Wall clock time and date at job start Tue Mar 31 2020 22:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46855 * 2 1 4 4 C 1.50701 * 109.47166 * 239.99684 * 2 1 3 5 5 H 1.07995 * 119.99767 * 239.99384 * 4 2 1 6 6 C 1.37876 * 119.99879 * 59.99801 * 4 2 1 7 7 N 1.31513 * 120.00233 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99919 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46821 * 120.00002 * 8 6 4 11 11 H 1.48498 * 109.47619 * 240.00580 * 8 6 4 12 12 N 1.46497 * 109.47111 * 119.99477 * 2 1 3 13 13 C 1.46500 * 120.00020 * 54.08757 * 12 2 1 14 14 C 1.34779 * 120.00136 * 234.08476 * 12 2 1 15 15 O 1.21283 * 119.99823 * 183.87811 * 14 12 2 16 16 C 1.50700 * 119.99926 * 3.88483 * 14 12 2 17 17 H 1.08998 * 109.46514 * 305.81304 * 16 14 12 18 18 C 1.52993 * 109.47409 * 65.81314 * 16 14 12 19 19 S 1.81402 * 109.47183 * 184.51887 * 18 16 14 20 20 C 1.81400 * 101.92089 * 180.02562 * 19 18 16 21 21 O 1.42103 * 108.57489 * 294.48879 * 19 18 16 22 22 O 1.42094 * 108.57721 * 65.51390 * 19 18 16 23 23 C 1.50699 * 109.46926 * 185.81936 * 16 14 12 24 24 C 1.38230 * 119.99757 * 299.72078 * 23 16 14 25 25 C 1.38240 * 119.99659 * 179.81434 * 24 23 16 26 26 C 1.38236 * 120.00075 * 0.39424 * 25 24 23 27 27 C 1.38231 * 119.99789 * 359.85796 * 26 25 24 28 28 C 1.38234 * 120.00322 * 359.95882 * 27 26 25 29 29 H 1.08997 * 109.46847 * 60.00421 * 1 2 3 30 30 H 1.09004 * 109.46399 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47351 * 300.00093 * 1 2 3 32 32 H 0.96998 * 119.99868 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47459 * 274.55819 * 13 12 2 34 34 H 1.08997 * 109.47253 * 34.55781 * 13 12 2 35 35 H 1.09004 * 109.47352 * 154.55864 * 13 12 2 36 36 H 1.08996 * 109.47479 * 304.52300 * 18 16 14 37 37 H 1.09003 * 109.46842 * 64.52248 * 18 16 14 38 38 H 1.08998 * 109.47369 * 60.00481 * 20 19 18 39 39 H 1.09001 * 109.47034 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47376 * 299.99794 * 20 19 18 41 41 H 1.07999 * 120.00630 * 0.02562 * 24 23 16 42 42 H 1.08001 * 119.99705 * 180.23225 * 25 24 23 43 43 H 1.08002 * 119.99812 * 179.83989 * 26 25 24 44 44 H 1.08000 * 119.99747 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99938 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1474 -0.1861 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 1.5609 -2.0497 1.4955 14 6 2.8885 -0.0753 2.0214 15 8 3.3470 -0.6716 2.9729 16 6 3.2917 1.3534 1.7619 17 1 3.6676 1.4454 0.7430 18 6 2.0775 2.2667 1.9420 19 16 2.5292 3.9672 1.5005 20 6 0.9725 4.8541 1.7843 21 8 3.4934 4.4361 2.4331 22 8 2.8287 4.0101 0.1121 23 6 4.3711 1.7551 2.7338 24 6 4.1232 1.7247 4.0933 25 6 5.1147 2.0895 4.9849 26 6 6.3513 2.4926 4.5166 27 6 6.5974 2.5279 3.1569 28 6 5.6072 2.1595 2.2654 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 -3.4845 33 1 0.6191 -2.0040 2.0422 34 1 1.4143 -2.5970 0.5643 35 1 2.3091 -2.5595 2.1026 36 1 1.2680 1.9265 1.2963 37 1 1.7507 2.2358 2.9814 38 1 0.6785 4.7471 2.8285 39 1 1.1086 5.9103 1.5520 40 1 0.1952 4.4380 1.1435 41 1 3.1562 1.4127 4.4592 42 1 4.9222 2.0622 6.0473 43 1 7.1250 2.7801 5.2132 44 1 7.5634 2.8432 2.7910 45 1 5.7994 2.1875 1.2030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590440414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:58 Heat of formation + Delta-G solvation = -87.670930 kcal Electronic energy + Delta-G solvation = -29267.001790 eV Core-core repulsion = 25376.750428 eV Total energy + Delta-G solvation = -3890.251363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49792 -39.66545 -37.90926 -37.36957 -36.96370 -35.39459 -34.55822 -31.75435 -31.08651 -30.78874 -30.19249 -28.22336 -27.22707 -25.74207 -23.55310 -23.25391 -22.32958 -19.88896 -19.78481 -18.68457 -18.36281 -17.69684 -17.38950 -17.15159 -16.87626 -16.79302 -16.20228 -16.03282 -15.79222 -15.53168 -15.04127 -14.73499 -14.39570 -14.19000 -13.96334 -13.92897 -13.89147 -13.63172 -13.54111 -13.16929 -13.05782 -12.98332 -12.93393 -12.88882 -12.79266 -12.74319 -12.52908 -12.19580 -12.15073 -11.97919 -11.90580 -11.81646 -11.65335 -11.21951 -10.65156 -10.45956 -9.69393 -9.58716 -9.39643 -8.14639 -6.27942 -0.93949 0.45966 0.62111 1.39615 1.44387 1.52120 1.63102 1.83952 2.26923 2.45277 2.72211 2.97613 3.11904 3.14436 3.46970 3.54567 3.70784 3.93240 4.08625 4.09474 4.21740 4.24499 4.32383 4.40331 4.52056 4.59613 4.68157 4.69675 4.72640 4.84509 4.93923 4.95401 4.97406 5.02667 5.12504 5.22559 5.40677 5.56881 5.61641 5.66984 5.71210 5.73309 6.00650 6.20093 6.21810 6.60767 6.81798 7.25673 7.44275 8.88295 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.004962 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.273951 B = 5640.971774 C = 6437.253198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.245 3.755 3 H 0.052 0.948 4 C -0.548 4.548 5 H 0.048 0.952 6 C 0.031 3.969 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.284 1.284 12 N -0.593 5.593 13 C 0.091 3.909 14 C 0.523 3.477 15 O -0.576 6.576 16 C -0.047 4.047 17 H 0.095 0.905 18 C -0.614 4.614 19 S 2.410 3.590 20 C -0.637 4.637 21 O -0.950 6.950 22 O -0.980 6.980 23 C -0.096 4.096 24 C -0.086 4.086 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.127 4.127 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.267 0.733 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 7.204 12.447 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.144 3.856 3 H 0.070 0.930 4 C -0.587 4.587 5 H 0.066 0.934 6 C -0.170 4.170 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.210 1.210 12 N -0.323 5.323 13 C -0.051 4.051 14 C 0.310 3.690 15 O -0.457 6.457 16 C -0.069 4.069 17 H 0.113 0.887 18 C -0.741 4.741 19 S 2.595 3.405 20 C -0.790 4.790 21 O -0.947 6.947 22 O -0.977 6.977 23 C -0.097 4.097 24 C -0.104 4.104 25 C -0.145 4.145 26 C -0.134 4.134 27 C -0.145 4.145 28 C -0.148 4.148 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.423 7.303 12.467 14.455 hybrid contribution -0.482 -1.034 -1.336 1.757 sum -0.059 6.269 11.131 12.775 Atomic orbital electron populations 1.22020 0.96460 1.00659 1.01276 1.19131 0.92658 0.93115 0.80673 0.93007 1.21564 1.32247 1.13296 0.91552 0.93401 1.25429 0.95022 0.95524 1.01073 1.69893 1.36487 1.22919 1.24539 0.85683 0.78329 0.78577 0.80104 1.20081 1.19985 1.20991 1.48226 1.43319 1.16132 1.24647 1.21506 0.99390 0.83052 1.01189 1.20198 0.78469 0.88211 0.82129 1.90596 1.56147 1.67287 1.31708 1.19761 0.93774 0.92970 1.00390 0.88709 1.30606 1.06458 1.22064 1.14959 1.07900 0.79746 0.78220 0.74610 1.30112 1.19461 1.14850 1.14577 1.93579 1.58055 1.78701 1.64368 1.93600 1.84431 1.86068 1.33588 1.19388 0.94311 1.01436 0.94535 1.20963 1.00200 0.97184 0.92017 1.21418 0.93451 0.99187 1.00473 1.21489 0.97642 0.98712 0.95567 1.21317 0.99299 0.99999 0.93874 1.21214 0.93597 0.99852 1.00147 0.90401 0.94296 0.93849 0.92370 0.91722 0.91335 0.91965 0.83239 0.81676 0.81944 0.83510 0.83510 0.85956 0.83484 0.83122 0.84025 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 8.57 71.98 0.62 -5.28 16 2 C 0.25 10.94 1.67 44.25 0.07 11.01 16 3 H 0.05 2.40 4.33 -2.39 -0.01 2.39 16 4 C -0.55 -27.98 8.11 25.60 0.21 -27.77 16 5 H 0.05 2.53 7.68 -2.91 -0.02 2.51 16 6 C 0.03 1.60 5.30 84.65 0.45 2.05 16 7 N -0.90 -47.05 11.32 21.45 0.24 -46.80 16 8 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.59 -24.26 2.75 -826.78 -2.28 -26.54 16 13 C 0.09 3.31 9.37 127.77 1.20 4.51 16 14 C 0.52 21.26 6.89 87.66 0.60 21.86 16 15 O -0.58 -25.09 14.42 -3.04 -0.04 -25.14 16 16 C -0.05 -1.73 1.53 -12.29 -0.02 -1.75 16 17 H 0.09 3.92 7.15 -2.39 -0.02 3.90 16 18 C -0.61 -17.60 4.68 71.98 0.34 -17.26 16 19 S 2.41 67.18 5.21 -56.49 -0.29 66.89 16 20 C -0.64 -9.97 10.62 113.37 1.20 -8.77 16 21 O -0.95 -29.82 16.40 -127.37 -2.09 -31.91 16 22 O -0.98 -37.81 18.10 -127.37 -2.31 -40.12 16 23 C -0.10 -3.37 2.75 -19.87 -0.05 -3.43 16 24 C -0.09 -2.68 7.82 22.27 0.17 -2.51 16 25 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 26 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 27 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 28 C -0.13 -4.48 9.40 22.27 0.21 -4.27 16 29 H 0.08 3.51 6.07 -2.39 -0.01 3.50 16 30 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 31 H 0.04 1.45 7.64 -2.39 -0.02 1.43 16 32 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.54 7.43 -2.39 -0.02 2.52 16 35 H 0.06 2.26 7.24 -2.38 -0.02 2.25 16 36 H 0.15 4.37 4.85 -2.39 -0.01 4.36 16 37 H 0.17 3.47 7.23 -2.39 -0.02 3.46 16 38 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.12 3.56 7.36 -2.91 -0.02 3.53 16 42 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 45 H 0.11 3.88 7.95 -2.91 -0.02 3.86 16 Total: -1.00 -73.09 373.42 1.93 -71.16 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.99 Total: 29.46 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 5.67 Total: -40.94 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -2.03 Total: -73.34 kcal Atomic # 8 Polarization: -92.73 SS G_CDS: -4.44 Total: -97.17 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 67.18 SS G_CDS: -0.29 Total: 66.89 kcal Total: -73.09 1.93 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590440414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.506 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds