Wall clock time and date at job start Tue Mar 31 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53005 * 109.47074 * 119.99837 * 2 1 3 5 5 O 1.42906 * 109.46998 * 55.00123 * 4 2 1 6 6 C 1.42895 * 113.99950 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47213 * 180.02562 * 6 5 4 8 8 C 1.53001 * 117.49667 * 243.74620 * 7 6 5 9 9 C 1.52998 * 117.49971 * 175.08444 * 7 6 5 10 10 N 1.46495 * 109.47379 * 239.99902 * 2 1 3 11 11 S 1.65606 * 120.00104 * 95.00033 * 10 2 1 12 12 O 1.42095 * 106.39828 * 311.45796 * 11 10 2 13 13 O 1.42099 * 106.40039 * 178.54185 * 11 10 2 14 14 C 1.76196 * 107.21539 * 65.00195 * 11 10 2 15 15 C 1.38661 * 119.87204 * 269.97491 * 14 11 10 16 16 C 1.38617 * 120.49583 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.25342 * 0.02562 * 16 15 14 18 18 C 1.40700 * 119.74061 * 0.02562 * 17 16 15 19 19 C 1.41398 * 120.24232 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99853 * 335.57949 * 19 18 17 21 21 C 1.39945 * 119.99944 * 155.57438 * 19 18 17 22 22 N 1.30826 * 120.00259 * 341.92569 * 21 19 18 23 23 Si 1.86806 * 119.99911 * 161.92338 * 21 19 18 24 24 H 1.48501 * 109.46904 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47094 * 120.00303 * 23 21 19 26 26 H 1.48500 * 109.46961 * 240.00232 * 23 21 19 27 27 C 1.37599 * 119.87557 * 90.00268 * 14 11 10 28 28 H 1.09000 * 109.47561 * 300.00040 * 1 2 3 29 29 H 1.09000 * 109.47032 * 60.00457 * 1 2 3 30 30 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46861 * 175.00177 * 4 2 1 32 32 H 1.08997 * 109.46884 * 295.00458 * 4 2 1 33 33 H 1.08998 * 109.47062 * 300.00131 * 6 5 4 34 34 H 1.09004 * 109.47479 * 59.99491 * 6 5 4 35 35 H 1.08997 * 115.54960 * 29.41678 * 7 6 5 36 36 H 1.08998 * 117.50050 * 359.97438 * 8 7 6 37 37 H 1.09004 * 117.49888 * 145.01905 * 8 7 6 38 38 H 1.08998 * 117.49992 * 214.97467 * 9 7 6 39 39 H 1.08999 * 117.49801 * 0.02562 * 9 7 6 40 40 H 0.97007 * 119.99854 * 275.00293 * 10 2 1 41 41 H 1.07988 * 119.75201 * 0.02562 * 15 14 11 42 42 H 1.08003 * 119.86873 * 179.97438 * 16 15 14 43 43 H 1.07999 * 120.13160 * 180.02562 * 17 16 15 44 44 H 0.96997 * 120.00151 * 180.02562 * 22 21 19 45 45 H 1.07990 * 120.12801 * 0.25159 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0304 1.3095 6 6 1.8835 -2.7925 2.4454 7 6 1.2162 -4.1687 2.4064 8 6 0.2443 -4.5147 3.5363 9 6 1.6213 -5.1809 3.4799 10 7 2.0184 -0.6906 -1.1961 11 16 2.4123 0.1772 -2.5505 12 8 1.3247 1.0592 -2.7922 13 8 2.8777 -0.7635 -3.5084 14 6 3.7928 1.1909 -2.1371 15 6 3.5869 2.4653 -1.6310 16 6 4.6636 3.2740 -1.3019 17 6 5.9510 2.8191 -1.4752 18 6 6.1718 1.5281 -1.9890 19 6 7.4900 1.0498 -2.1708 20 1 8.3039 1.7472 -2.3033 21 6 7.7399 -0.3271 -2.1791 22 7 6.8588 -1.1549 -1.6790 23 14 9.3314 -0.9832 -2.9044 24 1 10.1534 0.1497 -3.4003 25 1 10.0850 -1.7205 -1.8586 26 1 9.0212 -1.9004 -4.0303 27 6 5.0712 0.7152 -2.3182 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7994 1.2056 32 1 1.7516 -0.1583 2.1370 33 1 2.9666 -2.9137 2.4270 34 1 1.5916 -2.2724 3.3578 35 1 0.9895 -4.5533 1.4121 36 1 0.0806 -3.7621 4.3075 37 1 -0.6218 -5.1272 3.2853 38 1 1.6606 -6.2314 3.1918 39 1 2.3629 -4.8662 4.2141 40 1 2.1110 -1.6562 -1.1948 41 1 2.5802 2.8306 -1.4921 42 1 4.4915 4.2652 -0.9088 43 1 6.7884 3.4507 -1.2178 44 1 7.0322 -2.1092 -1.6844 45 1 5.2293 -0.2760 -2.7167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593654843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:06 Heat of formation + Delta-G solvation = -107.583498 kcal Electronic energy + Delta-G solvation = -27652.334894 eV Core-core repulsion = 23761.220057 eV Total energy + Delta-G solvation = -3891.114836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67160 -39.42386 -38.32609 -37.93278 -36.88376 -36.25371 -35.64337 -32.07882 -31.39437 -31.17162 -28.45262 -27.34170 -26.72069 -23.59193 -23.24359 -22.98218 -22.32878 -21.54348 -20.51674 -19.60033 -18.61641 -17.93936 -17.80343 -17.42947 -16.74981 -16.58546 -16.52357 -16.24179 -15.85444 -15.37293 -15.17832 -15.01770 -14.54628 -14.40482 -14.28247 -13.79548 -13.69331 -13.42734 -13.25768 -13.10444 -13.04898 -12.89139 -12.86270 -12.82362 -12.60034 -12.50949 -12.37352 -12.25004 -11.97333 -11.88426 -11.65567 -11.32814 -11.25008 -11.15511 -11.14568 -10.44000 -10.41044 -9.90731 -9.47731 -8.75543 -6.43553 -0.45365 0.39200 0.91595 1.36262 1.45096 1.51331 2.12776 2.16602 2.52206 2.55513 2.82650 2.97908 3.51153 3.52857 3.75106 3.91751 3.99733 4.06978 4.14267 4.33259 4.35157 4.38098 4.41720 4.51167 4.54598 4.64271 4.71954 4.72757 4.78553 4.79224 5.00728 5.02135 5.02401 5.08262 5.21722 5.23918 5.25156 5.28823 5.42066 5.47497 5.62763 5.83557 5.93714 6.10196 6.19843 6.26846 6.46147 6.81038 6.85690 8.23707 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.003925 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.768355 B = 7131.555072 C = 8845.606858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.100 0.900 4 C 0.059 3.941 5 O -0.392 6.392 6 C 0.090 3.910 7 C -0.170 4.170 8 C -0.170 4.170 9 C -0.170 4.170 10 N -1.100 6.100 11 S 2.711 3.289 12 O -0.982 6.982 13 O -1.005 7.005 14 C -0.649 4.649 15 C -0.158 4.158 16 C -0.104 4.104 17 C -0.196 4.196 18 C 0.059 3.941 19 C -0.494 4.494 20 H 0.083 0.917 21 C 0.034 3.966 22 N -0.820 5.820 23 Si 0.979 3.021 24 H -0.255 1.255 25 H -0.261 1.261 26 H -0.269 1.269 27 C -0.087 4.087 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.423 0.577 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.291 0.709 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -4.152 11.494 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.118 0.882 4 C -0.019 4.019 5 O -0.311 6.311 6 C 0.013 3.987 7 C -0.189 4.189 8 C -0.206 4.206 9 C -0.207 4.207 10 N -0.861 5.861 11 S 2.805 3.195 12 O -0.972 6.972 13 O -0.995 6.995 14 C -0.739 4.739 15 C -0.179 4.179 16 C -0.123 4.123 17 C -0.216 4.216 18 C 0.056 3.944 19 C -0.523 4.523 20 H 0.101 0.899 21 C -0.182 4.182 22 N -0.446 5.446 23 Si 0.799 3.201 24 H -0.178 1.178 25 H -0.186 1.186 26 H -0.193 1.193 27 C -0.108 4.108 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.259 0.741 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.137 -4.328 10.613 15.301 hybrid contribution 1.726 -0.471 0.098 1.791 sum -8.412 -4.798 10.710 14.439 Atomic orbital electron populations 1.22187 0.93289 1.03342 1.03167 1.21056 0.96043 0.95646 0.82972 0.88188 1.22781 0.97185 0.84176 0.97733 1.87819 1.70236 1.26686 1.46378 1.22092 0.97609 0.90417 0.88532 1.22116 1.05314 0.95264 0.96174 1.23150 0.93703 1.03634 1.00157 1.23068 0.98759 0.98108 1.00717 1.55289 1.81594 1.19518 1.29677 1.00954 0.73291 0.72718 0.72562 1.93487 1.52507 1.66921 1.84265 1.93491 1.82777 1.63222 1.60027 1.30305 1.14708 1.10796 1.18060 1.20470 0.99204 0.92811 1.05433 1.21066 0.92226 0.99449 0.99530 1.21508 0.96930 0.97676 1.05498 1.18079 0.93849 0.92482 0.89995 1.19885 0.94152 0.92865 1.45362 0.89856 1.26772 1.02144 0.96865 0.92376 1.69785 1.37002 1.05491 1.32292 0.85201 0.77166 0.78872 0.78849 1.17830 1.18584 1.19345 1.21051 0.90862 1.00090 0.98840 0.89352 0.92498 0.91405 0.93478 0.89432 0.93545 0.91774 0.88065 0.87937 0.88021 0.87767 0.88042 0.74108 0.84872 0.84415 0.86971 0.89796 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.32 71.98 0.67 -3.15 16 2 C 0.15 4.07 3.18 44.99 0.14 4.21 16 3 H 0.10 2.68 7.23 -2.39 -0.02 2.66 16 4 C 0.06 1.44 5.73 71.98 0.41 1.86 16 5 O -0.39 -9.71 9.17 -148.98 -1.37 -11.07 16 6 C 0.09 1.86 6.22 71.98 0.45 2.31 16 7 C -0.17 -3.22 6.05 -10.79 -0.07 -3.28 16 8 C -0.17 -2.47 10.18 30.62 0.31 -2.16 16 9 C -0.17 -2.52 10.25 30.62 0.31 -2.21 16 10 N -1.10 -36.01 5.46 -169.39 -0.93 -36.94 16 11 S 2.71 110.05 5.65 -56.49 -0.32 109.73 16 12 O -0.98 -40.40 16.53 -128.00 -2.12 -42.52 16 13 O -1.00 -47.77 17.26 -128.00 -2.21 -49.98 16 14 C -0.65 -29.42 5.81 22.22 0.13 -29.29 16 15 C -0.16 -6.48 8.91 22.46 0.20 -6.28 16 16 C -0.10 -4.17 10.02 22.22 0.22 -3.95 16 17 C -0.20 -9.01 9.80 22.73 0.22 -8.79 16 18 C 0.06 3.11 5.58 -21.29 -0.12 2.99 16 19 C -0.49 -25.84 9.05 23.46 0.21 -25.63 16 20 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 21 C 0.03 1.69 5.14 85.26 0.44 2.13 16 22 N -0.82 -42.11 10.97 21.83 0.24 -41.87 16 23 Si 0.98 37.77 29.60 68.60 2.03 39.80 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 26 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 27 C -0.09 -4.57 8.16 22.73 0.19 -4.38 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.50 7.64 -2.39 -0.02 1.48 16 30 H 0.07 1.62 7.56 -2.38 -0.02 1.60 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.10 7.88 -2.38 -0.02 1.08 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.42 13.21 8.58 -96.73 -0.83 12.38 16 41 H 0.13 4.68 7.60 -2.92 -0.02 4.66 16 42 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 43 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 44 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 45 H 0.11 6.35 5.71 -2.92 -0.02 6.33 16 Total: -1.00 -65.79 387.03 -0.78 -66.56 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: 0.17 Total: 41.92 kcal Atomic # 6 Polarization: -79.36 SS G_CDS: 3.73 Total: -75.63 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -0.69 Total: -78.81 kcal Atomic # 8 Polarization: -97.88 SS G_CDS: -5.69 Total: -103.58 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 16 Polarization: 110.05 SS G_CDS: -0.32 Total: 109.73 kcal Total: -65.79 -0.78 -66.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593654843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.019 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds