Wall clock time and date at job start Tue Mar 31 2020 23:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99951 * 2 1 4 4 C 1.53002 * 109.47033 * 180.02562 * 3 2 1 5 5 N 1.46498 * 110.43404 * 306.38219 * 4 3 2 6 6 S 1.65603 * 120.00335 * 299.57906 * 5 4 3 7 7 O 1.42105 * 106.39960 * 315.65262 * 6 5 4 8 8 O 1.42100 * 106.40338 * 182.73142 * 6 5 4 9 9 C 1.76197 * 107.21806 * 69.18924 * 6 5 4 10 10 C 1.38664 * 119.87707 * 80.72173 * 9 6 5 11 11 C 1.38605 * 120.50592 * 180.02562 * 10 9 6 12 12 C 1.37648 * 120.24563 * 0.25448 * 11 10 9 13 13 C 1.40703 * 119.74366 * 359.47886 * 12 11 10 14 14 C 1.41390 * 120.24305 * 180.26739 * 13 12 11 15 15 H 1.08005 * 120.00147 * 327.30332 * 14 13 12 16 16 C 1.39949 * 119.99898 * 147.30050 * 14 13 12 17 17 N 1.30819 * 119.99853 * 168.59191 * 16 14 13 18 18 Si 1.86799 * 119.99865 * 348.59216 * 16 14 13 19 19 H 1.48497 * 109.47156 * 89.69336 * 18 16 14 20 20 H 1.48500 * 109.47065 * 209.69707 * 18 16 14 21 21 H 1.48504 * 109.47264 * 329.69445 * 18 16 14 22 22 C 1.37600 * 119.87862 * 260.70380 * 9 6 5 23 23 C 1.54894 * 110.60244 * 69.00070 * 4 3 2 24 24 C 1.54884 * 102.75010 * 156.67688 * 23 4 3 25 25 C 1.54272 * 104.19646 * 322.05745 * 24 23 4 26 26 C 1.53878 * 106.59720 * 23.61190 * 25 24 23 27 27 H 1.08998 * 109.47129 * 60.00308 * 1 2 3 28 28 H 1.08994 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46926 * 300.00470 * 1 2 3 30 30 H 1.08992 * 109.47644 * 60.00218 * 3 2 1 31 31 H 1.09001 * 109.46736 * 299.99787 * 3 2 1 32 32 H 0.97007 * 120.00209 * 119.57995 * 5 4 3 33 33 H 1.08005 * 119.74515 * 359.97438 * 10 9 6 34 34 H 1.07999 * 119.88091 * 179.97438 * 11 10 9 35 35 H 1.07999 * 120.12807 * 179.74626 * 12 11 10 36 36 H 0.97000 * 119.99866 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.12725 * 359.97438 * 22 9 6 38 38 H 1.09004 * 110.75418 * 274.99459 * 23 4 3 39 39 H 1.09005 * 110.75230 * 38.35902 * 23 4 3 40 40 H 1.09000 * 110.48711 * 203.38033 * 24 23 4 41 41 H 1.09001 * 110.48660 * 80.73861 * 24 23 4 42 42 H 1.08992 * 110.03125 * 264.32663 * 25 24 23 43 43 H 1.09000 * 110.03161 * 142.89140 * 25 24 23 44 44 H 1.08998 * 110.03181 * 240.71242 * 26 25 24 45 45 H 1.08994 * 110.03400 * 119.28217 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9815 0.3323 1.1042 6 16 3.6404 0.7576 2.6680 7 8 3.9167 2.1474 2.7752 8 8 4.2541 -0.2228 3.4934 9 6 1.9018 0.5774 2.8901 10 6 1.3629 -0.6767 3.1340 11 6 -0.0030 -0.8334 3.3102 12 6 -0.8408 0.2564 3.2394 13 6 -0.3045 1.5346 2.9980 14 6 -1.1548 2.6622 2.9288 15 1 -2.1568 2.5599 2.5389 16 6 -0.6980 3.9109 3.3656 17 7 -1.3892 4.9895 3.1006 18 14 0.8987 4.0373 4.3268 19 1 2.0308 4.2231 3.3839 20 1 0.8292 5.1971 5.2516 21 1 1.1055 2.7921 5.1092 22 6 1.0839 1.6818 2.8212 23 6 4.0372 0.6239 -1.3545 24 6 5.5004 1.1286 -1.4124 25 6 5.4369 2.5438 -0.8014 26 6 4.1876 2.5794 0.0962 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 4.4767 -0.4812 0.9199 33 1 2.0123 -1.5381 3.1863 34 1 -0.4120 -1.8149 3.4992 35 1 -1.9052 0.1315 3.3728 36 1 -1.0724 5.8550 3.4030 37 1 1.5057 2.6578 2.6318 38 1 4.0039 -0.4656 -1.3575 39 1 3.4550 1.0315 -2.1810 40 1 5.8478 1.1740 -2.4445 41 1 6.1496 0.4854 -0.8183 42 1 5.3496 3.2884 -1.5925 43 1 6.3299 2.7338 -0.2060 44 1 3.4940 3.3414 -0.2593 45 1 4.4743 2.7867 1.1271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594792035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:50 Heat of formation + Delta-G solvation = -95.114874 kcal Electronic energy + Delta-G solvation = -30318.231448 eV Core-core repulsion = 26427.657292 eV Total energy + Delta-G solvation = -3890.574156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.40313 -38.14334 -36.74745 -36.53723 -35.40679 -33.73087 -33.04183 -30.72701 -30.44807 -29.05961 -28.70096 -26.06405 -25.39319 -23.86049 -22.24499 -21.27528 -20.57467 -20.22226 -18.72052 -17.80405 -17.24620 -16.65667 -16.34713 -15.64171 -15.40493 -15.14843 -15.08245 -15.03941 -14.71050 -14.44492 -13.80934 -13.43388 -13.22456 -13.10911 -12.77260 -12.42526 -12.23537 -12.08584 -11.89597 -11.85696 -11.69899 -11.53811 -11.36372 -11.24343 -11.05495 -10.97885 -10.89835 -10.85562 -10.74974 -10.43798 -10.37471 -10.06333 -9.95215 -9.72510 -9.31511 -9.14491 -9.04453 -8.24462 -7.75117 -7.02712 -4.65734 0.94776 1.87410 2.42853 3.13793 3.21104 3.26893 3.42672 3.92359 4.03827 4.11063 4.32427 4.60979 4.67487 4.84180 4.98010 5.11028 5.29912 5.33390 5.53220 5.59336 5.63559 5.70807 5.76008 5.81224 5.88217 5.93127 5.95326 5.99694 6.01251 6.10054 6.12148 6.21203 6.28527 6.35696 6.40816 6.48433 6.55039 6.67396 6.88330 7.07981 7.13232 7.26710 7.38441 7.49345 7.59433 7.83982 8.15929 8.39849 8.63317 9.99001 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.006130 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.304745 B = 4566.302986 C = 4838.081905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.372 6.372 3 C 0.025 3.975 4 C 0.187 3.813 5 N -1.095 6.095 6 S 2.681 3.319 7 O -0.966 6.966 8 O -0.975 6.975 9 C -0.609 4.609 10 C -0.123 4.123 11 C -0.102 4.102 12 C -0.158 4.158 13 C 0.076 3.924 14 C -0.450 4.450 15 H 0.093 0.907 16 C 0.087 3.913 17 N -0.809 5.809 18 Si 0.878 3.122 19 H -0.242 1.242 20 H -0.285 1.285 21 H -0.246 1.246 22 C -0.148 4.148 23 C -0.111 4.111 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.167 4.167 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.414 0.586 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.287 0.713 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.410 -6.013 -8.557 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C -0.053 4.053 4 C 0.098 3.902 5 N -0.852 5.852 6 S 2.777 3.223 7 O -0.956 6.956 8 O -0.965 6.965 9 C -0.700 4.700 10 C -0.144 4.144 11 C -0.121 4.121 12 C -0.178 4.178 13 C 0.072 3.928 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.132 4.132 17 N -0.433 5.433 18 Si 0.703 3.297 19 H -0.167 1.167 20 H -0.212 1.212 21 H -0.169 1.169 22 C -0.168 4.168 23 C -0.149 4.149 24 C -0.164 4.164 25 C -0.156 4.156 26 C -0.206 4.206 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.248 0.752 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.973 -5.438 -7.904 13.136 hybrid contribution -0.326 -0.075 0.104 0.351 sum 8.647 -5.513 -7.800 12.884 Atomic orbital electron populations 1.22942 0.81035 1.02102 1.01292 1.87792 1.19654 1.26068 1.95492 1.23415 0.92037 0.86909 1.02915 1.20928 0.91484 0.90334 0.87424 1.55282 1.70900 1.36060 1.22989 1.01927 0.75060 0.73416 0.71930 1.93453 1.84535 1.32405 1.85233 1.93532 1.76219 1.61637 1.65135 1.29843 1.22907 1.00716 1.16544 1.19988 0.95244 0.93757 1.05378 1.20727 0.93486 0.97472 1.00414 1.21306 0.98555 0.93023 1.04936 1.17743 0.91258 0.93488 0.90353 1.19444 1.01381 0.90430 1.36625 0.88859 1.26060 0.98110 0.94866 0.94197 1.69617 1.38237 0.99639 1.35771 0.86830 0.82043 0.79455 0.81370 1.16687 1.21235 1.16904 1.20850 0.94757 0.95950 1.05287 1.22679 0.95771 1.01199 0.95294 1.22405 0.96760 0.96706 1.00504 1.22077 0.98096 0.96888 0.98589 1.23213 0.97361 0.95103 1.04922 0.95376 0.90626 0.91177 0.90346 0.92429 0.75217 0.87522 0.87945 0.87540 0.90227 0.86164 0.90450 0.90243 0.91700 0.91578 0.91902 0.91827 0.90533 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 101.05 1.11 1.48 16 2 O -0.37 -6.07 9.52 -35.23 -0.34 -6.41 16 3 C 0.03 0.41 3.86 37.16 0.14 0.55 16 4 C 0.19 2.65 0.67 -130.16 -0.09 2.57 16 5 N -1.10 -16.25 5.31 1.88 0.01 -16.24 16 6 S 2.68 51.02 5.55 -107.50 -0.60 50.42 16 7 O -0.97 -20.13 13.62 -57.17 -0.78 -20.91 16 8 O -0.97 -20.12 17.54 -57.17 -1.00 -21.12 16 9 C -0.61 -12.59 3.95 -39.66 -0.16 -12.75 16 10 C -0.12 -2.40 9.48 -39.29 -0.37 -2.77 16 11 C -0.10 -1.92 9.93 -39.66 -0.39 -2.31 16 12 C -0.16 -3.27 8.54 -38.87 -0.33 -3.60 16 13 C 0.08 1.74 3.56 -106.83 -0.38 1.36 16 14 C -0.45 -11.29 9.60 -37.74 -0.36 -11.65 16 15 H 0.09 2.43 8.06 -52.48 -0.42 2.00 16 16 C 0.09 2.20 5.47 -17.34 -0.09 2.10 16 17 N -0.81 -20.84 13.93 55.55 0.77 -20.07 16 18 Si 0.88 20.70 24.44 -169.99 -4.15 16.55 16 19 H -0.24 -5.66 6.55 56.52 0.37 -5.29 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.25 -5.96 6.83 56.52 0.39 -5.57 16 22 C -0.15 -3.32 3.55 -38.87 -0.14 -3.46 16 23 C -0.11 -1.23 5.76 -24.74 -0.14 -1.37 16 24 C -0.13 -1.26 6.79 -25.07 -0.17 -1.43 16 25 C -0.12 -1.34 6.80 -25.61 -0.17 -1.52 16 26 C -0.17 -2.39 5.82 -25.61 -0.15 -2.54 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.30 4.27 -51.93 -0.22 1.08 16 30 H 0.08 1.47 3.78 -51.93 -0.20 1.28 16 31 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 32 H 0.41 5.09 8.61 -34.47 -0.30 4.79 16 33 H 0.11 1.91 7.83 -52.48 -0.41 1.50 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.12 2.82 3.49 -52.49 -0.18 2.63 16 38 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 39 H 0.08 0.83 7.99 -51.93 -0.41 0.42 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.06 7.84 -51.93 -0.41 0.65 16 45 H 0.12 1.98 4.73 -51.93 -0.25 1.73 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -28.40 351.17 -8.69 -37.09 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.20 Total: 10.73 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: -1.70 Total: -35.34 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.78 Total: -36.31 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -2.12 Total: -48.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.15 Total: 16.55 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.60 Total: 50.42 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.40 -8.69 -37.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594792035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.027 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds