Wall clock time and date at job start Tue Mar 31 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46855 * 2 1 4 4 C 1.50701 * 109.47166 * 239.99684 * 2 1 3 5 5 H 1.07995 * 119.99767 * 239.99384 * 4 2 1 6 6 C 1.37876 * 119.99879 * 59.99801 * 4 2 1 7 7 N 1.31513 * 120.00233 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99919 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46821 * 120.00002 * 8 6 4 11 11 H 1.48498 * 109.47619 * 240.00580 * 8 6 4 12 12 N 1.46497 * 109.47111 * 119.99477 * 2 1 3 13 13 C 1.46500 * 120.00020 * 54.08757 * 12 2 1 14 14 C 1.34779 * 120.00136 * 234.08476 * 12 2 1 15 15 O 1.21283 * 119.99823 * 183.87811 * 14 12 2 16 16 C 1.50700 * 119.99926 * 3.88483 * 14 12 2 17 17 H 1.08998 * 109.46514 * 305.81304 * 16 14 12 18 18 C 1.52993 * 109.47409 * 65.81314 * 16 14 12 19 19 S 1.81402 * 109.47183 * 184.51887 * 18 16 14 20 20 C 1.81400 * 101.92089 * 180.02562 * 19 18 16 21 21 O 1.42103 * 108.57489 * 294.48879 * 19 18 16 22 22 O 1.42094 * 108.57721 * 65.51390 * 19 18 16 23 23 C 1.50699 * 109.46926 * 185.81936 * 16 14 12 24 24 C 1.38230 * 119.99757 * 299.72078 * 23 16 14 25 25 C 1.38240 * 119.99659 * 179.81434 * 24 23 16 26 26 C 1.38236 * 120.00075 * 0.39424 * 25 24 23 27 27 C 1.38231 * 119.99789 * 359.85796 * 26 25 24 28 28 C 1.38234 * 120.00322 * 359.95882 * 27 26 25 29 29 H 1.08997 * 109.46847 * 60.00421 * 1 2 3 30 30 H 1.09004 * 109.46399 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47351 * 300.00093 * 1 2 3 32 32 H 0.96998 * 119.99868 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47459 * 274.55819 * 13 12 2 34 34 H 1.08997 * 109.47253 * 34.55781 * 13 12 2 35 35 H 1.09004 * 109.47352 * 154.55864 * 13 12 2 36 36 H 1.08996 * 109.47479 * 304.52300 * 18 16 14 37 37 H 1.09003 * 109.46842 * 64.52248 * 18 16 14 38 38 H 1.08998 * 109.47369 * 60.00481 * 20 19 18 39 39 H 1.09001 * 109.47034 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47376 * 299.99794 * 20 19 18 41 41 H 1.07999 * 120.00630 * 0.02562 * 24 23 16 42 42 H 1.08001 * 119.99705 * 180.23225 * 25 24 23 43 43 H 1.08002 * 119.99812 * 179.83989 * 26 25 24 44 44 H 1.08000 * 119.99747 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99938 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1474 -0.1861 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 1.5609 -2.0497 1.4955 14 6 2.8885 -0.0753 2.0214 15 8 3.3470 -0.6716 2.9729 16 6 3.2917 1.3534 1.7619 17 1 3.6676 1.4454 0.7430 18 6 2.0775 2.2667 1.9420 19 16 2.5292 3.9672 1.5005 20 6 0.9725 4.8541 1.7843 21 8 3.4934 4.4361 2.4331 22 8 2.8287 4.0101 0.1121 23 6 4.3711 1.7551 2.7338 24 6 4.1232 1.7247 4.0933 25 6 5.1147 2.0895 4.9849 26 6 6.3513 2.4926 4.5166 27 6 6.5974 2.5279 3.1569 28 6 5.6072 2.1595 2.2654 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 -3.4845 33 1 0.6191 -2.0040 2.0422 34 1 1.4143 -2.5970 0.5643 35 1 2.3091 -2.5595 2.1026 36 1 1.2680 1.9265 1.2963 37 1 1.7507 2.2358 2.9814 38 1 0.6785 4.7471 2.8285 39 1 1.1086 5.9103 1.5520 40 1 0.1952 4.4380 1.1435 41 1 3.1562 1.4127 4.4592 42 1 4.9222 2.0622 6.0473 43 1 7.1250 2.7801 5.2132 44 1 7.5634 2.8432 2.7910 45 1 5.7994 2.1875 1.2030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590440414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:59 Heat of formation + Delta-G solvation = -66.125386 kcal Electronic energy + Delta-G solvation = -29266.067505 eV Core-core repulsion = 25376.750428 eV Total energy + Delta-G solvation = -3889.317078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05586 -38.36138 -36.70375 -35.77541 -35.67612 -34.11396 -32.70106 -30.60494 -29.86888 -29.31306 -29.13121 -26.78405 -25.34601 -24.44350 -22.33878 -21.70643 -20.96174 -18.65784 -18.37953 -17.05009 -16.94946 -16.31748 -16.06755 -15.94549 -15.66725 -15.29581 -14.70946 -14.62124 -14.34901 -14.14865 -13.71323 -13.35770 -13.15095 -13.09996 -12.98130 -12.92252 -12.43039 -12.26295 -12.06123 -11.76085 -11.72130 -11.69314 -11.53689 -11.41651 -11.11687 -11.02342 -10.96073 -10.82537 -10.73312 -10.66481 -10.53310 -10.36202 -10.19074 -9.43152 -9.08377 -8.56903 -8.50689 -8.40643 -7.73318 -6.21158 -4.29621 0.12518 1.63487 1.79301 2.87585 3.16218 3.21033 3.30457 3.33951 3.74727 3.86473 4.13631 4.20053 4.32102 4.66595 4.78315 4.82358 4.93417 5.09444 5.10862 5.25585 5.29522 5.31607 5.39860 5.62978 5.65833 5.74386 5.82788 5.98496 6.06653 6.13622 6.28220 6.36401 6.38466 6.48245 6.54985 6.73366 6.76350 6.80767 6.91610 7.08384 7.26393 7.33647 7.60256 7.78910 8.04140 8.31352 8.70225 8.89651 9.39116 10.83808 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.004962 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.273951 B = 5640.971774 C = 6437.253198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.243 3.757 3 H 0.059 0.941 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.589 5.589 13 C 0.092 3.908 14 C 0.526 3.474 15 O -0.558 6.558 16 C -0.047 4.047 17 H 0.122 0.878 18 C -0.613 4.613 19 S 2.414 3.586 20 C -0.662 4.662 21 O -0.927 6.927 22 O -0.922 6.922 23 C -0.081 4.081 24 C -0.070 4.070 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.100 4.100 29 H 0.098 0.902 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.266 0.734 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 6.316 10.484 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 N -0.319 5.319 13 C -0.051 4.051 14 C 0.311 3.689 15 O -0.438 6.438 16 C -0.069 4.069 17 H 0.139 0.861 18 C -0.740 4.740 19 S 2.594 3.406 20 C -0.811 4.811 21 O -0.924 6.924 22 O -0.919 6.919 23 C -0.081 4.081 24 C -0.088 4.088 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.118 4.118 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.268 6.453 10.513 12.401 hybrid contribution -0.761 -0.779 -0.795 1.348 sum 0.507 5.674 9.718 11.265 Atomic orbital electron populations 1.22188 0.97860 1.00507 1.00813 1.19269 0.91690 0.93657 0.81119 0.92397 1.21341 1.32381 1.13574 0.89959 0.91874 1.24870 0.94657 0.94854 0.99048 1.69815 1.35898 1.22271 1.24138 0.86438 0.78723 0.79706 0.82595 1.19747 1.20881 1.20685 1.48204 1.43106 1.15492 1.25105 1.21428 0.98433 0.83978 1.01268 1.19830 0.79087 0.87398 0.82559 1.90625 1.55648 1.66600 1.30915 1.19855 0.92021 0.93547 1.01510 0.86055 1.30595 1.08155 1.22255 1.13035 1.08141 0.77890 0.78362 0.76203 1.30327 1.23953 1.15072 1.11710 1.93621 1.55357 1.78776 1.64617 1.93669 1.82232 1.85408 1.30561 1.19347 0.94361 1.00398 0.94010 1.20780 0.99195 0.96492 0.92309 1.20990 0.93749 1.00421 0.99111 1.21044 0.96916 0.99960 0.95484 1.20955 0.98836 1.00670 0.93364 1.21028 0.92680 0.98235 0.99875 0.88387 0.94355 0.96902 0.92416 0.94011 0.90731 0.91764 0.82833 0.84845 0.85595 0.85441 0.84985 0.86520 0.86513 0.86608 0.86309 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.57 37.16 0.32 -2.88 16 2 C 0.24 5.36 1.67 -69.08 -0.12 5.24 16 3 H 0.06 1.30 4.33 -51.93 -0.22 1.08 16 4 C -0.53 -13.34 8.11 -34.44 -0.28 -13.62 16 5 H 0.06 1.62 7.68 -52.49 -0.40 1.22 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -22.82 11.32 55.43 0.63 -22.19 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.59 -11.98 2.75 -175.26 -0.48 -12.46 16 13 C 0.09 1.69 9.37 59.85 0.56 2.25 16 14 C 0.53 10.55 6.89 -10.98 -0.08 10.48 16 15 O -0.56 -12.10 14.42 5.55 0.08 -12.02 16 16 C -0.05 -0.85 1.53 -92.93 -0.14 -0.99 16 17 H 0.12 2.31 7.15 -51.93 -0.37 1.94 16 18 C -0.61 -8.92 4.68 37.15 0.17 -8.75 16 19 S 2.41 34.06 5.21 -107.50 -0.56 33.50 16 20 C -0.66 -6.34 10.62 101.05 1.07 -5.26 16 21 O -0.93 -14.69 16.40 -57.83 -0.95 -15.64 16 22 O -0.92 -17.07 18.10 -57.83 -1.05 -18.12 16 23 C -0.08 -1.39 2.75 -104.63 -0.29 -1.68 16 24 C -0.07 -1.13 7.82 -39.58 -0.31 -1.44 16 25 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 27 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 28 C -0.10 -1.67 9.40 -39.58 -0.37 -2.04 16 29 H 0.10 2.22 6.07 -51.93 -0.32 1.91 16 30 H 0.04 0.77 7.54 -51.93 -0.39 0.38 16 31 H 0.01 0.22 7.64 -51.93 -0.40 -0.18 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.38 7.43 -51.93 -0.39 0.99 16 35 H 0.06 1.17 7.24 -51.93 -0.38 0.79 16 36 H 0.15 2.28 4.85 -51.93 -0.25 2.03 16 37 H 0.13 1.52 7.23 -51.92 -0.38 1.15 16 38 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.13 1.07 8.14 -51.92 -0.42 0.64 16 40 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.12 1.77 7.36 -52.49 -0.39 1.39 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 45 H 0.12 1.91 7.95 -52.49 -0.42 1.49 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -33.00 373.42 -8.86 -41.85 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.39 Total: 7.70 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -0.74 Total: -23.40 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.15 Total: -34.66 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.91 Total: -45.78 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 34.06 SS G_CDS: -0.56 Total: 33.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.00 -8.86 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590440414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.271 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds