * 119.99770 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.08649 * 179.74287 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2436 -3.6777 0.0006 7 6 3.6278 -3.6735 0.0063 8 6 4.3234 -2.4773 0.0005 9 6 5.8304 -2.4841 0.0009 10 7 6.3183 -2.4866 1.3823 11 16 7.8985 -2.8652 1.7016 12 8 7.9975 -2.7912 3.1171 13 8 8.1107 -4.0913 1.0155 14 6 8.8496 -1.5291 0.9263 15 6 10.3435 -1.7680 1.1539 16 6 10.6328 -1.7946 2.6560 17 6 10.7462 -3.1072 0.5331 18 6 11.1337 -0.6584 0.5093 19 1 10.6209 0.1448 0.0009 20 6 12.5111 -0.6684 0.5685 21 7 13.1901 0.4175 0.2698 22 14 13.4129 -2.2247 1.0730 23 1 13.5878 -3.1018 -0.1124 24 1 14.7442 -1.8682 1.6258 25 1 12.6234 -2.9412 2.1067 26 6 3.6411 -1.2788 0.0005 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4671 -2.4928 0.0006 31 1 1.7078 -4.6154 0.0002 32 1 4.1678 -4.6089 0.0111 33 1 6.1898 -3.3757 -0.5130 34 1 6.1980 -1.5957 -0.5126 35 1 5.7158 -2.2666 2.1099 36 1 8.6439 -1.5104 -0.1439 37 1 8.5624 -0.5750 1.3682 38 1 10.2102 -2.7001 3.0914 39 1 11.7105 -1.7820 2.8188 40 1 10.1839 -0.9207 3.1280 41 1 10.5401 -3.0883 -0.5370 42 1 11.8105 -3.2777 0.6957 43 1 10.1748 -3.9100 0.9990 44 1 14.1592 0.4103 0.3111 45 1 4.1854 -0.3459 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582975779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:59 Heat of formation + Delta-G solvation = -97.306286 kcal Electronic energy + Delta-G solvation = -27275.838394 eV Core-core repulsion = 23385.169211 eV Total energy + Delta-G solvation = -3890.669183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06701 -39.45550 -38.51210 -38.16794 -36.98611 -36.38716 -34.05860 -32.90409 -32.00330 -30.34313 -28.99587 -28.15775 -27.12748 -26.66128 -24.68766 -22.78340 -21.68073 -20.58726 -20.23709 -18.91756 -18.24521 -18.08903 -17.35575 -17.11383 -16.97863 -16.70917 -16.60528 -16.03442 -15.91339 -15.51775 -15.08862 -15.02107 -14.87780 -14.76195 -14.39427 -14.21683 -14.15786 -13.90907 -13.57562 -13.25218 -13.17730 -13.07526 -13.01300 -12.95575 -12.75003 -12.67855 -12.59829 -12.54330 -12.01764 -12.01091 -11.86484 -11.81697 -11.01596 -10.78850 -10.69518 -10.59257 -10.36516 -9.97228 -9.89731 -8.35959 -6.35784 -0.71918 -0.32886 0.31572 1.29725 1.34162 1.40065 1.42648 1.86681 2.28751 2.74395 2.81992 2.98361 3.06901 3.25860 3.56412 3.73542 3.90006 4.03507 4.07192 4.11812 4.23321 4.28032 4.33762 4.38556 4.46616 4.51237 4.59353 4.68263 4.69514 4.71404 4.74495 4.83422 4.89807 4.94703 5.01211 5.14541 5.16755 5.32875 5.37546 5.43969 5.52187 5.53048 5.62074 5.90167 6.01245 6.25237 6.53876 6.67450 7.28686 8.80081 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.002705 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.935114 B =10346.980306 C =11120.499405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.391 3.609 3 O -0.510 6.510 4 C -0.194 4.194 5 C -0.053 4.053 6 C -0.131 4.131 7 C -0.074 4.074 8 C -0.117 4.117 9 C 0.144 3.856 10 N -1.110 6.110 11 S 2.620 3.380 12 O -0.986 6.986 13 O -0.979 6.979 14 C -0.587 4.587 15 C 0.045 3.955 16 C -0.176 4.176 17 C -0.187 4.187 18 C -0.505 4.505 19 H 0.048 0.952 20 C 0.024 3.976 21 N -0.937 5.937 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.306 1.306 25 H -0.220 1.220 26 C -0.064 4.064 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.422 0.578 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.266 0.734 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.261 -9.797 -1.166 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.272 3.728 3 O -0.389 6.389 4 C -0.195 4.195 5 C -0.071 4.071 6 C -0.149 4.149 7 C -0.093 4.093 8 C -0.119 4.119 9 C 0.019 3.981 10 N -0.870 5.870 11 S 2.716 3.284 12 O -0.977 6.977 13 O -0.969 6.969 14 C -0.719 4.719 15 C 0.042 3.958 16 C -0.234 4.234 17 C -0.243 4.243 18 C -0.544 4.544 19 H 0.066 0.934 20 C -0.174 4.174 21 N -0.576 5.576 22 Si 0.748 3.252 23 H -0.200 1.200 24 H -0.235 1.235 25 H -0.145 1.145 26 C -0.084 4.084 27 H 0.138 0.862 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.159 0.841 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.258 0.742 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.387 -9.988 -0.853 30.105 hybrid contribution 1.132 0.732 -0.078 1.351 sum -27.255 -9.255 -0.930 28.798 Atomic orbital electron populations 1.22294 0.90080 1.05817 1.06847 1.23248 0.93703 0.86838 0.68980 1.90562 1.73506 1.35937 1.38889 1.20706 0.94053 0.96024 1.08698 1.21879 1.01957 0.90133 0.93129 1.21557 0.93533 0.99726 1.00061 1.21721 0.95541 0.97814 0.94240 1.19711 0.94507 0.93653 1.04008 1.20459 0.91501 1.04253 0.81921 1.55463 1.28199 1.88666 1.14705 1.04587 0.73565 0.76340 0.73947 1.93536 1.85812 1.87934 1.30373 1.93514 1.84981 1.42021 1.76353 1.30423 1.08041 1.18768 1.14639 1.18207 0.89941 0.94288 0.93353 1.22702 1.02585 1.01347 0.96735 1.22844 1.01040 0.97406 1.03041 1.20944 0.91042 1.07203 1.35163 0.93400 1.25706 0.98589 0.98316 0.94823 1.70063 1.07762 1.28841 1.50932 0.86681 0.76800 0.81220 0.80481 1.20032 1.23510 1.14485 1.21431 0.94205 0.98026 0.94693 0.86236 0.90202 0.86137 0.81147 0.81965 0.84072 0.88428 0.89639 0.74222 0.83991 0.84529 0.92925 0.92459 0.91894 0.90907 0.93825 0.91514 0.92477 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 8.93 71.24 0.64 -0.61 16 2 C 0.39 6.52 7.23 28.03 0.20 6.72 16 3 O -0.51 -13.56 17.08 -2.96 -0.05 -13.61 16 4 C -0.19 -3.00 5.87 -20.15 -0.12 -3.12 16 5 C -0.05 -0.45 9.47 22.58 0.21 -0.24 16 6 C -0.13 -1.16 10.03 22.23 0.22 -0.94 16 7 C -0.07 -1.01 9.69 22.35 0.22 -0.80 16 8 C -0.12 -2.07 5.27 -19.91 -0.10 -2.17 16 9 C 0.14 2.85 6.25 85.63 0.54 3.38 16 10 N -1.11 -25.60 5.88 -190.79 -1.12 -26.72 16 11 S 2.62 82.90 4.50 -56.49 -0.25 82.65 16 12 O -0.99 -36.35 15.93 -127.65 -2.03 -38.38 16 13 O -0.98 -34.28 15.12 -127.65 -1.93 -36.21 16 14 C -0.59 -20.59 4.99 71.98 0.36 -20.23 16 15 C 0.04 1.99 0.52 -52.93 -0.03 1.96 16 16 C -0.18 -7.76 6.95 71.98 0.50 -7.26 16 17 C -0.19 -7.95 7.22 71.98 0.52 -7.43 16 18 C -0.50 -27.52 8.62 25.60 0.22 -27.30 16 19 H 0.05 2.83 7.99 -2.91 -0.02 2.80 16 20 C 0.02 1.38 5.31 84.65 0.45 1.83 16 21 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 22 Si 0.92 44.18 22.79 68.60 1.56 45.74 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.22 -9.64 4.67 99.48 0.46 -9.18 16 26 C -0.06 -1.25 9.25 22.58 0.21 -1.04 16 27 H 0.12 0.19 8.09 -2.39 -0.02 0.17 16 28 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 29 H 0.12 0.16 8.09 -2.39 -0.02 0.14 16 30 H 0.17 0.09 7.05 -2.91 -0.02 0.07 16 31 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 32 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.10 1.83 7.64 -2.38 -0.02 1.82 16 34 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 35 H 0.42 8.60 8.61 -96.75 -0.83 7.77 16 36 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 37 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 38 H 0.05 2.13 6.21 -2.39 -0.01 2.12 16 39 H 0.06 2.60 4.32 -2.39 -0.01 2.59 16 40 H 0.06 2.65 8.11 -2.39 -0.02 2.63 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.04 1.92 2.28 -2.38 -0.01 1.91 16 43 H 0.07 2.61 5.46 -2.39 -0.01 2.59 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.12 2.65 7.65 -2.91 -0.02 2.63 16 Total: -1.00 -79.03 366.26 0.45 -78.57 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.06 Total: 22.53 kcal Atomic # 6 Polarization: -61.27 SS G_CDS: 4.03 Total: -57.23 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -0.82 Total: -84.06 kcal Atomic # 8 Polarization: -84.19 SS G_CDS: -4.01 Total: -88.20 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.56 Total: 45.74 kcal Atomic # 16 Polarization: 82.90 SS G_CDS: -0.25 Total: 82.65 kcal Total: -79.03 0.45 -78.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582975779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.733 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds