Wall clock time and date at job start Tue Mar 31 2020 22:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46787 * 2 1 4 4 C 1.50696 * 109.47161 * 119.99613 * 2 1 3 5 5 H 1.08005 * 119.99719 * 120.00156 * 4 2 1 6 6 C 1.37868 * 120.00557 * 300.00272 * 4 2 1 7 7 N 1.31519 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00548 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46642 * 59.99816 * 8 6 4 10 10 H 1.48497 * 109.47535 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46972 * 300.00353 * 8 6 4 12 12 N 1.46495 * 109.47493 * 240.00144 * 2 1 3 13 13 C 1.46506 * 119.99859 * 300.00317 * 12 2 1 14 14 C 1.34779 * 120.00633 * 119.99338 * 12 2 1 15 15 O 1.21287 * 119.99642 * 355.15101 * 14 12 2 16 16 C 1.50690 * 120.00603 * 175.14579 * 14 12 2 17 17 H 1.09003 * 109.46774 * 332.44711 * 16 14 12 18 18 C 1.52998 * 109.47243 * 212.44928 * 16 14 12 19 19 S 1.81396 * 109.47238 * 66.26698 * 18 16 14 20 20 C 1.81402 * 101.92187 * 182.53777 * 19 18 16 21 21 O 1.42098 * 108.58050 * 297.02537 * 19 18 16 22 22 O 1.42101 * 108.58121 * 68.05421 * 19 18 16 23 23 C 1.50704 * 109.47359 * 92.44514 * 16 14 12 24 24 C 1.38234 * 119.99605 * 59.73057 * 23 16 14 25 25 C 1.38234 * 119.99555 * 179.78993 * 24 23 16 26 26 C 1.38237 * 120.00346 * 0.43972 * 25 24 23 27 27 C 1.38234 * 119.99772 * 359.81264 * 26 25 24 28 28 C 1.38236 * 119.99814 * 240.00510 * 23 16 14 29 29 H 1.09004 * 109.46787 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47040 * 60.00138 * 1 2 3 31 31 H 1.09001 * 109.47175 * 300.00037 * 1 2 3 32 32 H 0.96997 * 120.00273 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47688 * 95.74143 * 13 12 2 34 34 H 1.09001 * 109.46815 * 215.74690 * 13 12 2 35 35 H 1.09004 * 109.46774 * 335.73789 * 13 12 2 36 36 H 1.09007 * 109.46792 * 186.26652 * 18 16 14 37 37 H 1.08997 * 109.47179 * 306.26547 * 18 16 14 38 38 H 1.08995 * 109.46750 * 60.00257 * 20 19 18 39 39 H 1.09004 * 109.46981 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47518 * 299.99955 * 20 19 18 41 41 H 1.07997 * 120.00181 * 359.97438 * 24 23 16 42 42 H 1.08004 * 119.99707 * 180.27111 * 25 24 23 43 43 H 1.07992 * 119.99960 * 179.83295 * 26 25 24 44 44 H 1.07996 * 120.00328 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.00396 * 359.97415 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.8065 -1.1208 4.0081 10 1 1.8260 -0.4205 5.2205 11 1 1.8260 -2.5202 4.0078 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.0138 1.1482 -1.9380 16 6 3.3855 -0.7739 -3.2559 17 1 3.5149 -1.8245 -2.9959 18 6 4.7440 -0.1648 -3.6087 19 16 5.9120 -0.4662 -2.2539 20 6 7.3979 0.3921 -2.8423 21 8 5.4369 0.1971 -1.0905 22 8 6.1873 -1.8590 -2.1949 23 6 2.4609 -0.6598 -4.4405 24 6 2.1414 0.5846 -4.9504 25 6 1.2967 0.6890 -6.0397 26 6 0.7644 -0.4505 -6.6134 27 6 1.0798 -1.6946 -6.1001 28 6 1.9279 -1.7993 -5.0135 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1613 3.4844 33 1 0.7958 -2.1450 -2.0843 34 1 2.5043 -2.6073 -1.8954 35 1 1.4301 -2.5708 -0.4766 36 1 5.1214 -0.6235 -4.5227 37 1 4.6325 0.9088 -3.7602 38 1 7.1737 1.4490 -2.9866 39 1 8.1939 0.2872 -2.1051 40 1 7.7186 -0.0437 -3.7884 41 1 2.5540 1.4751 -4.4997 42 1 1.0505 1.6611 -6.4409 43 1 0.1024 -0.3687 -7.4627 44 1 0.6643 -2.5849 -6.5485 45 1 2.1744 -2.7714 -4.6125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590440407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:52 Heat of formation + Delta-G solvation = -65.985941 kcal Electronic energy + Delta-G solvation = -28910.638881 eV Core-core repulsion = 25021.327850 eV Total energy + Delta-G solvation = -3889.311031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12056 -38.48478 -36.76242 -35.77406 -35.41757 -34.13888 -32.63808 -30.93907 -29.95480 -29.57998 -29.19550 -26.12898 -25.19683 -24.92638 -22.63590 -22.14310 -20.45849 -18.77446 -18.26328 -17.20170 -16.93416 -16.38478 -16.21959 -15.93881 -15.65584 -15.25338 -15.17115 -14.61580 -14.34379 -14.14239 -13.46924 -13.42212 -13.30808 -13.16833 -13.09013 -13.01455 -12.48960 -12.37256 -12.11194 -12.02310 -11.79768 -11.70244 -11.47661 -11.39748 -11.31600 -11.01547 -10.95583 -10.84519 -10.74519 -10.60000 -10.37388 -10.15693 -10.06196 -9.20638 -9.06797 -8.93783 -8.58143 -8.30385 -7.52158 -5.96030 -4.02267 0.05086 1.27008 1.38008 2.80531 3.26820 3.37423 3.41190 3.45634 3.64326 3.70887 3.96297 4.09994 4.48890 4.56674 4.66848 4.72397 4.76086 4.86798 4.96810 5.02678 5.09074 5.15026 5.30463 5.35943 5.47162 5.51872 5.54762 5.67156 5.81824 5.93148 6.02797 6.06230 6.40359 6.41452 6.48095 6.57365 6.83184 6.90102 6.95171 7.14528 7.46990 7.62392 7.81720 8.11195 8.30261 8.57630 8.90246 9.07732 9.62784 11.09681 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.005019 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.165135 B = 5577.734273 C = 7352.757400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.066 0.934 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.076 3.924 14 C 0.503 3.497 15 O -0.530 6.530 16 C -0.062 4.062 17 H 0.108 0.892 18 C -0.596 4.596 19 S 2.404 3.596 20 C -0.660 4.660 21 O -0.892 6.892 22 O -0.943 6.943 23 C -0.062 4.062 24 C -0.101 4.101 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.110 4.110 29 H 0.028 0.972 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -3.741 -19.244 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.084 0.916 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.312 5.312 13 C -0.068 4.068 14 C 0.287 3.713 15 O -0.407 6.407 16 C -0.084 4.084 17 H 0.126 0.874 18 C -0.724 4.724 19 S 2.584 3.416 20 C -0.809 4.809 21 O -0.889 6.889 22 O -0.940 6.940 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.129 4.129 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.650 -3.452 -18.183 19.351 hybrid contribution 0.466 -0.133 0.022 0.485 sum 6.116 -3.585 -18.161 19.495 Atomic orbital electron populations 1.22090 0.98250 0.99329 1.00727 1.18972 0.90684 0.94694 0.79581 0.91573 1.21271 1.31375 1.12962 0.90226 0.92235 1.24853 0.94976 0.95010 0.98856 1.69871 1.36603 1.22718 1.23683 0.86580 0.79454 0.79508 0.82016 1.20107 1.21256 1.20279 1.48140 1.48313 1.11522 1.23207 1.21739 0.98816 0.83468 1.02783 1.19878 0.80645 0.87830 0.82930 1.90643 1.60405 1.14822 1.74836 1.20107 0.92041 1.01793 0.94487 0.87403 1.30314 1.10202 1.12166 1.19762 1.08482 0.78417 0.76581 0.78142 1.30325 1.22207 1.15320 1.13021 1.93792 1.77867 1.75713 1.41512 1.93583 1.84415 1.29629 1.86380 1.19233 0.97876 0.93942 0.95290 1.21178 0.97488 0.97532 0.95684 1.21141 0.97611 0.98609 0.96416 1.21156 0.99963 0.92745 1.00117 1.21082 0.98441 0.97618 0.96749 1.21088 0.97532 0.97902 0.96336 0.95237 0.97132 0.88793 0.92778 0.93592 0.93008 0.89461 0.84718 0.83636 0.85225 0.85376 0.85812 0.85205 0.86021 0.86233 0.85977 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.97 37.16 0.33 -3.28 16 2 C 0.26 6.94 2.62 -69.09 -0.18 6.75 16 3 H 0.07 2.03 6.91 -51.93 -0.36 1.67 16 4 C -0.52 -14.70 7.95 -34.45 -0.27 -14.98 16 5 H 0.06 1.67 7.43 -52.48 -0.39 1.28 16 6 C 0.06 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.58 -12.99 2.75 -175.26 -0.48 -13.47 16 13 C 0.08 1.36 9.16 59.85 0.55 1.91 16 14 C 0.50 10.48 4.94 -10.99 -0.05 10.43 16 15 O -0.53 -12.56 14.09 -9.83 -0.14 -12.69 16 16 C -0.06 -0.95 1.78 -92.93 -0.17 -1.11 16 17 H 0.11 1.52 5.64 -51.93 -0.29 1.22 16 18 C -0.60 -7.19 4.74 37.16 0.18 -7.01 16 19 S 2.40 33.86 5.27 -107.50 -0.57 33.29 16 20 C -0.66 -5.76 10.62 101.05 1.07 -4.69 16 21 O -0.89 -18.14 15.90 -64.41 -1.02 -19.17 16 22 O -0.94 -15.38 18.10 -57.83 -1.05 -16.43 16 23 C -0.06 -0.85 4.77 -104.62 -0.50 -1.35 16 24 C -0.10 -1.37 8.87 -39.58 -0.35 -1.72 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 27 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 28 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 29 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.78 5.93 -51.93 -0.31 0.47 16 35 H 0.09 1.64 7.11 -51.93 -0.37 1.27 16 36 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.15 1.63 7.12 -51.93 -0.37 1.26 16 38 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.13 1.85 7.28 -52.49 -0.38 1.46 16 42 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.23 7.95 -52.49 -0.42 0.81 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -37.92 378.27 -9.56 -47.48 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.54 Total: 3.74 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.06 Total: -20.05 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.14 Total: -38.83 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.21 Total: -48.29 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 33.86 SS G_CDS: -0.57 Total: 33.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.92 -9.56 -47.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590440407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.508 kcal (2) G-P(sol) polarization free energy of solvation -37.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds