Wall clock time and date at job start Tue Mar 31 2020 23:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99968 * 2 1 4 4 C 1.34783 * 120.00074 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99910 * 0.02562 * 4 2 1 6 6 C 1.50705 * 119.99744 * 180.02562 * 4 2 1 7 7 S 1.81401 * 109.46717 * 180.02562 * 6 4 2 8 8 C 1.81403 * 102.99682 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.46819 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46985 * 305.00301 * 9 8 7 11 11 O 1.42900 * 109.47007 * 65.00136 * 9 8 7 12 12 C 1.52999 * 109.47031 * 185.00089 * 9 8 7 13 13 O 1.42897 * 109.47433 * 175.00071 * 12 9 8 14 14 C 1.35669 * 117.00243 * 179.97438 * 13 12 9 15 15 C 1.39311 * 119.81866 * 359.72733 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.75745 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48501 * 109.47005 * 90.00069 * 22 20 18 24 24 H 1.48502 * 109.47551 * 210.00116 * 22 20 18 25 25 H 1.48500 * 109.47275 * 330.00023 * 22 20 18 26 26 C 1.40828 * 119.64080 * 359.73527 * 17 16 15 27 27 C 1.36439 * 119.81623 * 0.02562 * 26 17 16 28 28 H 1.08997 * 109.46834 * 240.00021 * 1 2 3 29 29 H 1.08997 * 109.46952 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46682 * 120.00456 * 1 2 3 31 31 H 1.09006 * 109.46547 * 269.99465 * 3 2 1 32 32 H 1.08993 * 109.47277 * 29.99381 * 3 2 1 33 33 H 1.09000 * 109.47032 * 149.99935 * 3 2 1 34 34 H 1.09001 * 109.46891 * 60.00399 * 6 4 2 35 35 H 1.08994 * 109.47218 * 300.00194 * 6 4 2 36 36 H 1.09000 * 109.47354 * 60.00484 * 8 7 6 37 37 H 1.09004 * 109.47062 * 299.99761 * 8 7 6 38 38 H 0.96693 * 114.00269 * 60.00236 * 11 9 8 39 39 H 1.09003 * 109.47247 * 54.99860 * 12 9 8 40 40 H 1.09009 * 109.47007 * 295.00024 * 12 9 8 41 41 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 42 42 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 43 43 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.09419 * 179.97438 * 26 17 16 45 45 H 1.07990 * 119.91036 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6460 -1.1672 0.0011 7 16 4.2506 -2.8774 0.0010 8 6 6.0531 -2.6729 0.0025 9 6 6.7224 -4.0488 0.0019 10 1 6.3506 -4.6340 0.8429 11 8 6.4197 -4.7252 -1.2200 12 6 8.2376 -3.8788 0.1289 13 8 8.8529 -5.1633 0.2454 14 6 10.2039 -5.1903 0.3667 15 6 10.9234 -3.9974 0.3674 16 6 12.2818 -4.0157 0.4939 17 6 12.9574 -5.2456 0.6131 18 6 14.3637 -5.2738 0.7385 19 1 14.8879 -4.4164 1.1340 20 6 15.0779 -6.4124 0.3505 21 7 14.5210 -7.2973 -0.4369 22 14 16.8261 -6.6698 0.9560 23 1 16.8010 -7.4253 2.2342 24 1 17.5931 -7.4375 -0.0578 25 1 17.4740 -5.3514 1.1728 26 6 12.2230 -6.4472 0.6063 27 6 10.8646 -6.4113 0.4839 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3792 1.5833 -1.0278 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 4.0089 -0.6532 0.8912 35 1 4.0096 -0.6535 -0.8888 36 1 6.3555 -2.1218 0.8930 37 1 6.3569 -2.1211 -0.8871 38 1 6.7221 -4.2605 -2.0122 39 1 8.4637 -3.2859 1.0152 40 1 8.6217 -3.3709 -0.7558 41 1 10.4041 -3.0553 0.2718 42 1 12.8378 -3.0898 0.4983 43 1 15.0160 -8.0869 -0.7057 44 1 12.7337 -7.3946 0.6969 45 1 10.2999 -7.3318 0.4781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583036107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:28 Heat of formation + Delta-G solvation = -95.899270 kcal Electronic energy + Delta-G solvation = -25292.579641 eV Core-core repulsion = 21401.971470 eV Total energy + Delta-G solvation = -3890.608170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18522 -39.07166 -37.49747 -36.07460 -36.02239 -33.33106 -31.69728 -31.10435 -29.78701 -29.05283 -28.22614 -26.84948 -26.09259 -24.64283 -22.33584 -20.74008 -20.62449 -20.00251 -17.66973 -17.42324 -17.35345 -16.79953 -16.66217 -16.43339 -16.25092 -15.54273 -15.24796 -14.86139 -14.61500 -14.23003 -14.00911 -13.97623 -13.83141 -13.34273 -13.28179 -13.05137 -12.90111 -12.68517 -12.52897 -12.46013 -12.24376 -12.14460 -11.82460 -11.41800 -11.19560 -11.11246 -10.87183 -10.63895 -10.39255 -10.16065 -10.06709 -9.98235 -9.83441 -9.34850 -9.26647 -9.03794 -7.85469 -7.65887 -7.05000 -6.73287 -4.26934 1.06642 2.11362 2.21791 2.51400 2.76689 2.93529 3.08227 3.11272 3.20519 3.80048 3.93517 3.94599 4.29814 4.38641 4.51114 4.60519 4.69294 4.71879 4.72038 4.75852 4.82852 5.01962 5.04451 5.07994 5.17314 5.28628 5.30800 5.54814 5.65507 5.84715 5.92752 6.02817 6.21188 6.70405 6.71387 6.96065 7.09604 7.17173 7.44501 7.54127 7.62566 7.63277 7.77014 7.99385 8.19140 8.43275 8.63844 8.88709 8.97212 10.21173 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.040556 B = 0.001547 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.229689 B =18090.208330 C =18600.118310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.623 5.623 3 C 0.075 3.925 4 C 0.530 3.470 5 O -0.511 6.511 6 C -0.138 4.138 7 S -0.148 6.148 8 C -0.142 4.142 9 C 0.130 3.870 10 H 0.115 0.885 11 O -0.540 6.540 12 C 0.044 3.956 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.168 4.168 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.133 4.133 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.373 0.627 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.280 0.720 44 H 0.126 0.874 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.725 17.263 0.030 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C -0.068 4.068 4 C 0.316 3.684 5 O -0.386 6.386 6 C -0.289 4.289 7 S 0.079 5.921 8 C -0.291 4.291 9 C 0.069 3.931 10 H 0.133 0.867 11 O -0.344 6.344 12 C -0.034 4.034 13 O -0.231 6.231 14 C -0.053 4.053 15 C -0.187 4.187 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.494 4.494 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.152 4.152 27 C -0.137 4.137 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.144 0.856 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.999 14.962 0.300 26.607 hybrid contribution 2.003 2.091 -0.190 2.902 sum -19.996 17.053 0.110 26.281 Atomic orbital electron populations 1.21652 0.78427 1.02401 1.02723 1.47691 1.07323 1.06119 1.74718 1.21912 0.97478 0.85158 1.02271 1.19717 0.88469 0.83578 0.76667 1.90778 1.69521 1.30537 1.47750 1.23571 0.96603 1.01860 1.06874 1.87913 1.01354 1.04895 1.97950 1.24276 0.96461 1.02430 1.05967 1.21524 0.91665 0.90296 0.89644 0.86711 1.86694 1.82329 1.50538 1.14855 1.23072 0.92197 0.87034 1.01140 1.85887 1.19337 1.27501 1.90413 1.18616 0.80272 0.94395 1.12016 1.20379 0.95426 0.94792 1.08110 1.20543 0.92929 0.97355 1.11051 1.17603 0.93509 0.90670 0.89652 1.19469 0.91731 1.00309 1.37887 0.90547 1.25880 1.00524 0.95122 0.92677 1.69837 1.38764 1.09600 1.24176 0.86322 0.81680 0.79354 0.79395 1.19306 1.20370 1.18732 1.20990 0.91129 0.99418 1.03698 1.19853 0.94476 0.93992 1.05341 0.91874 0.90491 0.91869 0.92160 0.90557 0.90838 0.87266 0.87253 0.88777 0.89446 0.78004 0.92275 0.92742 0.89005 0.88789 0.90879 0.85636 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.16 59.85 0.61 1.10 16 2 N -0.62 -4.10 3.27 -189.51 -0.62 -4.72 16 3 C 0.08 0.21 10.21 59.85 0.61 0.82 16 4 C 0.53 5.19 7.69 -10.98 -0.08 5.10 16 5 O -0.51 -7.31 15.86 5.56 0.09 -7.22 16 6 C -0.14 -1.04 4.98 36.01 0.18 -0.86 16 7 S -0.15 -1.68 20.66 -107.50 -2.22 -3.90 16 8 C -0.14 -1.32 5.60 37.16 0.21 -1.11 16 9 C 0.13 1.64 3.24 -26.73 -0.09 1.55 16 10 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 11 O -0.54 -7.56 13.06 -40.08 -0.52 -8.08 16 12 C 0.04 0.65 4.36 37.16 0.16 0.81 16 13 O -0.32 -6.43 10.09 -23.56 -0.24 -6.67 16 14 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 15 C -0.17 -3.74 8.96 -39.83 -0.36 -4.09 16 16 C -0.20 -4.84 9.74 -39.25 -0.38 -5.22 16 17 C 0.09 2.34 5.57 -106.81 -0.60 1.75 16 18 C -0.46 -12.27 9.04 -37.83 -0.34 -12.61 16 19 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.66 10.96 55.54 0.61 -20.06 16 22 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 27 C -0.12 -2.88 9.92 -39.83 -0.40 -3.27 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.19 7.79 -51.93 -0.40 -0.21 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.08 0.09 7.92 -51.93 -0.41 -0.32 16 33 H 0.07 0.14 6.44 -51.93 -0.33 -0.20 16 34 H 0.11 0.58 7.40 -51.92 -0.38 0.19 16 35 H 0.11 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.37 3.85 9.04 45.56 0.41 4.27 16 39 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 40 H 0.05 0.75 7.63 -51.92 -0.40 0.36 16 41 H 0.09 1.72 6.27 -52.49 -0.33 1.39 16 42 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.13 3.36 6.16 -52.48 -0.32 3.04 16 45 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -33.95 390.40 -9.14 -43.09 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.92 Total: 6.61 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.16 Total: -18.54 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: -0.01 Total: -24.77 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.67 Total: -21.97 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.22 Total: -3.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.95 -9.14 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583036107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.812 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds