Wall clock time and date at job start Tue Mar 31 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 119.99859 * 2 1 4 4 C 1.34779 * 120.00305 * 180.02562 * 2 1 3 5 5 O 1.21286 * 119.99693 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00476 * 179.97438 * 4 2 1 7 7 S 1.81391 * 109.47331 * 179.97438 * 6 4 2 8 8 C 1.81404 * 103.00111 * 179.97438 * 7 6 4 9 9 C 1.52994 * 109.47091 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46960 * 60.00262 * 9 8 7 11 11 O 1.42895 * 109.47770 * 300.00017 * 9 8 7 12 12 C 1.53005 * 109.47159 * 179.97438 * 9 8 7 13 13 O 1.42897 * 109.47198 * 185.00313 * 12 9 8 14 14 C 1.35683 * 116.99685 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81261 * 180.02562 * 14 13 12 16 16 C 1.36441 * 120.18225 * 179.72110 * 15 14 13 17 17 C 1.40834 * 119.80994 * 0.26831 * 16 15 14 18 18 C 1.41215 * 120.17646 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00196 * 204.54801 * 18 17 16 20 20 C 1.39888 * 120.00093 * 24.55741 * 18 17 16 21 21 N 1.30881 * 120.00110 * 17.92429 * 20 18 17 22 22 Si 1.86803 * 119.99833 * 197.92928 * 20 18 17 23 23 H 1.48503 * 109.47208 * 59.99802 * 22 20 18 24 24 H 1.48511 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47221 * 299.99522 * 22 20 18 26 26 C 1.40829 * 119.64178 * 0.02562 * 17 16 15 27 27 C 1.36431 * 119.81319 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47143 * 269.99773 * 1 2 3 29 29 H 1.08994 * 109.47411 * 29.99954 * 1 2 3 30 30 H 1.09000 * 109.47259 * 150.00261 * 1 2 3 31 31 H 1.09008 * 109.47162 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47235 * 299.99892 * 3 2 1 33 33 H 1.08993 * 109.47656 * 60.00504 * 3 2 1 34 34 H 1.08997 * 109.46739 * 59.99596 * 6 4 2 35 35 H 1.09002 * 109.46732 * 299.99968 * 6 4 2 36 36 H 1.09003 * 109.47005 * 59.99894 * 8 7 6 37 37 H 1.08999 * 109.47075 * 299.99836 * 8 7 6 38 38 H 0.96703 * 113.99988 * 300.00629 * 11 9 8 39 39 H 1.09005 * 109.46782 * 65.00294 * 12 9 8 40 40 H 1.09002 * 109.47300 * 305.00838 * 12 9 8 41 41 H 1.08000 * 119.91135 * 359.97438 * 15 14 13 42 42 H 1.07999 * 120.09455 * 180.29138 * 16 15 14 43 43 H 0.97005 * 119.99879 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.09144 * 180.02562 * 26 17 16 45 45 H 1.08003 * 119.90891 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 16 4.2506 -2.8774 -0.0010 8 6 6.0530 -2.6730 -0.0025 9 6 6.7223 -4.0488 -0.0019 10 1 6.4185 -4.6010 -0.8912 11 8 6.3259 -4.7709 1.1657 12 6 8.2426 -3.8764 -0.0038 13 8 8.8670 -5.1564 -0.1207 14 6 10.2235 -5.1807 -0.1372 15 6 10.8931 -6.3972 -0.2497 16 6 12.2569 -6.4300 -0.2728 17 6 12.9878 -5.2299 -0.1768 18 6 14.3995 -5.2548 -0.2004 19 1 14.9615 -4.4516 0.2529 20 6 15.0702 -6.3198 -0.8112 21 7 14.4355 -7.0975 -1.6510 22 14 16.8716 -6.6319 -0.4279 23 1 17.0303 -6.8940 1.0252 24 1 17.3444 -7.8108 -1.1975 25 1 17.6720 -5.4397 -0.8063 26 6 12.3031 -4.0051 -0.0572 27 6 10.9391 -3.9897 -0.0356 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.2691 1.0696 -0.0005 32 1 1.9341 1.8403 -0.8900 33 1 1.9342 1.8403 0.8899 34 1 4.0095 -0.6535 0.8888 35 1 4.0088 -0.6532 -0.8912 36 1 6.3569 -2.1211 0.8871 37 1 6.3554 -2.1218 -0.8929 38 1 6.5645 -4.3371 1.9964 39 1 8.5557 -3.4030 0.9268 40 1 8.5363 -3.2504 -0.8465 41 1 10.3310 -7.3165 -0.3230 42 1 12.7744 -7.3734 -0.3648 43 1 14.9005 -7.8362 -2.0742 44 1 12.8564 -3.0805 0.0165 45 1 10.4125 -3.0512 0.0556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583036106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:24 Heat of formation + Delta-G solvation = -94.762533 kcal Electronic energy + Delta-G solvation = -25297.279476 eV Core-core repulsion = 21406.720598 eV Total energy + Delta-G solvation = -3890.558878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20794 -39.07081 -37.49889 -36.06912 -36.01799 -33.33262 -31.70576 -31.14853 -29.78768 -29.05327 -28.20077 -26.84856 -26.07932 -24.64279 -22.33415 -20.73898 -20.62465 -19.98533 -17.70822 -17.45495 -17.35762 -16.81047 -16.63721 -16.42844 -16.24514 -15.54573 -15.25029 -14.86276 -14.67932 -14.27534 -14.01882 -13.98218 -13.83245 -13.23876 -13.14097 -13.05759 -12.93603 -12.71273 -12.55550 -12.43707 -12.23844 -12.14533 -11.81180 -11.46642 -11.14618 -11.06670 -10.91941 -10.65609 -10.39467 -10.16940 -10.05228 -9.97872 -9.85390 -9.35057 -9.27683 -9.03006 -7.85300 -7.65878 -7.05000 -6.73340 -4.26943 1.06008 2.10215 2.21718 2.51090 2.77874 2.93552 3.07509 3.09630 3.21405 3.80335 3.92991 3.94392 4.30504 4.43170 4.47972 4.60629 4.68464 4.70402 4.73057 4.79013 4.83004 5.03109 5.04481 5.06345 5.17218 5.28116 5.33040 5.55637 5.65540 5.83779 5.92546 6.02757 6.21143 6.70368 6.71337 6.96021 7.09556 7.17015 7.44445 7.54055 7.61810 7.62860 7.77047 7.99048 8.19146 8.43158 8.63599 8.88574 8.97196 10.21074 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.039963 B = 0.001546 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.475309 B =18102.302288 C =18568.669413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.622 5.622 3 C 0.073 3.927 4 C 0.530 3.470 5 O -0.512 6.512 6 C -0.140 4.140 7 S -0.144 6.144 8 C -0.144 4.144 9 C 0.129 3.871 10 H 0.115 0.885 11 O -0.539 6.539 12 C 0.044 3.956 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.118 4.118 16 C -0.133 4.133 17 C 0.088 3.912 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.199 4.199 27 C -0.168 4.168 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.373 0.627 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.281 0.719 44 H 0.094 0.906 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.571 16.786 2.727 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.358 5.358 3 C -0.070 4.070 4 C 0.316 3.684 5 O -0.387 6.387 6 C -0.291 4.291 7 S 0.082 5.918 8 C -0.293 4.293 9 C 0.069 3.931 10 H 0.133 0.867 11 O -0.344 6.344 12 C -0.034 4.034 13 O -0.231 6.231 14 C -0.053 4.053 15 C -0.137 4.137 16 C -0.152 4.152 17 C 0.086 3.914 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.219 4.219 27 C -0.187 4.187 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.220 0.780 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.825 14.515 2.098 26.295 hybrid contribution 1.995 2.106 0.399 2.928 sum -19.831 16.621 2.497 25.995 Atomic orbital electron populations 1.21651 0.78486 1.03371 1.02140 1.47654 1.07370 1.06101 1.74660 1.21908 0.97392 0.85239 1.02452 1.19750 0.88479 0.83645 0.76503 1.90777 1.69467 1.30537 1.47905 1.23582 0.96656 1.02007 1.06870 1.87940 1.01246 1.04635 1.97947 1.24283 0.96518 1.02471 1.05984 1.21526 0.90901 0.89627 0.91087 0.86714 1.86696 1.82311 1.50150 1.15208 1.23070 0.92089 0.87147 1.01140 1.85891 1.18671 1.27848 1.90729 1.18612 0.80017 0.94575 1.12113 1.19851 0.94370 0.94119 1.05318 1.20988 0.91289 0.99200 1.03764 1.17595 0.93528 0.90501 0.89779 1.19430 0.91436 1.05913 1.32644 0.90597 1.25877 1.00668 0.94866 0.92759 1.69825 1.38725 1.14448 1.19387 0.86383 0.82124 0.78554 0.79721 1.18871 1.20361 1.19114 1.20542 0.92634 0.97042 1.11692 1.20377 0.95358 0.94858 1.08104 0.92511 0.91032 0.90263 0.90231 0.91592 0.91607 0.87223 0.87245 0.89496 0.88749 0.78027 0.92771 0.92266 0.88363 0.85638 0.90820 0.88797 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.48 59.84 0.63 1.11 16 2 N -0.62 -4.12 3.27 -189.53 -0.62 -4.74 16 3 C 0.07 0.21 10.60 59.84 0.63 0.84 16 4 C 0.53 5.16 7.69 -10.98 -0.08 5.08 16 5 O -0.51 -7.26 15.44 5.55 0.09 -7.17 16 6 C -0.14 -1.05 4.73 36.01 0.17 -0.88 16 7 S -0.14 -1.63 20.52 -107.50 -2.21 -3.83 16 8 C -0.14 -1.32 5.64 37.15 0.21 -1.11 16 9 C 0.13 1.63 3.30 -26.73 -0.09 1.54 16 10 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 11 O -0.54 -7.46 12.90 -40.06 -0.52 -7.98 16 12 C 0.04 0.65 4.37 37.16 0.16 0.81 16 13 O -0.32 -6.42 10.09 -23.58 -0.24 -6.66 16 14 C -0.01 -0.23 6.71 -38.79 -0.26 -0.49 16 15 C -0.12 -2.87 9.92 -39.83 -0.40 -3.27 16 16 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 17 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 18 C -0.46 -12.27 9.04 -37.83 -0.34 -12.61 16 19 H 0.08 1.92 7.91 -52.48 -0.41 1.50 16 20 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 21 N -0.80 -20.64 10.96 55.54 0.61 -20.03 16 22 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 23 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.20 -4.84 9.74 -39.25 -0.38 -5.23 16 27 C -0.17 -3.73 8.96 -39.83 -0.36 -4.09 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 30 H 0.08 0.58 7.42 -51.93 -0.39 0.19 16 31 H 0.08 0.15 5.77 -51.92 -0.30 -0.15 16 32 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.11 0.57 7.79 -51.92 -0.40 0.17 16 35 H 0.11 0.58 7.79 -51.92 -0.40 0.17 16 36 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.37 3.80 9.05 45.56 0.41 4.21 16 39 H 0.05 0.74 7.63 -51.93 -0.40 0.34 16 40 H 0.06 0.82 7.66 -51.93 -0.40 0.43 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.09 1.72 6.27 -52.48 -0.33 1.39 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -33.75 389.41 -9.06 -42.81 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.88 Total: 6.73 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.13 Total: -18.56 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: -0.01 Total: -24.77 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.67 Total: -21.82 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.75 -9.06 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583036106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.957 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds