Wall clock time and date at job start Tue Mar 31 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99968 * 2 1 4 4 C 1.34783 * 120.00074 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99910 * 0.02562 * 4 2 1 6 6 C 1.50705 * 119.99744 * 180.02562 * 4 2 1 7 7 S 1.81401 * 109.46717 * 180.02562 * 6 4 2 8 8 C 1.81403 * 102.99682 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.46819 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46985 * 305.00301 * 9 8 7 11 11 O 1.42900 * 109.47007 * 65.00136 * 9 8 7 12 12 C 1.52999 * 109.47031 * 185.00089 * 9 8 7 13 13 O 1.42897 * 109.47433 * 175.00071 * 12 9 8 14 14 C 1.35669 * 117.00243 * 179.97438 * 13 12 9 15 15 C 1.39311 * 119.81866 * 359.72733 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.75745 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48501 * 109.47005 * 90.00069 * 22 20 18 24 24 H 1.48502 * 109.47551 * 210.00116 * 22 20 18 25 25 H 1.48500 * 109.47275 * 330.00023 * 22 20 18 26 26 C 1.40828 * 119.64080 * 359.73527 * 17 16 15 27 27 C 1.36439 * 119.81623 * 0.02562 * 26 17 16 28 28 H 1.08997 * 109.46834 * 240.00021 * 1 2 3 29 29 H 1.08997 * 109.46952 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46682 * 120.00456 * 1 2 3 31 31 H 1.09006 * 109.46547 * 269.99465 * 3 2 1 32 32 H 1.08993 * 109.47277 * 29.99381 * 3 2 1 33 33 H 1.09000 * 109.47032 * 149.99935 * 3 2 1 34 34 H 1.09001 * 109.46891 * 60.00399 * 6 4 2 35 35 H 1.08994 * 109.47218 * 300.00194 * 6 4 2 36 36 H 1.09000 * 109.47354 * 60.00484 * 8 7 6 37 37 H 1.09004 * 109.47062 * 299.99761 * 8 7 6 38 38 H 0.96693 * 114.00269 * 60.00236 * 11 9 8 39 39 H 1.09003 * 109.47247 * 54.99860 * 12 9 8 40 40 H 1.09009 * 109.47007 * 295.00024 * 12 9 8 41 41 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 42 42 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 43 43 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.09419 * 179.97438 * 26 17 16 45 45 H 1.07990 * 119.91036 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6460 -1.1672 0.0011 7 16 4.2506 -2.8774 0.0010 8 6 6.0531 -2.6729 0.0025 9 6 6.7224 -4.0488 0.0019 10 1 6.3506 -4.6340 0.8429 11 8 6.4197 -4.7252 -1.2200 12 6 8.2376 -3.8788 0.1289 13 8 8.8529 -5.1633 0.2454 14 6 10.2039 -5.1903 0.3667 15 6 10.9234 -3.9974 0.3674 16 6 12.2818 -4.0157 0.4939 17 6 12.9574 -5.2456 0.6131 18 6 14.3637 -5.2738 0.7385 19 1 14.8879 -4.4164 1.1340 20 6 15.0779 -6.4124 0.3505 21 7 14.5210 -7.2973 -0.4369 22 14 16.8261 -6.6698 0.9560 23 1 16.8010 -7.4253 2.2342 24 1 17.5931 -7.4375 -0.0578 25 1 17.4740 -5.3514 1.1728 26 6 12.2230 -6.4472 0.6063 27 6 10.8646 -6.4113 0.4839 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3792 1.5833 -1.0278 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 4.0089 -0.6532 0.8912 35 1 4.0096 -0.6535 -0.8888 36 1 6.3555 -2.1218 0.8930 37 1 6.3569 -2.1211 -0.8871 38 1 6.7221 -4.2605 -2.0122 39 1 8.4637 -3.2859 1.0152 40 1 8.6217 -3.3709 -0.7558 41 1 10.4041 -3.0553 0.2718 42 1 12.8378 -3.0898 0.4983 43 1 15.0160 -8.0869 -0.7057 44 1 12.7337 -7.3946 0.6969 45 1 10.2999 -7.3318 0.4781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583036107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:27 Heat of formation + Delta-G solvation = -118.946172 kcal Electronic energy + Delta-G solvation = -25293.579029 eV Core-core repulsion = 21401.971470 eV Total energy + Delta-G solvation = -3891.607559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84074 -40.63686 -38.86585 -37.58504 -36.65302 -35.17448 -32.71615 -31.74019 -31.55405 -30.89489 -28.58685 -28.01746 -26.62686 -26.38213 -23.60257 -22.51443 -22.24546 -20.59742 -19.25206 -18.86276 -18.15632 -17.94077 -17.51324 -17.26114 -17.12704 -17.00068 -16.32039 -16.06938 -15.72644 -15.68920 -15.25989 -14.89116 -14.72387 -14.57637 -14.07849 -13.95104 -13.83357 -13.61321 -13.54853 -13.52686 -13.40542 -13.21815 -12.99899 -12.81100 -12.78586 -12.62713 -12.39991 -12.10186 -11.70592 -11.58099 -11.29175 -11.12872 -11.03940 -10.87368 -10.83141 -9.78265 -9.55104 -8.91915 -8.68081 -8.58737 -6.22061 0.35601 0.95702 1.03856 1.40501 1.44561 1.53280 1.53469 1.53599 2.02459 2.23326 2.52577 2.73734 3.41388 3.43826 3.71105 3.79241 3.91835 3.93202 3.99770 4.16324 4.22695 4.29957 4.31504 4.37083 4.39596 4.45686 4.46590 4.55260 4.73973 4.85880 4.87685 4.92856 4.93777 5.07892 5.22750 5.29178 5.42118 5.60062 5.65133 5.89004 6.06882 6.19133 6.27161 6.57425 6.77686 6.83403 6.96026 7.00043 7.11342 8.37747 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.040556 B = 0.001547 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.229689 B =18090.208330 C =18600.118310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.618 5.618 3 C 0.066 3.934 4 C 0.517 3.483 5 O -0.572 6.572 6 C -0.115 4.115 7 S -0.232 6.232 8 C -0.117 4.117 9 C 0.135 3.865 10 H 0.095 0.905 11 O -0.564 6.564 12 C 0.036 3.964 13 O -0.333 6.333 14 C 0.001 3.999 15 C -0.163 4.163 16 C -0.206 4.206 17 C 0.053 3.947 18 C -0.499 4.499 19 H 0.077 0.923 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.153 4.153 27 C -0.136 4.136 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.387 0.613 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.108 0.892 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.621 20.748 0.092 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.351 5.351 3 C -0.075 4.075 4 C 0.305 3.695 5 O -0.451 6.451 6 C -0.266 4.266 7 S -0.006 6.006 8 C -0.265 4.265 9 C 0.074 3.926 10 H 0.113 0.887 11 O -0.371 6.371 12 C -0.041 4.041 13 O -0.249 6.249 14 C -0.043 4.043 15 C -0.182 4.182 16 C -0.225 4.225 17 C 0.051 3.949 18 C -0.529 4.529 19 H 0.096 0.904 20 C -0.181 4.181 21 N -0.459 5.459 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.173 4.173 27 C -0.155 4.155 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.237 0.763 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.914 18.518 0.352 28.692 hybrid contribution 1.723 1.140 -0.247 2.080 sum -20.191 19.657 0.105 28.180 Atomic orbital electron populations 1.21755 0.78198 1.04255 1.01450 1.47870 1.07848 1.06642 1.72782 1.22229 0.98082 0.83578 1.03654 1.20219 0.89535 0.83654 0.76124 1.90753 1.70754 1.32765 1.50815 1.23534 0.94804 0.98687 1.09546 1.88292 1.04197 1.09830 1.98258 1.24066 0.93802 1.00319 1.08325 1.21428 0.90437 0.92045 0.88679 0.88715 1.86663 1.82625 1.51839 1.15953 1.23463 0.92981 0.84957 1.02736 1.85878 1.17736 1.31224 1.90069 1.18677 0.81687 0.94022 1.09922 1.20715 0.94715 0.96281 1.06442 1.20815 0.94106 0.97083 1.10544 1.17967 0.94239 0.91720 0.90946 1.19726 0.92193 1.01446 1.39517 0.90445 1.26741 1.04813 0.94355 0.92168 1.69901 1.40688 1.10241 1.25088 0.85204 0.76233 0.79443 0.78823 1.18896 1.19481 1.18035 1.20888 0.91925 0.98903 1.05545 1.20009 0.94191 0.95390 1.05897 0.93185 0.86970 0.93255 0.90873 0.88612 0.89415 0.84356 0.84441 0.86502 0.86845 0.76341 0.90406 0.90937 0.84792 0.87377 0.90270 0.87438 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.16 127.77 1.30 2.15 16 2 N -0.62 -6.88 3.27 -871.88 -2.85 -9.74 16 3 C 0.07 0.11 10.21 127.77 1.30 1.41 16 4 C 0.52 9.58 7.69 87.66 0.67 10.25 16 5 O -0.57 -16.87 15.86 -3.02 -0.05 -16.92 16 6 C -0.12 -1.42 4.98 71.24 0.35 -1.06 16 7 S -0.23 -5.01 20.66 -56.49 -1.17 -6.18 16 8 C -0.12 -1.77 5.60 71.98 0.40 -1.37 16 9 C 0.13 3.15 3.24 30.60 0.10 3.25 16 10 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 11 O -0.56 -15.17 13.06 -144.35 -1.88 -17.06 16 12 C 0.04 0.95 4.36 71.98 0.31 1.27 16 13 O -0.33 -13.07 10.09 -85.23 -0.86 -13.93 16 14 C 0.00 0.04 6.71 22.79 0.15 0.19 16 15 C -0.16 -6.87 8.96 22.11 0.20 -6.67 16 16 C -0.21 -9.83 9.74 22.48 0.22 -9.62 16 17 C 0.05 2.90 5.57 -21.28 -0.12 2.78 16 18 C -0.50 -26.90 9.04 23.40 0.21 -26.69 16 19 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.68 5.13 85.23 0.44 2.12 16 21 N -0.83 -44.30 10.96 21.82 0.24 -44.06 16 22 Si 0.98 38.42 29.60 68.60 2.03 40.45 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 C -0.15 -8.29 8.64 22.48 0.19 -8.10 16 27 C -0.14 -6.77 9.92 22.11 0.22 -6.55 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.27 7.79 -2.39 -0.02 0.25 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.10 -0.17 7.92 -2.39 -0.02 -0.18 16 33 H 0.09 -0.08 6.44 -2.39 -0.02 -0.09 16 34 H 0.14 0.89 7.40 -2.39 -0.02 0.87 16 35 H 0.14 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.39 7.35 9.04 -74.06 -0.67 6.68 16 39 H 0.08 1.80 7.66 -2.39 -0.02 1.79 16 40 H 0.07 1.69 7.63 -2.38 -0.02 1.67 16 41 H 0.13 4.43 6.27 -2.91 -0.02 4.41 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 44 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 45 H 0.10 4.86 8.06 -2.92 -0.02 4.84 16 Total: -1.00 -78.44 390.40 1.75 -76.69 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.33 Total: 27.38 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 5.96 Total: -36.64 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -2.62 Total: -53.80 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.79 Total: -47.90 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.17 Total: -6.18 kcal Total: -78.44 1.75 -76.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583036107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.257 kcal (2) G-P(sol) polarization free energy of solvation -78.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds