Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46811 * 2 1 4 4 C 1.53003 * 109.47161 * 240.00606 * 2 1 3 5 5 O 1.42900 * 109.46824 * 304.99542 * 4 2 1 6 6 C 1.42900 * 113.99697 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47093 * 180.02562 * 6 5 4 8 8 C 1.53006 * 117.49721 * 243.74756 * 7 6 5 9 9 C 1.53001 * 117.49915 * 175.08701 * 7 6 5 10 10 N 1.46492 * 109.47339 * 120.00130 * 2 1 3 11 11 S 1.65604 * 120.00074 * 265.00378 * 10 2 1 12 12 O 1.42102 * 106.40053 * 178.53574 * 11 10 2 13 13 O 1.42101 * 106.40305 * 311.45819 * 11 10 2 14 14 C 1.76195 * 107.21782 * 65.00088 * 11 10 2 15 15 C 1.38660 * 119.87335 * 269.72710 * 14 11 10 16 16 C 1.38617 * 120.49972 * 179.72047 * 15 14 11 17 17 C 1.37640 * 120.24950 * 0.55638 * 16 15 14 18 18 C 1.40707 * 119.74138 * 359.71957 * 17 16 15 19 19 C 1.41392 * 120.23852 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99896 * 204.37770 * 19 18 17 21 21 C 1.39945 * 120.00430 * 24.37776 * 19 18 17 22 22 N 1.30826 * 119.99817 * 17.87291 * 21 19 18 23 23 Si 1.86794 * 120.00099 * 197.86572 * 21 19 18 24 24 H 1.48502 * 109.46951 * 90.00289 * 23 21 19 25 25 H 1.48496 * 109.47525 * 210.00103 * 23 21 19 26 26 H 1.48502 * 109.47621 * 330.00396 * 23 21 19 27 27 C 1.37598 * 119.87967 * 89.99780 * 14 11 10 28 28 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47334 * 299.99579 * 1 2 3 30 30 H 1.09006 * 109.47286 * 60.00131 * 1 2 3 31 31 H 1.09000 * 109.47244 * 65.00188 * 4 2 1 32 32 H 1.08996 * 109.46837 * 184.99652 * 4 2 1 33 33 H 1.09006 * 109.47012 * 300.00413 * 6 5 4 34 34 H 1.09009 * 109.47292 * 60.00114 * 6 5 4 35 35 H 1.09001 * 115.54864 * 29.41631 * 7 6 5 36 36 H 1.08995 * 117.49970 * 359.97438 * 8 7 6 37 37 H 1.08998 * 117.49464 * 145.02358 * 8 7 6 38 38 H 1.08994 * 117.50135 * 214.98027 * 9 7 6 39 39 H 1.09003 * 117.49768 * 0.02562 * 9 7 6 40 40 H 0.97008 * 120.00090 * 85.00162 * 10 2 1 41 41 H 1.07999 * 119.75039 * 359.97438 * 15 14 11 42 42 H 1.07999 * 119.87823 * 180.25078 * 16 15 14 43 43 H 1.08002 * 120.12939 * 179.74760 * 17 16 15 44 44 H 0.97004 * 119.99890 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.12612 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4703 -2.0303 -1.3096 6 6 1.8846 -2.7927 -2.4449 7 6 1.2162 -4.1685 -2.4068 8 6 2.1245 -5.3914 -2.2629 9 6 1.4425 -5.0972 -3.6014 10 7 2.0184 -0.6906 1.1961 11 16 2.4121 0.1772 2.5505 12 8 2.8123 -0.7699 3.5314 13 8 3.2436 1.2444 2.1156 14 6 0.9274 0.9145 3.1474 15 6 0.5557 2.1749 2.7047 16 6 -0.6126 2.7648 3.1613 17 6 -1.4115 2.1085 4.0699 18 6 -1.0413 0.8315 4.5305 19 6 -1.8544 0.1476 5.4633 20 1 -1.4231 -0.6066 6.1048 21 6 -3.2182 0.4479 5.5554 22 7 -3.8159 1.0813 4.5791 23 14 -4.1851 -0.0556 7.0722 24 1 -4.1310 1.0352 8.0784 25 1 -5.5985 -0.3120 6.6958 26 1 -3.5946 -1.2903 7.6485 27 6 0.1440 0.2400 4.0555 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.7517 -0.1581 -2.1370 32 1 3.1263 -0.7993 -1.2057 33 1 1.5933 -2.2728 -3.3577 34 1 2.9677 -2.9139 -2.4257 35 1 0.2423 -4.2046 -1.9186 36 1 3.1981 -5.2158 -2.1958 37 1 1.7479 -6.2322 -1.6804 38 1 0.6177 -5.7446 -3.8990 39 1 2.0679 -4.7282 -4.4144 40 1 2.1110 -1.6562 1.1948 41 1 1.1791 2.6992 1.9955 42 1 -0.8945 3.7452 2.8067 43 1 -2.3193 2.5716 4.4275 44 1 -4.7612 1.2891 4.6427 45 1 0.4374 -0.7400 4.4020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593654842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -106.741718 kcal Electronic energy + Delta-G solvation = -27344.763290 eV Core-core repulsion = 23453.684956 eV Total energy + Delta-G solvation = -3891.078334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.65980 -39.42402 -38.32788 -37.93490 -36.90256 -36.26530 -35.64751 -31.89918 -31.57934 -31.14987 -28.42840 -27.32580 -26.69663 -23.63405 -23.24221 -22.80718 -22.30673 -21.53048 -20.64993 -19.68731 -18.58833 -17.85013 -17.68220 -17.30206 -16.87754 -16.73112 -16.54103 -16.26239 -15.57142 -15.42140 -15.21417 -15.04188 -14.48282 -14.38401 -14.28740 -13.89515 -13.62208 -13.41135 -13.25122 -13.18031 -13.06971 -13.03216 -12.83650 -12.76732 -12.58647 -12.49973 -12.36926 -12.21682 -11.93917 -11.87035 -11.53463 -11.33858 -11.29634 -11.13096 -11.12055 -10.47363 -10.36709 -9.80180 -9.52652 -8.72213 -6.43537 -0.46602 0.43729 0.86894 1.36926 1.46329 1.49523 2.12582 2.17803 2.55821 2.58469 2.80574 2.99260 3.46688 3.55731 3.78090 3.93544 3.99680 4.09922 4.16449 4.31830 4.38775 4.40516 4.43267 4.48409 4.53107 4.66886 4.71424 4.78741 4.81117 4.87078 4.92750 5.00644 5.03036 5.08456 5.20851 5.23976 5.25710 5.29267 5.43397 5.52581 5.59448 5.91359 5.95943 6.11914 6.14499 6.33343 6.54624 6.81338 6.86898 8.25511 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003146 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.114452 B = 8898.053285 C =10092.671647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.149 3.851 3 H 0.112 0.888 4 C 0.062 3.938 5 O -0.399 6.399 6 C 0.091 3.909 7 C -0.171 4.171 8 C -0.183 4.183 9 C -0.161 4.161 10 N -1.099 6.099 11 S 2.716 3.284 12 O -0.999 6.999 13 O -0.984 6.984 14 C -0.634 4.634 15 C -0.141 4.141 16 C -0.121 4.121 17 C -0.140 4.140 18 C 0.063 3.937 19 C -0.500 4.500 20 H 0.075 0.925 21 C 0.039 3.961 22 N -0.820 5.820 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.265 1.265 26 H -0.261 1.261 27 C -0.143 4.143 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.425 0.575 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.291 0.709 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -5.587 -16.061 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.042 3.958 3 H 0.130 0.870 4 C -0.016 4.016 5 O -0.318 6.318 6 C 0.015 3.985 7 C -0.189 4.189 8 C -0.220 4.220 9 C -0.198 4.198 10 N -0.861 5.861 11 S 2.809 3.191 12 O -0.990 6.990 13 O -0.974 6.974 14 C -0.723 4.723 15 C -0.161 4.161 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.060 3.940 19 C -0.529 4.529 20 H 0.093 0.907 21 C -0.177 4.177 22 N -0.446 5.446 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.164 4.164 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.262 0.738 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.218 -5.310 -15.666 18.047 hybrid contribution -1.362 -0.406 0.825 1.643 sum 5.856 -5.716 -14.841 16.948 Atomic orbital electron populations 1.22239 0.95042 1.02839 1.02718 1.21089 0.94725 0.96457 0.83509 0.87034 1.22803 0.97925 0.83902 0.97001 1.87885 1.70678 1.26840 1.46434 1.22107 0.97797 0.90107 0.88503 1.22160 1.01087 0.90829 1.04824 1.23156 0.98974 0.99119 1.00729 1.23062 1.03522 1.01661 0.91576 1.55281 1.83634 1.20173 1.26970 1.00837 0.73531 0.72560 0.72164 1.93497 1.82336 1.62981 1.60176 1.93493 1.65163 1.56638 1.82062 1.30173 1.22340 1.07346 1.12399 1.20429 0.98025 0.94314 1.03378 1.21127 0.94974 0.99764 0.98125 1.21630 1.00121 0.94569 0.99679 1.18009 0.91902 0.92167 0.91888 1.19836 0.94104 1.20450 1.18532 0.90692 1.26691 0.98626 0.93035 0.99312 1.69812 1.12830 1.31307 1.30607 0.85207 0.77214 0.79685 0.77683 1.18616 1.18960 1.18529 1.20794 0.97501 0.98759 0.99379 0.92242 0.93547 0.89842 0.89409 0.91337 0.91675 0.92323 0.88426 0.88124 0.88731 0.87858 0.87393 0.73848 0.84817 0.85504 0.87023 0.89793 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 9.32 71.98 0.67 -4.01 16 2 C 0.15 3.65 3.31 44.99 0.15 3.80 16 3 H 0.11 2.55 7.50 -2.38 -0.02 2.53 16 4 C 0.06 1.15 5.73 71.98 0.41 1.56 16 5 O -0.40 -8.57 9.17 -148.98 -1.37 -9.94 16 6 C 0.09 1.49 6.22 71.98 0.45 1.94 16 7 C -0.17 -2.89 6.05 -10.79 -0.07 -2.96 16 8 C -0.18 -2.69 10.18 30.62 0.31 -2.38 16 9 C -0.16 -2.01 10.25 30.62 0.31 -1.70 16 10 N -1.10 -31.76 5.46 -169.39 -0.93 -32.68 16 11 S 2.72 100.20 5.72 -56.49 -0.32 99.88 16 12 O -1.00 -42.68 17.27 -128.00 -2.21 -44.89 16 13 O -0.98 -37.61 16.60 -128.00 -2.12 -39.73 16 14 C -0.63 -27.29 5.05 22.22 0.11 -27.18 16 15 C -0.14 -5.78 8.61 22.46 0.19 -5.58 16 16 C -0.12 -5.25 10.02 22.22 0.22 -5.03 16 17 C -0.14 -7.08 8.70 22.73 0.20 -6.88 16 18 C 0.06 3.40 5.58 -21.29 -0.12 3.28 16 19 C -0.50 -26.85 9.05 23.46 0.21 -26.64 16 20 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 21 C 0.04 1.92 5.14 85.26 0.44 2.36 16 22 N -0.82 -41.27 10.95 21.83 0.24 -41.03 16 23 Si 0.98 37.72 29.59 68.60 2.03 39.75 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 27 C -0.14 -7.10 9.26 22.73 0.21 -6.89 16 28 H 0.06 1.75 7.56 -2.39 -0.02 1.73 16 29 H 0.05 1.57 6.18 -2.39 -0.01 1.56 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.83 7.88 -2.38 -0.02 0.81 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 1.34 8.03 -2.39 -0.02 1.33 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.43 11.28 8.58 -96.73 -0.83 10.45 16 41 H 0.13 4.68 7.59 -2.91 -0.02 4.66 16 42 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.11 5.81 6.15 -2.91 -0.02 5.80 16 44 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 45 H 0.10 5.14 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -65.91 385.05 -0.80 -66.71 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.17 Total: 38.23 kcal Atomic # 6 Polarization: -80.02 SS G_CDS: 3.71 Total: -76.31 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -0.69 Total: -73.71 kcal Atomic # 8 Polarization: -88.86 SS G_CDS: -5.70 Total: -94.56 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 100.20 SS G_CDS: -0.32 Total: 99.88 kcal Total: -65.91 -0.80 -66.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593654842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.028 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds