Wall clock time and date at job start Tue Mar 31 2020 23:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 119.99859 * 2 1 4 4 C 1.34779 * 120.00305 * 180.02562 * 2 1 3 5 5 O 1.21286 * 119.99693 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00476 * 179.97438 * 4 2 1 7 7 S 1.81391 * 109.47331 * 179.97438 * 6 4 2 8 8 C 1.81404 * 103.00111 * 179.97438 * 7 6 4 9 9 C 1.52994 * 109.47091 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46960 * 60.00262 * 9 8 7 11 11 O 1.42895 * 109.47770 * 300.00017 * 9 8 7 12 12 C 1.53005 * 109.47159 * 179.97438 * 9 8 7 13 13 O 1.42897 * 109.47198 * 185.00313 * 12 9 8 14 14 C 1.35683 * 116.99685 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81261 * 180.02562 * 14 13 12 16 16 C 1.36441 * 120.18225 * 179.72110 * 15 14 13 17 17 C 1.40834 * 119.80994 * 0.26831 * 16 15 14 18 18 C 1.41215 * 120.17646 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00196 * 204.54801 * 18 17 16 20 20 C 1.39888 * 120.00093 * 24.55741 * 18 17 16 21 21 N 1.30881 * 120.00110 * 17.92429 * 20 18 17 22 22 Si 1.86803 * 119.99833 * 197.92928 * 20 18 17 23 23 H 1.48503 * 109.47208 * 59.99802 * 22 20 18 24 24 H 1.48511 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47221 * 299.99522 * 22 20 18 26 26 C 1.40829 * 119.64178 * 0.02562 * 17 16 15 27 27 C 1.36431 * 119.81319 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47143 * 269.99773 * 1 2 3 29 29 H 1.08994 * 109.47411 * 29.99954 * 1 2 3 30 30 H 1.09000 * 109.47259 * 150.00261 * 1 2 3 31 31 H 1.09008 * 109.47162 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47235 * 299.99892 * 3 2 1 33 33 H 1.08993 * 109.47656 * 60.00504 * 3 2 1 34 34 H 1.08997 * 109.46739 * 59.99596 * 6 4 2 35 35 H 1.09002 * 109.46732 * 299.99968 * 6 4 2 36 36 H 1.09003 * 109.47005 * 59.99894 * 8 7 6 37 37 H 1.08999 * 109.47075 * 299.99836 * 8 7 6 38 38 H 0.96703 * 113.99988 * 300.00629 * 11 9 8 39 39 H 1.09005 * 109.46782 * 65.00294 * 12 9 8 40 40 H 1.09002 * 109.47300 * 305.00838 * 12 9 8 41 41 H 1.08000 * 119.91135 * 359.97438 * 15 14 13 42 42 H 1.07999 * 120.09455 * 180.29138 * 16 15 14 43 43 H 0.97005 * 119.99879 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.09144 * 180.02562 * 26 17 16 45 45 H 1.08003 * 119.90891 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 16 4.2506 -2.8774 -0.0010 8 6 6.0530 -2.6730 -0.0025 9 6 6.7223 -4.0488 -0.0019 10 1 6.4185 -4.6010 -0.8912 11 8 6.3259 -4.7709 1.1657 12 6 8.2426 -3.8764 -0.0038 13 8 8.8670 -5.1564 -0.1207 14 6 10.2235 -5.1807 -0.1372 15 6 10.8931 -6.3972 -0.2497 16 6 12.2569 -6.4300 -0.2728 17 6 12.9878 -5.2299 -0.1768 18 6 14.3995 -5.2548 -0.2004 19 1 14.9615 -4.4516 0.2529 20 6 15.0702 -6.3198 -0.8112 21 7 14.4355 -7.0975 -1.6510 22 14 16.8716 -6.6319 -0.4279 23 1 17.0303 -6.8940 1.0252 24 1 17.3444 -7.8108 -1.1975 25 1 17.6720 -5.4397 -0.8063 26 6 12.3031 -4.0051 -0.0572 27 6 10.9391 -3.9897 -0.0356 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.2691 1.0696 -0.0005 32 1 1.9341 1.8403 -0.8900 33 1 1.9342 1.8403 0.8899 34 1 4.0095 -0.6535 0.8888 35 1 4.0088 -0.6532 -0.8912 36 1 6.3569 -2.1211 0.8871 37 1 6.3554 -2.1218 -0.8929 38 1 6.5645 -4.3371 1.9964 39 1 8.5557 -3.4030 0.9268 40 1 8.5363 -3.2504 -0.8465 41 1 10.3310 -7.3165 -0.3230 42 1 12.7744 -7.3734 -0.3648 43 1 14.9005 -7.8362 -2.0742 44 1 12.8564 -3.0805 0.0165 45 1 10.4125 -3.0512 0.0556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583036106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:23 Heat of formation + Delta-G solvation = -117.561490 kcal Electronic energy + Delta-G solvation = -25298.268113 eV Core-core repulsion = 21406.720598 eV Total energy + Delta-G solvation = -3891.547514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85948 -40.63373 -38.86172 -37.58038 -36.64373 -35.17372 -32.71215 -31.77651 -31.55877 -30.89359 -28.57099 -28.01347 -26.61807 -26.37865 -23.59794 -22.51169 -22.24174 -20.57830 -19.24941 -18.85962 -18.21928 -17.94925 -17.49911 -17.26811 -17.08963 -17.00175 -16.31353 -16.06160 -15.73442 -15.70088 -15.25748 -14.95481 -14.73868 -14.58381 -14.06862 -13.92801 -13.85023 -13.57246 -13.49758 -13.42413 -13.39525 -13.19241 -13.04416 -12.87920 -12.77666 -12.61644 -12.36516 -12.14084 -11.71137 -11.58183 -11.28891 -11.12613 -11.04341 -10.86353 -10.80642 -9.78577 -9.54982 -8.91744 -8.67095 -8.58571 -6.21864 0.35520 0.96510 1.04036 1.40425 1.44173 1.51362 1.53768 1.55525 2.02002 2.23343 2.53106 2.73970 3.41429 3.44118 3.71372 3.79193 3.90595 3.94824 4.02211 4.14195 4.22972 4.29870 4.30043 4.37186 4.40105 4.45931 4.49272 4.56219 4.73917 4.86151 4.88823 4.91952 4.93800 5.07964 5.22867 5.29089 5.40325 5.60184 5.65237 5.89153 6.06807 6.18957 6.27329 6.57430 6.78219 6.83616 6.96077 6.99775 7.11495 8.37706 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.039963 B = 0.001546 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.475309 B =18102.302288 C =18568.669413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.618 5.618 3 C 0.065 3.935 4 C 0.518 3.482 5 O -0.572 6.572 6 C -0.118 4.118 7 S -0.228 6.228 8 C -0.118 4.118 9 C 0.135 3.865 10 H 0.094 0.906 11 O -0.563 6.563 12 C 0.036 3.964 13 O -0.333 6.333 14 C 0.000 4.000 15 C -0.136 4.136 16 C -0.153 4.153 17 C 0.054 3.946 18 C -0.500 4.500 19 H 0.078 0.922 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.981 3.019 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.258 1.258 26 C -0.206 4.206 27 C -0.163 4.163 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.387 0.613 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.108 0.892 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.441 20.188 3.187 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.352 5.352 3 C -0.076 4.076 4 C 0.305 3.695 5 O -0.451 6.451 6 C -0.268 4.268 7 S -0.002 6.002 8 C -0.266 4.266 9 C 0.074 3.926 10 H 0.112 0.888 11 O -0.369 6.369 12 C -0.041 4.041 13 O -0.249 6.249 14 C -0.043 4.043 15 C -0.155 4.155 16 C -0.173 4.173 17 C 0.051 3.949 18 C -0.530 4.530 19 H 0.096 0.904 20 C -0.181 4.181 21 N -0.459 5.459 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.182 1.182 26 C -0.226 4.226 27 C -0.181 4.181 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.236 0.764 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.715 17.986 2.566 28.313 hybrid contribution 1.700 1.184 0.266 2.089 sum -20.015 19.170 2.833 27.859 Atomic orbital electron populations 1.21742 0.78291 1.03610 1.02437 1.47838 1.07876 1.06621 1.72816 1.22209 0.97905 0.83569 1.03944 1.20245 0.89545 0.83686 0.75976 1.90754 1.70685 1.32724 1.50932 1.23550 0.94833 0.98863 1.09572 1.88317 1.04037 1.09554 1.98255 1.24071 0.93899 1.00355 1.08324 1.21422 0.89685 0.91385 0.90103 0.88773 1.86666 1.82553 1.51394 1.16335 1.23461 0.92871 0.85073 1.02735 1.85882 1.17063 1.31549 1.90410 1.18674 0.81462 0.94191 1.10010 1.20008 0.94084 0.95514 1.05873 1.20888 0.92084 0.98696 1.05609 1.17963 0.94275 0.91530 0.91086 1.19701 0.91887 1.07244 1.34122 0.90419 1.26739 1.05253 0.94111 0.91947 1.69892 1.40730 1.15059 1.20204 0.85266 0.76297 0.78758 0.79453 1.18588 1.19478 1.18241 1.20815 0.93815 0.96779 1.11186 1.20712 0.94666 0.96323 1.06443 0.92228 0.88059 0.92707 0.88748 0.90047 0.90157 0.84274 0.84414 0.86792 0.86623 0.76351 0.90732 0.90667 0.87865 0.87430 0.90256 0.87382 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.48 127.77 1.34 2.16 16 2 N -0.62 -6.94 3.27 -871.92 -2.85 -9.79 16 3 C 0.07 0.13 10.60 127.77 1.35 1.48 16 4 C 0.52 9.52 7.69 87.66 0.67 10.19 16 5 O -0.57 -16.73 15.44 -3.05 -0.05 -16.78 16 6 C -0.12 -1.42 4.73 71.24 0.34 -1.09 16 7 S -0.23 -4.87 20.52 -56.49 -1.16 -6.03 16 8 C -0.12 -1.78 5.64 71.98 0.41 -1.38 16 9 C 0.13 3.13 3.30 30.59 0.10 3.23 16 10 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 11 O -0.56 -14.95 12.90 -144.36 -1.86 -16.81 16 12 C 0.04 0.95 4.37 71.98 0.31 1.26 16 13 O -0.33 -13.05 10.09 -85.39 -0.86 -13.91 16 14 C 0.00 0.02 6.71 22.79 0.15 0.18 16 15 C -0.14 -6.76 9.92 22.11 0.22 -6.54 16 16 C -0.15 -8.30 8.64 22.49 0.19 -8.11 16 17 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 18 C -0.50 -26.93 9.04 23.40 0.21 -26.71 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.70 5.13 85.23 0.44 2.13 16 21 N -0.83 -44.24 10.96 21.82 0.24 -44.00 16 22 Si 0.98 38.34 29.60 68.60 2.03 40.37 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 26 C -0.21 -9.86 9.74 22.48 0.22 -9.64 16 27 C -0.16 -6.86 8.96 22.11 0.20 -6.66 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.39 8.07 -2.39 -0.02 0.37 16 30 H 0.05 0.83 7.42 -2.39 -0.02 0.82 16 31 H 0.09 -0.08 5.77 -2.38 -0.01 -0.10 16 32 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.14 0.86 7.79 -2.39 -0.02 0.84 16 35 H 0.14 0.89 7.79 -2.39 -0.02 0.87 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.39 7.21 9.05 -74.06 -0.67 6.54 16 39 H 0.07 1.70 7.63 -2.38 -0.02 1.68 16 40 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 41 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 42 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 43 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 44 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.13 4.42 6.27 -2.91 -0.02 4.40 16 Total: -1.00 -77.89 389.41 1.86 -76.03 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.33 Total: 27.61 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 6.04 Total: -36.69 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -2.62 Total: -53.79 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -2.77 Total: -47.50 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -1.16 Total: -6.03 kcal Total: -77.89 1.86 -76.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583036106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.527 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds