Wall clock time and date at job start Tue Mar 31 2020 23:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36046 * 117.00124 * 2 1 4 4 C 1.38518 * 119.96978 * 359.97438 * 3 2 1 5 5 C 1.38403 * 120.38110 * 180.02562 * 4 3 2 6 6 C 1.38104 * 120.31669 * 0.02562 * 5 4 3 7 7 F 1.35093 * 120.03853 * 180.02562 * 6 5 4 8 8 C 1.39979 * 119.92384 * 359.97438 * 6 5 4 9 9 C 1.47411 * 120.18469 * 179.97438 * 8 6 5 10 10 O 1.21600 * 119.99855 * 89.99979 * 9 8 6 11 11 N 1.34783 * 119.99474 * 269.99992 * 9 8 6 12 12 C 1.47416 * 125.65197 * 359.97438 * 11 9 8 13 13 C 1.54915 * 104.83222 * 155.91128 * 12 11 9 14 14 C 1.55150 * 101.58155 * 37.00692 * 13 12 11 15 15 O 1.42902 * 110.72125 * 83.04251 * 14 13 12 16 16 C 1.50702 * 110.71940 * 206.13740 * 14 13 12 17 17 H 1.07995 * 119.99831 * 356.76549 * 16 14 13 18 18 C 1.37880 * 119.99776 * 176.49168 * 16 14 13 19 19 N 1.31518 * 119.99950 * 354.18565 * 18 16 14 20 20 Si 1.86802 * 119.99793 * 174.18124 * 18 16 14 21 21 H 1.48503 * 109.46825 * 94.99217 * 20 18 16 22 22 H 1.48502 * 109.46898 * 214.98837 * 20 18 16 23 23 H 1.48497 * 109.47244 * 334.99396 * 20 18 16 24 24 C 1.47317 * 125.61146 * 180.19999 * 11 9 8 25 25 C 1.39028 * 119.97357 * 180.27632 * 3 2 1 26 26 O 1.35754 * 120.15010 * 359.97438 * 25 3 2 27 27 C 1.42896 * 116.99949 * 270.22967 * 26 25 3 28 28 H 1.08996 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47041 * 299.99876 * 1 2 3 30 30 H 1.09000 * 109.47040 * 59.99724 * 1 2 3 31 31 H 1.08000 * 119.80739 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.84615 * 180.02562 * 5 4 3 33 33 H 1.09003 * 110.36999 * 37.07370 * 12 11 9 34 34 H 1.09002 * 110.37030 * 274.74555 * 12 11 9 35 35 H 1.09004 * 111.00121 * 278.93593 * 13 12 11 36 36 H 1.08993 * 111.03929 * 155.10026 * 13 12 11 37 37 H 0.96697 * 113.99890 * 182.44319 * 15 14 13 38 38 H 0.96998 * 119.99682 * 179.97438 * 19 18 16 39 39 H 1.08998 * 110.06326 * 61.67614 * 24 11 9 40 40 H 1.09005 * 109.85312 * 300.42256 * 24 11 9 41 41 H 1.08999 * 109.47425 * 300.00307 * 27 26 25 42 42 H 1.09001 * 109.47637 * 60.00197 * 27 26 25 43 43 H 1.09001 * 109.47162 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2917 2.3735 -0.0005 5 6 1.9112 3.6111 -0.0011 6 6 3.2893 3.7009 -0.0016 7 9 3.8881 4.9119 -0.0016 8 6 4.0650 2.5357 -0.0011 9 6 5.5364 2.6248 -0.0022 10 8 6.1440 2.6625 1.0504 11 7 6.2081 2.6644 -1.1701 12 6 5.6004 2.6259 -2.5126 13 6 6.6425 3.3007 -3.4391 14 6 7.9761 2.7961 -2.8275 15 8 8.2972 1.4935 -3.3197 16 6 9.0948 3.7637 -3.1161 17 1 8.9105 4.6360 -3.7255 18 6 10.3523 3.5381 -2.5975 19 7 10.5493 2.5440 -1.7593 20 14 11.7761 4.6446 -3.0855 21 1 11.9381 5.7185 -2.0727 22 1 13.0235 3.8422 -3.1599 23 1 11.4986 5.2526 -4.4116 24 6 7.6717 2.7487 -1.3154 25 6 3.4351 1.2843 -0.0058 26 8 4.1769 0.1473 -0.0110 27 6 4.5325 -0.4010 1.2598 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2134 2.3128 -0.0005 32 1 1.3141 4.5111 -0.0011 33 1 4.6654 3.1860 -2.5220 34 1 5.4291 1.5948 -2.8221 35 1 6.5720 4.3869 -3.3804 36 1 6.5306 2.9591 -4.4681 37 1 9.1026 1.1170 -2.9395 38 1 11.4340 2.3851 -1.3948 39 1 8.1428 1.8727 -0.8696 40 1 8.0398 3.6551 -0.8345 41 1 5.1183 0.3284 1.8192 42 1 3.6277 -0.6443 1.8167 43 1 5.1233 -1.3052 1.1129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592849287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:40 Heat of formation + Delta-G solvation = -162.365177 kcal Electronic energy + Delta-G solvation = -30909.361055 eV Core-core repulsion = 26449.657531 eV Total energy + Delta-G solvation = -4459.703524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.90563 -40.81537 -39.33342 -38.19287 -37.18575 -36.66969 -34.26812 -32.21421 -31.28710 -30.13067 -29.75120 -27.79818 -27.60624 -26.88969 -25.36815 -23.64067 -22.59726 -22.21934 -19.81146 -19.44416 -18.26132 -17.77674 -17.63328 -17.16298 -16.63032 -16.22937 -16.04242 -15.66794 -15.33060 -15.16550 -15.00686 -14.74383 -14.62109 -14.56505 -14.20657 -13.29459 -13.14933 -13.04817 -12.93744 -12.80490 -12.52887 -12.42346 -12.02070 -11.94360 -11.68241 -11.48079 -11.30090 -11.13460 -11.03439 -10.77292 -10.61508 -10.49008 -10.16867 -10.11586 -9.62766 -9.27181 -9.10510 -8.69455 -8.30912 -8.27573 -7.89071 -6.26533 -4.35031 0.63267 0.88449 2.70671 2.99378 3.08388 3.22624 3.30515 3.34106 3.53031 3.68526 4.13898 4.28914 4.45764 4.54835 4.71646 4.81671 4.86935 5.00692 5.06123 5.16156 5.19285 5.32860 5.43451 5.45625 5.67804 5.71760 5.76136 5.77602 5.84514 5.85633 6.09755 6.15420 6.31504 6.53635 6.77980 6.83818 6.90223 6.96196 7.29243 7.39447 7.41024 7.74708 8.01688 8.16011 8.58762 8.69218 9.31007 9.37408 10.80662 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.003417 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.812309 B = 8191.316397 C = 8589.700358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.301 6.301 3 C 0.099 3.901 4 C -0.162 4.162 5 C -0.120 4.120 6 C 0.107 3.893 7 F -0.125 7.125 8 C -0.127 4.127 9 C 0.574 3.426 10 O -0.539 6.539 11 N -0.593 5.593 12 C 0.102 3.898 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.582 6.582 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.892 5.892 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.107 3.893 25 C 0.128 3.872 26 O -0.316 6.316 27 C 0.035 3.965 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.381 0.619 38 H 0.270 0.730 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.915 -3.284 3.637 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.053 3.947 4 C -0.180 4.180 5 C -0.139 4.139 6 C 0.087 3.913 7 F -0.103 7.103 8 C -0.132 4.132 9 C 0.360 3.640 10 O -0.418 6.418 11 N -0.324 5.324 12 C -0.021 4.021 13 C -0.154 4.154 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.576 4.576 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.531 5.531 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.014 4.014 25 C 0.082 3.918 26 O -0.232 6.232 27 C -0.058 4.058 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.822 -3.526 3.858 21.468 hybrid contribution 1.060 0.904 0.414 1.454 sum -19.762 -2.621 4.273 20.388 Atomic orbital electron populations 1.23139 0.78306 1.04310 1.01405 1.86211 1.21252 1.25445 1.88538 1.19206 0.91038 0.85351 0.99152 1.21020 1.00480 0.90740 1.05806 1.20850 0.92039 0.98980 1.02041 1.17309 0.90341 0.79612 1.04030 1.91562 1.83993 1.41052 1.93710 1.20309 0.95601 0.92144 1.05129 1.17197 0.85090 0.77993 0.83734 1.90791 1.68826 1.51529 1.30622 1.48791 1.09998 1.68935 1.04689 1.22346 0.96309 1.00802 0.82623 1.22747 0.94514 0.99730 0.98430 1.19491 0.91006 0.82329 0.86387 1.86124 1.48736 1.33684 1.70525 1.21505 0.94013 1.09291 1.32828 0.91460 1.25081 0.99193 0.95458 0.93578 1.69765 1.23588 1.30269 1.29453 0.86396 0.81248 0.80264 0.79059 1.20543 1.20925 1.19627 1.23149 0.74933 1.02181 1.01116 1.17545 0.86306 0.85516 1.02434 1.86039 1.70139 1.37102 1.29930 1.23106 0.99734 0.99185 0.83816 0.87946 0.92554 0.92360 0.83678 0.83520 0.92381 0.91192 0.90423 0.90351 0.76941 0.92038 0.91249 0.91193 0.92475 0.93436 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.41 10.28 -34.53 -0.35 -3.76 16 3 C 0.10 1.24 6.69 -39.19 -0.26 0.98 16 4 C -0.16 -1.58 9.03 -39.42 -0.36 -1.93 16 5 C -0.12 -1.31 10.00 -39.57 -0.40 -1.70 16 6 C 0.11 1.63 7.28 -38.98 -0.28 1.35 16 7 F -0.12 -2.10 16.83 2.25 0.04 -2.06 16 8 C -0.13 -2.24 4.54 -104.81 -0.48 -2.72 16 9 C 0.57 12.51 6.45 -12.52 -0.08 12.42 16 10 O -0.54 -13.34 17.19 5.28 0.09 -13.25 16 11 N -0.59 -13.15 3.33 -171.55 -0.57 -13.72 16 12 C 0.10 1.98 6.67 -2.53 -0.02 1.96 16 13 C -0.12 -2.41 6.23 -24.58 -0.15 -2.56 16 14 C 0.25 6.11 0.85 -89.94 -0.08 6.04 16 15 O -0.58 -14.76 13.08 -35.23 -0.46 -15.22 16 16 C -0.54 -14.21 8.11 -34.44 -0.28 -14.49 16 17 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 18 C 0.07 1.85 5.25 -17.82 -0.09 1.76 16 19 N -0.89 -23.95 10.98 55.43 0.61 -23.34 16 20 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.11 2.68 5.22 -2.90 -0.02 2.67 16 25 C 0.13 2.05 5.75 -38.59 -0.22 1.82 16 26 O -0.32 -5.39 9.65 -33.62 -0.32 -5.72 16 27 C 0.04 0.50 11.13 101.05 1.12 1.63 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.15 0.87 6.26 -52.49 -0.33 0.55 16 32 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.06 0.98 7.69 -51.93 -0.40 0.58 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.38 9.82 7.53 45.56 0.34 10.16 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.07 1.88 7.90 -51.93 -0.41 1.47 16 40 H 0.07 1.91 7.81 -51.93 -0.41 1.51 16 41 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -32.13 368.53 -5.94 -38.07 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.90 Total: 9.50 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.59 Total: 8.36 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.04 Total: -37.06 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.05 Total: -37.96 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.13 -5.94 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.296 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds