Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53005 * 109.47074 * 119.99837 * 2 1 3 5 5 O 1.42906 * 109.46998 * 55.00123 * 4 2 1 6 6 C 1.42895 * 113.99950 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47213 * 180.02562 * 6 5 4 8 8 C 1.53001 * 117.49667 * 243.74620 * 7 6 5 9 9 C 1.52998 * 117.49971 * 175.08444 * 7 6 5 10 10 N 1.46495 * 109.47379 * 239.99902 * 2 1 3 11 11 S 1.65606 * 120.00104 * 95.00033 * 10 2 1 12 12 O 1.42095 * 106.39828 * 311.45796 * 11 10 2 13 13 O 1.42099 * 106.40039 * 178.54185 * 11 10 2 14 14 C 1.76196 * 107.21539 * 65.00195 * 11 10 2 15 15 C 1.38661 * 119.87204 * 269.97491 * 14 11 10 16 16 C 1.38617 * 120.49583 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.25342 * 0.02562 * 16 15 14 18 18 C 1.40700 * 119.74061 * 0.02562 * 17 16 15 19 19 C 1.41398 * 120.24232 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99853 * 335.57949 * 19 18 17 21 21 C 1.39945 * 119.99944 * 155.57438 * 19 18 17 22 22 N 1.30826 * 120.00259 * 341.92569 * 21 19 18 23 23 Si 1.86806 * 119.99911 * 161.92338 * 21 19 18 24 24 H 1.48501 * 109.46904 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47094 * 120.00303 * 23 21 19 26 26 H 1.48500 * 109.46961 * 240.00232 * 23 21 19 27 27 C 1.37599 * 119.87557 * 90.00268 * 14 11 10 28 28 H 1.09000 * 109.47561 * 300.00040 * 1 2 3 29 29 H 1.09000 * 109.47032 * 60.00457 * 1 2 3 30 30 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46861 * 175.00177 * 4 2 1 32 32 H 1.08997 * 109.46884 * 295.00458 * 4 2 1 33 33 H 1.08998 * 109.47062 * 300.00131 * 6 5 4 34 34 H 1.09004 * 109.47479 * 59.99491 * 6 5 4 35 35 H 1.08997 * 115.54960 * 29.41678 * 7 6 5 36 36 H 1.08998 * 117.50050 * 359.97438 * 8 7 6 37 37 H 1.09004 * 117.49888 * 145.01905 * 8 7 6 38 38 H 1.08998 * 117.49992 * 214.97467 * 9 7 6 39 39 H 1.08999 * 117.49801 * 0.02562 * 9 7 6 40 40 H 0.97007 * 119.99854 * 275.00293 * 10 2 1 41 41 H 1.07988 * 119.75201 * 0.02562 * 15 14 11 42 42 H 1.08003 * 119.86873 * 179.97438 * 16 15 14 43 43 H 1.07999 * 120.13160 * 180.02562 * 17 16 15 44 44 H 0.96997 * 120.00151 * 180.02562 * 22 21 19 45 45 H 1.07990 * 120.12801 * 0.25159 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0304 1.3095 6 6 1.8835 -2.7925 2.4454 7 6 1.2162 -4.1687 2.4064 8 6 0.2443 -4.5147 3.5363 9 6 1.6213 -5.1809 3.4799 10 7 2.0184 -0.6906 -1.1961 11 16 2.4123 0.1772 -2.5505 12 8 1.3247 1.0592 -2.7922 13 8 2.8777 -0.7635 -3.5084 14 6 3.7928 1.1909 -2.1371 15 6 3.5869 2.4653 -1.6310 16 6 4.6636 3.2740 -1.3019 17 6 5.9510 2.8191 -1.4752 18 6 6.1718 1.5281 -1.9890 19 6 7.4900 1.0498 -2.1708 20 1 8.3039 1.7472 -2.3033 21 6 7.7399 -0.3271 -2.1791 22 7 6.8588 -1.1549 -1.6790 23 14 9.3314 -0.9832 -2.9044 24 1 10.1534 0.1497 -3.4003 25 1 10.0850 -1.7205 -1.8586 26 1 9.0212 -1.9004 -4.0303 27 6 5.0712 0.7152 -2.3182 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7994 1.2056 32 1 1.7516 -0.1583 2.1370 33 1 2.9666 -2.9137 2.4270 34 1 1.5916 -2.2724 3.3578 35 1 0.9895 -4.5533 1.4121 36 1 0.0806 -3.7621 4.3075 37 1 -0.6218 -5.1272 3.2853 38 1 1.6606 -6.2314 3.1918 39 1 2.3629 -4.8662 4.2141 40 1 2.1110 -1.6562 -1.1948 41 1 2.5802 2.8306 -1.4921 42 1 4.4915 4.2652 -0.9088 43 1 6.7884 3.4507 -1.2178 44 1 7.0322 -2.1092 -1.6844 45 1 5.2293 -0.2760 -2.7167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593654843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = -89.005380 kcal Electronic energy + Delta-G solvation = -27651.529286 eV Core-core repulsion = 23761.220057 eV Total energy + Delta-G solvation = -3890.309229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.72571 -37.65212 -37.19830 -36.49116 -35.19242 -35.10638 -33.84640 -30.27620 -29.95744 -29.60366 -27.55935 -25.76020 -25.50144 -22.61527 -21.83744 -21.32235 -21.10210 -20.70561 -18.96110 -17.88026 -17.12985 -16.73367 -16.40887 -16.04963 -15.54506 -15.17528 -15.03724 -14.76978 -14.65303 -14.26587 -13.59722 -13.45909 -13.34934 -13.15691 -12.71570 -12.62033 -12.44413 -11.93646 -11.80211 -11.69416 -11.50384 -11.42005 -11.35792 -11.32665 -11.19673 -11.11244 -11.02818 -10.84058 -10.77798 -10.62676 -10.53822 -10.36394 -9.91129 -9.61931 -9.51202 -9.38205 -9.02167 -8.12476 -7.65654 -6.96935 -4.54645 1.17660 2.18161 2.67843 3.00461 3.05482 3.06764 3.36453 3.65385 3.74009 3.82137 4.29464 4.49080 4.60632 4.67962 4.82705 4.93824 5.10269 5.12892 5.20575 5.30834 5.36790 5.39285 5.45490 5.48151 5.54219 5.64229 5.69544 5.82629 5.86224 6.00521 6.01229 6.07093 6.23657 6.38343 6.49164 6.51547 6.82625 6.85633 7.05633 7.18983 7.20326 7.41790 7.46968 7.63041 7.75830 7.98698 8.31447 8.65306 8.69329 10.00077 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.003925 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.768355 B = 7131.555072 C = 8845.606858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.161 3.839 3 H 0.098 0.902 4 C 0.056 3.944 5 O -0.379 6.379 6 C 0.092 3.908 7 C -0.150 4.150 8 C -0.179 4.179 9 C -0.176 4.176 10 N -1.110 6.110 11 S 2.688 3.312 12 O -0.977 6.977 13 O -0.971 6.971 14 C -0.642 4.642 15 C -0.164 4.164 16 C -0.105 4.105 17 C -0.189 4.189 18 C 0.091 3.909 19 C -0.458 4.458 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.790 5.790 23 Si 0.911 3.089 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.268 1.268 27 C -0.055 4.055 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.418 0.582 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.286 0.714 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -4.691 9.869 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.053 3.947 3 H 0.116 0.884 4 C -0.022 4.022 5 O -0.298 6.298 6 C 0.016 3.984 7 C -0.168 4.168 8 C -0.216 4.216 9 C -0.213 4.213 10 N -0.868 5.868 11 S 2.783 3.217 12 O -0.967 6.967 13 O -0.962 6.962 14 C -0.734 4.734 15 C -0.185 4.185 16 C -0.124 4.124 17 C -0.209 4.209 18 C 0.087 3.913 19 C -0.487 4.487 20 H 0.101 0.899 21 C -0.145 4.145 22 N -0.415 5.415 23 Si 0.735 3.265 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.193 1.193 27 C -0.076 4.076 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.253 0.747 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.247 -4.888 8.975 13.782 hybrid contribution 1.598 -0.367 0.516 1.718 sum -7.649 -5.255 9.490 13.274 Atomic orbital electron populations 1.22232 0.94739 1.03129 1.02460 1.20732 0.94888 0.95557 0.83512 0.88371 1.22841 0.98301 0.83678 0.97428 1.87835 1.70245 1.26561 1.45199 1.21973 0.97923 0.89941 0.88581 1.22142 1.03386 0.95216 0.96023 1.23069 0.93593 1.03691 1.01229 1.22977 0.98483 0.98112 1.01684 1.55546 1.82073 1.19468 1.29676 1.01694 0.74195 0.73339 0.72444 1.93502 1.52934 1.66496 1.83758 1.93542 1.82321 1.62427 1.57902 1.29973 1.14816 1.09683 1.18905 1.20017 0.97654 0.93552 1.07276 1.20627 0.93285 0.97825 1.00712 1.21211 0.95282 0.98355 1.06024 1.17705 0.93417 0.91108 0.89072 1.19641 0.93917 0.91849 1.43291 0.89895 1.25962 0.98898 0.97028 0.92569 1.69730 1.35236 1.05057 1.31489 0.86207 0.81112 0.79579 0.79618 1.18270 1.19834 1.19323 1.21235 0.89578 1.00438 0.96336 0.92098 0.91227 0.91351 0.91679 0.92349 0.92686 0.93410 0.86779 0.88797 0.88751 0.88472 0.88705 0.74729 0.87634 0.88494 0.88317 0.90322 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.32 37.16 0.35 -1.81 16 2 C 0.16 2.30 3.18 -67.93 -0.22 2.09 16 3 H 0.10 1.41 7.23 -51.93 -0.38 1.03 16 4 C 0.06 0.71 5.73 37.16 0.21 0.93 16 5 O -0.38 -4.89 9.17 -35.23 -0.32 -5.21 16 6 C 0.09 1.00 6.22 37.16 0.23 1.24 16 7 C -0.15 -1.48 6.05 -90.62 -0.55 -2.03 16 8 C -0.18 -1.47 10.18 -26.69 -0.27 -1.74 16 9 C -0.18 -1.44 10.25 -26.69 -0.27 -1.71 16 10 N -1.11 -18.26 5.46 -4.89 -0.03 -18.28 16 11 S 2.69 54.35 5.65 -107.50 -0.61 53.75 16 12 O -0.98 -20.58 16.53 -57.17 -0.94 -21.53 16 13 O -0.97 -22.45 17.26 -57.17 -0.99 -23.43 16 14 C -0.64 -14.50 5.81 -39.66 -0.23 -14.73 16 15 C -0.16 -3.49 8.91 -39.29 -0.35 -3.84 16 16 C -0.11 -2.23 10.02 -39.66 -0.40 -2.62 16 17 C -0.19 -4.37 9.80 -38.87 -0.38 -4.75 16 18 C 0.09 2.32 5.58 -106.82 -0.60 1.72 16 19 C -0.46 -11.62 9.05 -37.74 -0.34 -11.96 16 20 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 21 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.79 -19.55 10.97 55.55 0.61 -18.94 16 23 Si 0.91 18.11 29.60 -169.99 -5.03 13.08 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.05 -1.39 8.16 -38.87 -0.32 -1.71 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.98 7.64 -51.93 -0.40 0.59 16 30 H 0.07 0.88 7.56 -51.93 -0.39 0.49 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.46 7.88 -51.93 -0.41 0.05 16 35 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.42 6.44 8.58 -34.48 -0.30 6.15 16 41 H 0.11 2.02 7.60 -52.49 -0.40 1.62 16 42 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 44 H 0.29 6.42 8.30 -40.82 -0.34 6.09 16 45 H 0.14 3.62 5.71 -52.49 -0.30 3.32 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -30.02 387.03 -11.46 -41.48 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.76 Total: 12.49 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: -3.22 Total: -39.23 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.58 Total: -37.22 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.26 Total: -50.17 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.61 Total: 53.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.02 -11.46 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593654843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.525 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds