Wall clock time and date at job start Tue Mar 31 2020 22:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46787 * 2 1 4 4 C 1.50696 * 109.47161 * 119.99613 * 2 1 3 5 5 H 1.08005 * 119.99719 * 120.00156 * 4 2 1 6 6 C 1.37868 * 120.00557 * 300.00272 * 4 2 1 7 7 N 1.31519 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00548 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46642 * 59.99816 * 8 6 4 10 10 H 1.48497 * 109.47535 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46972 * 300.00353 * 8 6 4 12 12 N 1.46495 * 109.47493 * 240.00144 * 2 1 3 13 13 C 1.46506 * 119.99859 * 300.00317 * 12 2 1 14 14 C 1.34779 * 120.00633 * 119.99338 * 12 2 1 15 15 O 1.21287 * 119.99642 * 355.15101 * 14 12 2 16 16 C 1.50690 * 120.00603 * 175.14579 * 14 12 2 17 17 H 1.09003 * 109.46774 * 332.44711 * 16 14 12 18 18 C 1.52998 * 109.47243 * 212.44928 * 16 14 12 19 19 S 1.81396 * 109.47238 * 66.26698 * 18 16 14 20 20 C 1.81402 * 101.92187 * 182.53777 * 19 18 16 21 21 O 1.42098 * 108.58050 * 297.02537 * 19 18 16 22 22 O 1.42101 * 108.58121 * 68.05421 * 19 18 16 23 23 C 1.50704 * 109.47359 * 92.44514 * 16 14 12 24 24 C 1.38234 * 119.99605 * 59.73057 * 23 16 14 25 25 C 1.38234 * 119.99555 * 179.78993 * 24 23 16 26 26 C 1.38237 * 120.00346 * 0.43972 * 25 24 23 27 27 C 1.38234 * 119.99772 * 359.81264 * 26 25 24 28 28 C 1.38236 * 119.99814 * 240.00510 * 23 16 14 29 29 H 1.09004 * 109.46787 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47040 * 60.00138 * 1 2 3 31 31 H 1.09001 * 109.47175 * 300.00037 * 1 2 3 32 32 H 0.96997 * 120.00273 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47688 * 95.74143 * 13 12 2 34 34 H 1.09001 * 109.46815 * 215.74690 * 13 12 2 35 35 H 1.09004 * 109.46774 * 335.73789 * 13 12 2 36 36 H 1.09007 * 109.46792 * 186.26652 * 18 16 14 37 37 H 1.08997 * 109.47179 * 306.26547 * 18 16 14 38 38 H 1.08995 * 109.46750 * 60.00257 * 20 19 18 39 39 H 1.09004 * 109.46981 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47518 * 299.99955 * 20 19 18 41 41 H 1.07997 * 120.00181 * 359.97438 * 24 23 16 42 42 H 1.08004 * 119.99707 * 180.27111 * 25 24 23 43 43 H 1.07992 * 119.99960 * 179.83295 * 26 25 24 44 44 H 1.07996 * 120.00328 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.00396 * 359.97415 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.8065 -1.1208 4.0081 10 1 1.8260 -0.4205 5.2205 11 1 1.8260 -2.5202 4.0078 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.0138 1.1482 -1.9380 16 6 3.3855 -0.7739 -3.2559 17 1 3.5149 -1.8245 -2.9959 18 6 4.7440 -0.1648 -3.6087 19 16 5.9120 -0.4662 -2.2539 20 6 7.3979 0.3921 -2.8423 21 8 5.4369 0.1971 -1.0905 22 8 6.1873 -1.8590 -2.1949 23 6 2.4609 -0.6598 -4.4405 24 6 2.1414 0.5846 -4.9504 25 6 1.2967 0.6890 -6.0397 26 6 0.7644 -0.4505 -6.6134 27 6 1.0798 -1.6946 -6.1001 28 6 1.9279 -1.7993 -5.0135 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1613 3.4844 33 1 0.7958 -2.1450 -2.0843 34 1 2.5043 -2.6073 -1.8954 35 1 1.4301 -2.5708 -0.4766 36 1 5.1214 -0.6235 -4.5227 37 1 4.6325 0.9088 -3.7602 38 1 7.1737 1.4490 -2.9866 39 1 8.1939 0.2872 -2.1051 40 1 7.7186 -0.0437 -3.7884 41 1 2.5540 1.4751 -4.4997 42 1 1.0505 1.6611 -6.4409 43 1 0.1024 -0.3687 -7.4627 44 1 0.6643 -2.5849 -6.5485 45 1 2.1744 -2.7714 -4.6125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590440407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:51 Heat of formation + Delta-G solvation = -92.867060 kcal Electronic energy + Delta-G solvation = -28911.804534 eV Core-core repulsion = 25021.327850 eV Total energy + Delta-G solvation = -3890.476684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42404 -39.68586 -37.96473 -37.23617 -36.97078 -35.40102 -34.59786 -31.80923 -31.34001 -30.82105 -30.23733 -27.65748 -27.30115 -26.23077 -23.60412 -23.39010 -21.97742 -20.06459 -19.62458 -18.61188 -18.28776 -18.04571 -17.35981 -17.27604 -16.91263 -16.75445 -16.24545 -16.13211 -15.66904 -15.49389 -14.82684 -14.55535 -14.28489 -14.23310 -14.12004 -13.97748 -13.93599 -13.61912 -13.56551 -13.34797 -13.28799 -13.05027 -12.96775 -12.93999 -12.78348 -12.62779 -12.61609 -12.27009 -12.19043 -12.12397 -11.96260 -11.83230 -11.38712 -11.20088 -10.69201 -10.47610 -9.80406 -9.63048 -9.30155 -8.13342 -6.28268 -0.96678 0.36953 0.51664 1.38197 1.42675 1.49225 1.75044 1.82692 2.26259 2.45894 2.66463 2.91594 3.11086 3.14285 3.50478 3.53801 3.69112 3.80399 4.05308 4.08675 4.18434 4.20496 4.31211 4.35961 4.42711 4.62160 4.65704 4.67205 4.74357 4.80048 4.88130 4.89385 4.97263 5.05836 5.06829 5.18039 5.48058 5.56540 5.57429 5.63820 5.66628 5.68569 6.05669 6.11084 6.18251 6.77240 6.81297 7.31401 7.47217 8.91218 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.005019 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.165135 B = 5577.734273 C = 7352.757400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.266 3.734 3 H 0.009 0.991 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.259 1.259 12 N -0.598 5.598 13 C 0.072 3.928 14 C 0.494 3.506 15 O -0.571 6.571 16 C -0.056 4.056 17 H 0.119 0.881 18 C -0.586 4.586 19 S 2.381 3.619 20 C -0.629 4.629 21 O -0.975 6.975 22 O -0.977 6.977 23 C -0.078 4.078 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.114 4.114 29 H 0.045 0.955 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.186 0.814 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 -5.756 -22.272 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.164 3.836 3 H 0.027 0.973 4 C -0.574 4.574 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.184 1.184 12 N -0.328 5.328 13 C -0.071 4.071 14 C 0.281 3.719 15 O -0.451 6.451 16 C -0.078 4.078 17 H 0.137 0.863 18 C -0.716 4.716 19 S 2.569 3.431 20 C -0.782 4.782 21 O -0.972 6.972 22 O -0.974 6.974 23 C -0.080 4.080 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.132 4.132 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.204 0.796 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.185 0.815 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.163 -5.526 -21.204 22.762 hybrid contribution 0.339 0.573 0.797 1.038 sum 6.502 -4.953 -20.406 21.982 Atomic orbital electron populations 1.21847 0.97066 0.99989 0.99782 1.18494 0.91490 0.92197 0.81395 0.97262 1.21518 1.31491 1.12985 0.91399 0.92732 1.25690 0.95107 0.95728 1.01844 1.70009 1.37389 1.23832 1.24378 0.85598 0.78266 0.79287 0.78434 1.20809 1.20311 1.18379 1.48136 1.49128 1.13166 1.22390 1.21952 1.01049 0.81132 1.02917 1.20861 0.79533 0.87717 0.83797 1.90601 1.61452 1.17006 1.76048 1.20072 0.93617 1.01450 0.92656 0.86307 1.30263 1.07938 1.12952 1.20436 1.08544 0.80357 0.76076 0.78118 1.30034 1.17662 1.15554 1.14999 1.93714 1.80370 1.76719 1.46436 1.93529 1.85184 1.31586 1.87146 1.19157 0.98855 0.94820 0.95157 1.21169 0.98941 0.97030 0.96937 1.21373 0.97164 1.00118 0.95861 1.21545 0.99411 0.92242 1.00419 1.21477 0.97378 0.98794 0.95922 1.21355 0.97263 0.97927 0.96644 0.93549 0.96392 0.91288 0.92649 0.91096 0.90130 0.90758 0.79628 0.83087 0.83303 0.84390 0.81513 0.87228 0.84606 0.83393 0.82948 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.97 71.98 0.65 -5.96 16 2 C 0.27 14.98 2.62 44.25 0.12 15.10 16 3 H 0.01 0.63 6.91 -2.38 -0.02 0.61 16 4 C -0.54 -31.63 7.95 25.60 0.20 -31.43 16 5 H 0.05 3.19 7.43 -2.91 -0.02 3.16 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -55.67 11.32 21.44 0.24 -55.42 16 8 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 9 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.60 -27.70 2.75 -826.79 -2.28 -29.98 16 13 C 0.07 2.56 9.16 127.77 1.17 3.73 16 14 C 0.49 21.42 4.94 87.65 0.43 21.85 16 15 O -0.57 -29.05 14.09 11.66 0.16 -28.89 16 16 C -0.06 -1.68 1.78 -12.29 -0.02 -1.70 16 17 H 0.12 3.20 5.64 -2.39 -0.01 3.19 16 18 C -0.59 -13.42 4.74 71.98 0.34 -13.08 16 19 S 2.38 67.12 5.27 -56.49 -0.30 66.83 16 20 C -0.63 -9.13 10.62 113.37 1.20 -7.92 16 21 O -0.98 -42.48 15.90 -121.08 -1.92 -44.40 16 22 O -0.98 -31.82 18.10 -127.37 -2.30 -34.13 16 23 C -0.08 -2.02 4.77 -19.86 -0.09 -2.12 16 24 C -0.12 -3.25 8.87 22.27 0.20 -3.05 16 25 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 26 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 27 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.11 -2.29 9.67 22.27 0.22 -2.08 16 29 H 0.05 2.16 7.67 -2.38 -0.02 2.14 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.34 5.93 -2.39 -0.01 2.33 16 35 H 0.07 2.81 7.11 -2.38 -0.02 2.79 16 36 H 0.19 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.15 3.34 7.12 -2.39 -0.02 3.32 16 38 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.17 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 3.26 7.28 -2.91 -0.02 3.24 16 42 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 45 H 0.14 2.27 7.95 -2.91 -0.02 2.24 16 Total: -1.00 -90.87 378.27 2.15 -88.72 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.99 Total: 20.44 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 5.53 Total: -31.30 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.03 Total: -85.40 kcal Atomic # 8 Polarization: -103.35 SS G_CDS: -4.07 Total: -107.42 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 67.12 SS G_CDS: -0.30 Total: 66.83 kcal Total: -90.87 2.15 -88.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590440407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.145 kcal (2) G-P(sol) polarization free energy of solvation -90.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds