Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46811 * 2 1 4 4 C 1.53003 * 109.47161 * 240.00606 * 2 1 3 5 5 O 1.42900 * 109.46824 * 304.99542 * 4 2 1 6 6 C 1.42900 * 113.99697 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47093 * 180.02562 * 6 5 4 8 8 C 1.53006 * 117.49721 * 243.74756 * 7 6 5 9 9 C 1.53001 * 117.49915 * 175.08701 * 7 6 5 10 10 N 1.46492 * 109.47339 * 120.00130 * 2 1 3 11 11 S 1.65604 * 120.00074 * 265.00378 * 10 2 1 12 12 O 1.42102 * 106.40053 * 178.53574 * 11 10 2 13 13 O 1.42101 * 106.40305 * 311.45819 * 11 10 2 14 14 C 1.76195 * 107.21782 * 65.00088 * 11 10 2 15 15 C 1.38660 * 119.87335 * 269.72710 * 14 11 10 16 16 C 1.38617 * 120.49972 * 179.72047 * 15 14 11 17 17 C 1.37640 * 120.24950 * 0.55638 * 16 15 14 18 18 C 1.40707 * 119.74138 * 359.71957 * 17 16 15 19 19 C 1.41392 * 120.23852 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99896 * 204.37770 * 19 18 17 21 21 C 1.39945 * 120.00430 * 24.37776 * 19 18 17 22 22 N 1.30826 * 119.99817 * 17.87291 * 21 19 18 23 23 Si 1.86794 * 120.00099 * 197.86572 * 21 19 18 24 24 H 1.48502 * 109.46951 * 90.00289 * 23 21 19 25 25 H 1.48496 * 109.47525 * 210.00103 * 23 21 19 26 26 H 1.48502 * 109.47621 * 330.00396 * 23 21 19 27 27 C 1.37598 * 119.87967 * 89.99780 * 14 11 10 28 28 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47334 * 299.99579 * 1 2 3 30 30 H 1.09006 * 109.47286 * 60.00131 * 1 2 3 31 31 H 1.09000 * 109.47244 * 65.00188 * 4 2 1 32 32 H 1.08996 * 109.46837 * 184.99652 * 4 2 1 33 33 H 1.09006 * 109.47012 * 300.00413 * 6 5 4 34 34 H 1.09009 * 109.47292 * 60.00114 * 6 5 4 35 35 H 1.09001 * 115.54864 * 29.41631 * 7 6 5 36 36 H 1.08995 * 117.49970 * 359.97438 * 8 7 6 37 37 H 1.08998 * 117.49464 * 145.02358 * 8 7 6 38 38 H 1.08994 * 117.50135 * 214.98027 * 9 7 6 39 39 H 1.09003 * 117.49768 * 0.02562 * 9 7 6 40 40 H 0.97008 * 120.00090 * 85.00162 * 10 2 1 41 41 H 1.07999 * 119.75039 * 359.97438 * 15 14 11 42 42 H 1.07999 * 119.87823 * 180.25078 * 16 15 14 43 43 H 1.08002 * 120.12939 * 179.74760 * 17 16 15 44 44 H 0.97004 * 119.99890 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.12612 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4703 -2.0303 -1.3096 6 6 1.8846 -2.7927 -2.4449 7 6 1.2162 -4.1685 -2.4068 8 6 2.1245 -5.3914 -2.2629 9 6 1.4425 -5.0972 -3.6014 10 7 2.0184 -0.6906 1.1961 11 16 2.4121 0.1772 2.5505 12 8 2.8123 -0.7699 3.5314 13 8 3.2436 1.2444 2.1156 14 6 0.9274 0.9145 3.1474 15 6 0.5557 2.1749 2.7047 16 6 -0.6126 2.7648 3.1613 17 6 -1.4115 2.1085 4.0699 18 6 -1.0413 0.8315 4.5305 19 6 -1.8544 0.1476 5.4633 20 1 -1.4231 -0.6066 6.1048 21 6 -3.2182 0.4479 5.5554 22 7 -3.8159 1.0813 4.5791 23 14 -4.1851 -0.0556 7.0722 24 1 -4.1310 1.0352 8.0784 25 1 -5.5985 -0.3120 6.6958 26 1 -3.5946 -1.2903 7.6485 27 6 0.1440 0.2400 4.0555 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.7517 -0.1581 -2.1370 32 1 3.1263 -0.7993 -1.2057 33 1 1.5933 -2.2728 -3.3577 34 1 2.9677 -2.9139 -2.4257 35 1 0.2423 -4.2046 -1.9186 36 1 3.1981 -5.2158 -2.1958 37 1 1.7479 -6.2322 -1.6804 38 1 0.6177 -5.7446 -3.8990 39 1 2.0679 -4.7282 -4.4144 40 1 2.1110 -1.6562 1.1948 41 1 1.1791 2.6992 1.9955 42 1 -0.8945 3.7452 2.8067 43 1 -2.3193 2.5716 4.4275 44 1 -4.7612 1.2891 4.6427 45 1 0.4374 -0.7400 4.4020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593654842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -88.044818 kcal Electronic energy + Delta-G solvation = -27343.952532 eV Core-core repulsion = 23453.684956 eV Total energy + Delta-G solvation = -3890.267576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.83295 -37.65340 -37.25414 -36.60304 -35.28142 -35.23112 -33.83221 -30.10408 -29.98174 -29.76140 -27.60764 -25.83201 -25.46216 -22.66685 -21.86127 -21.34299 -20.97910 -20.76506 -19.14482 -18.03496 -17.16131 -16.86457 -16.24009 -16.05183 -15.86216 -15.21026 -15.02445 -14.76387 -14.65241 -14.36568 -13.59064 -13.43878 -13.38662 -13.33158 -12.67978 -12.56012 -12.48526 -11.91772 -11.83124 -11.70165 -11.57702 -11.52603 -11.42432 -11.37328 -11.35474 -11.07952 -10.99645 -10.89891 -10.80115 -10.62624 -10.54089 -10.44904 -9.76458 -9.64712 -9.63632 -9.33705 -9.12714 -8.00925 -7.68204 -6.91547 -4.51771 1.07935 2.22027 2.64821 3.01024 3.05240 3.07968 3.26413 3.57594 3.68346 3.84201 4.28161 4.45913 4.52288 4.61169 4.73566 4.87414 4.94118 5.05680 5.13077 5.19702 5.30875 5.34415 5.39191 5.41904 5.45006 5.60685 5.63545 5.77653 5.81567 5.95492 6.06825 6.17875 6.19184 6.39066 6.68131 6.71176 6.78236 6.87495 7.04961 7.07870 7.22930 7.34531 7.40849 7.74450 7.83007 7.96228 8.42218 8.68611 8.73673 10.03824 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003146 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.114452 B = 8898.053285 C =10092.671647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.157 3.843 3 H 0.102 0.898 4 C 0.059 3.941 5 O -0.376 6.376 6 C 0.093 3.907 7 C -0.152 4.152 8 C -0.178 4.178 9 C -0.176 4.176 10 N -1.112 6.112 11 S 2.687 3.313 12 O -0.974 6.974 13 O -0.978 6.978 14 C -0.629 4.629 15 C -0.149 4.149 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.092 3.908 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.418 0.582 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.283 0.717 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -5.783 -14.138 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.049 3.951 3 H 0.120 0.880 4 C -0.019 4.019 5 O -0.295 6.295 6 C 0.016 3.984 7 C -0.170 4.170 8 C -0.214 4.214 9 C -0.213 4.213 10 N -0.870 5.870 11 S 2.783 3.217 12 O -0.964 6.964 13 O -0.968 6.968 14 C -0.721 4.721 15 C -0.170 4.170 16 C -0.139 4.139 17 C -0.139 4.139 18 C 0.089 3.911 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.142 4.142 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.252 0.748 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.142 0.858 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.527 -5.519 -13.742 16.183 hybrid contribution -1.220 -0.348 0.386 1.327 sum 5.306 -5.867 -13.355 15.522 Atomic orbital electron populations 1.22298 0.94099 1.03671 1.03160 1.20807 0.95482 0.95541 0.83220 0.88039 1.22799 0.97379 0.83993 0.97738 1.87909 1.70149 1.26314 1.45139 1.21978 0.97233 0.90362 0.88808 1.22154 1.01524 0.90195 1.03120 1.23083 0.98763 0.99678 0.99924 1.22977 1.03583 1.02905 0.91858 1.55562 1.83943 1.19851 1.27678 1.01673 0.74782 0.73089 0.72156 1.93536 1.82158 1.62420 1.58297 1.93505 1.65497 1.55952 1.81887 1.29716 1.21802 1.07081 1.13501 1.20040 0.98331 0.94671 1.03962 1.20791 0.95217 0.98705 0.99228 1.21627 0.99709 0.94421 0.98155 1.17676 0.90952 0.91352 0.91168 1.19630 0.92753 1.19249 1.17294 0.89935 1.25924 0.98340 0.93308 0.96702 1.69783 1.12117 1.30740 1.29229 0.86248 0.78415 0.80178 0.81588 1.19185 1.20243 1.18435 1.20767 0.96956 0.98481 0.97994 0.91185 0.90419 0.92175 0.92090 0.92568 0.93020 0.93324 0.86666 0.88708 0.88558 0.88463 0.88805 0.74801 0.87715 0.88481 0.85822 0.90626 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.32 37.16 0.35 -2.15 16 2 C 0.16 2.10 3.31 -67.93 -0.23 1.87 16 3 H 0.10 1.31 7.50 -51.93 -0.39 0.92 16 4 C 0.06 0.64 5.73 37.16 0.21 0.85 16 5 O -0.38 -4.40 9.17 -35.23 -0.32 -4.73 16 6 C 0.09 0.86 6.22 37.16 0.23 1.09 16 7 C -0.15 -1.37 6.05 -90.62 -0.55 -1.92 16 8 C -0.18 -1.42 10.18 -26.69 -0.27 -1.69 16 9 C -0.18 -1.27 10.25 -26.69 -0.27 -1.54 16 10 N -1.11 -16.79 5.46 -4.89 -0.03 -16.81 16 11 S 2.69 50.74 5.72 -107.50 -0.61 50.13 16 12 O -0.97 -20.82 17.27 -57.17 -0.99 -21.80 16 13 O -0.98 -19.72 16.60 -57.17 -0.95 -20.67 16 14 C -0.63 -13.54 5.05 -39.66 -0.20 -13.74 16 15 C -0.15 -3.14 8.61 -39.29 -0.34 -3.48 16 16 C -0.12 -2.63 10.02 -39.66 -0.40 -3.03 16 17 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 18 C 0.09 2.36 5.58 -106.82 -0.60 1.76 16 19 C -0.46 -11.79 9.05 -37.74 -0.34 -12.14 16 20 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 21 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 22 N -0.79 -19.50 10.95 55.55 0.61 -18.89 16 23 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 27 C -0.12 -2.88 9.26 -38.87 -0.36 -3.24 16 28 H 0.07 1.04 7.56 -51.93 -0.39 0.65 16 29 H 0.08 1.33 6.18 -51.93 -0.32 1.01 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.41 7.88 -51.92 -0.41 0.00 16 35 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.42 5.75 8.58 -34.48 -0.30 5.46 16 41 H 0.10 1.98 7.59 -52.49 -0.40 1.58 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.12 3.11 6.15 -52.49 -0.32 2.78 16 44 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 45 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -30.03 385.05 -11.41 -41.44 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.70 Total: 11.33 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: -3.19 Total: -38.89 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.58 Total: -35.70 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -2.26 Total: -47.20 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 50.74 SS G_CDS: -0.61 Total: 50.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.03 -11.41 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593654842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.601 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds