Wall clock time and date at job start Tue Mar 31 2020 23:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99951 * 2 1 4 4 C 1.53002 * 109.47033 * 180.02562 * 3 2 1 5 5 N 1.46498 * 110.43404 * 306.38219 * 4 3 2 6 6 S 1.65603 * 120.00335 * 299.57906 * 5 4 3 7 7 O 1.42105 * 106.39960 * 315.65262 * 6 5 4 8 8 O 1.42100 * 106.40338 * 182.73142 * 6 5 4 9 9 C 1.76197 * 107.21806 * 69.18924 * 6 5 4 10 10 C 1.38664 * 119.87707 * 80.72173 * 9 6 5 11 11 C 1.38605 * 120.50592 * 180.02562 * 10 9 6 12 12 C 1.37648 * 120.24563 * 0.25448 * 11 10 9 13 13 C 1.40703 * 119.74366 * 359.47886 * 12 11 10 14 14 C 1.41390 * 120.24305 * 180.26739 * 13 12 11 15 15 H 1.08005 * 120.00147 * 327.30332 * 14 13 12 16 16 C 1.39949 * 119.99898 * 147.30050 * 14 13 12 17 17 N 1.30819 * 119.99853 * 168.59191 * 16 14 13 18 18 Si 1.86799 * 119.99865 * 348.59216 * 16 14 13 19 19 H 1.48497 * 109.47156 * 89.69336 * 18 16 14 20 20 H 1.48500 * 109.47065 * 209.69707 * 18 16 14 21 21 H 1.48504 * 109.47264 * 329.69445 * 18 16 14 22 22 C 1.37600 * 119.87862 * 260.70380 * 9 6 5 23 23 C 1.54894 * 110.60244 * 69.00070 * 4 3 2 24 24 C 1.54884 * 102.75010 * 156.67688 * 23 4 3 25 25 C 1.54272 * 104.19646 * 322.05745 * 24 23 4 26 26 C 1.53878 * 106.59720 * 23.61190 * 25 24 23 27 27 H 1.08998 * 109.47129 * 60.00308 * 1 2 3 28 28 H 1.08994 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46926 * 300.00470 * 1 2 3 30 30 H 1.08992 * 109.47644 * 60.00218 * 3 2 1 31 31 H 1.09001 * 109.46736 * 299.99787 * 3 2 1 32 32 H 0.97007 * 120.00209 * 119.57995 * 5 4 3 33 33 H 1.08005 * 119.74515 * 359.97438 * 10 9 6 34 34 H 1.07999 * 119.88091 * 179.97438 * 11 10 9 35 35 H 1.07999 * 120.12807 * 179.74626 * 12 11 10 36 36 H 0.97000 * 119.99866 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.12725 * 359.97438 * 22 9 6 38 38 H 1.09004 * 110.75418 * 274.99459 * 23 4 3 39 39 H 1.09005 * 110.75230 * 38.35902 * 23 4 3 40 40 H 1.09000 * 110.48711 * 203.38033 * 24 23 4 41 41 H 1.09001 * 110.48660 * 80.73861 * 24 23 4 42 42 H 1.08992 * 110.03125 * 264.32663 * 25 24 23 43 43 H 1.09000 * 110.03161 * 142.89140 * 25 24 23 44 44 H 1.08998 * 110.03181 * 240.71242 * 26 25 24 45 45 H 1.08994 * 110.03400 * 119.28217 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9815 0.3323 1.1042 6 16 3.6404 0.7576 2.6680 7 8 3.9167 2.1474 2.7752 8 8 4.2541 -0.2228 3.4934 9 6 1.9018 0.5774 2.8901 10 6 1.3629 -0.6767 3.1340 11 6 -0.0030 -0.8334 3.3102 12 6 -0.8408 0.2564 3.2394 13 6 -0.3045 1.5346 2.9980 14 6 -1.1548 2.6622 2.9288 15 1 -2.1568 2.5599 2.5389 16 6 -0.6980 3.9109 3.3656 17 7 -1.3892 4.9895 3.1006 18 14 0.8987 4.0373 4.3268 19 1 2.0308 4.2231 3.3839 20 1 0.8292 5.1971 5.2516 21 1 1.1055 2.7921 5.1092 22 6 1.0839 1.6818 2.8212 23 6 4.0372 0.6239 -1.3545 24 6 5.5004 1.1286 -1.4124 25 6 5.4369 2.5438 -0.8014 26 6 4.1876 2.5794 0.0962 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 4.4767 -0.4812 0.9199 33 1 2.0123 -1.5381 3.1863 34 1 -0.4120 -1.8149 3.4992 35 1 -1.9052 0.1315 3.3728 36 1 -1.0724 5.8550 3.4030 37 1 1.5057 2.6578 2.6318 38 1 4.0039 -0.4656 -1.3575 39 1 3.4550 1.0315 -2.1810 40 1 5.8478 1.1740 -2.4445 41 1 6.1496 0.4854 -0.8183 42 1 5.3496 3.2884 -1.5925 43 1 6.3299 2.7338 -0.2060 44 1 3.4940 3.3414 -0.2593 45 1 4.4743 2.7867 1.1271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594792035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:49 Heat of formation + Delta-G solvation = -114.936280 kcal Electronic energy + Delta-G solvation = -30319.090968 eV Core-core repulsion = 26427.657292 eV Total energy + Delta-G solvation = -3891.433677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59100 -39.72741 -38.30559 -37.79138 -36.99016 -35.56403 -34.17175 -32.48256 -32.07037 -30.26125 -29.66086 -27.32801 -27.12315 -25.02728 -23.90585 -22.97329 -21.48248 -21.42751 -20.19846 -19.51311 -18.63653 -18.37463 -17.57123 -17.04519 -16.80220 -16.63010 -16.42256 -16.40683 -16.13364 -15.72914 -15.48390 -15.04515 -14.59211 -14.33755 -14.19434 -14.03728 -13.67593 -13.62123 -13.33133 -13.18814 -13.16508 -13.01095 -12.91653 -12.71542 -12.67937 -12.23913 -12.17990 -12.11900 -11.92465 -11.81504 -11.76021 -11.45356 -11.39407 -11.15165 -11.06045 -10.44713 -10.42433 -9.87664 -9.45002 -8.92517 -6.55768 -0.55644 0.21387 0.71916 1.24575 1.29665 1.34339 2.00048 2.01490 2.47471 2.67949 2.84023 3.32017 3.36807 3.59046 3.68096 3.98752 4.12221 4.18492 4.30840 4.34641 4.49762 4.56679 4.57494 4.61467 4.64057 4.72341 4.73704 4.76997 4.84482 4.85513 4.92549 5.08209 5.09941 5.16908 5.18594 5.21230 5.36989 5.41287 5.42538 5.44870 5.59040 5.71523 5.75440 6.13198 6.17563 6.26530 6.30756 6.60649 6.77353 8.15574 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.006130 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.304745 B = 4566.302986 C = 4838.081905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.371 6.371 3 C 0.021 3.979 4 C 0.184 3.816 5 N -1.077 6.077 6 S 2.694 3.306 7 O -0.988 6.988 8 O -0.990 6.990 9 C -0.625 4.625 10 C -0.107 4.107 11 C -0.098 4.098 12 C -0.151 4.151 13 C 0.061 3.939 14 C -0.475 4.475 15 H 0.071 0.929 16 C 0.063 3.937 17 N -0.848 5.848 18 Si 0.908 3.092 19 H -0.248 1.248 20 H -0.275 1.275 21 H -0.257 1.257 22 C -0.149 4.149 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.176 4.176 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.428 0.572 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.118 0.882 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 -8.814 -9.943 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.289 6.289 3 C -0.057 4.057 4 C 0.095 3.905 5 N -0.838 5.838 6 S 2.788 3.212 7 O -0.978 6.978 8 O -0.980 6.980 9 C -0.715 4.715 10 C -0.127 4.127 11 C -0.117 4.117 12 C -0.171 4.171 13 C 0.058 3.942 14 C -0.505 4.505 15 H 0.089 0.911 16 C -0.152 4.152 17 N -0.476 5.476 18 Si 0.733 3.267 19 H -0.173 1.173 20 H -0.202 1.202 21 H -0.182 1.182 22 C -0.169 4.169 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.215 4.215 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.676 -8.256 -9.275 16.376 hybrid contribution -0.787 0.547 0.477 1.070 sum 9.889 -7.710 -8.798 15.318 Atomic orbital electron populations 1.22967 0.81047 1.03003 1.00576 1.87773 1.19653 1.26037 1.95425 1.23454 0.93430 0.86735 1.02075 1.21080 0.90210 0.90498 0.88679 1.54924 1.70493 1.36843 1.21569 1.01460 0.74193 0.72760 0.72803 1.93450 1.84484 1.33801 1.86026 1.93505 1.76137 1.61885 1.66512 1.30155 1.24024 1.00683 1.16606 1.20478 0.96069 0.93967 1.02230 1.21123 0.92975 0.98687 0.98875 1.21547 0.99595 0.92576 1.03360 1.17812 0.91443 0.93938 0.90997 1.19395 1.00939 0.91537 1.38639 0.91110 1.26359 0.99203 0.94916 0.94689 1.69634 1.39611 1.00054 1.38256 0.86373 0.80592 0.79042 0.80668 1.17251 1.20176 1.18158 1.20697 0.94693 0.95978 1.05571 1.22691 0.96514 1.01797 0.93174 1.22414 0.95986 0.95446 1.01926 1.22092 0.96355 0.98574 0.98468 1.23232 0.98875 0.95229 1.04120 0.94406 0.88800 0.93767 0.93349 0.91264 0.73415 0.85071 0.83869 0.86377 0.89788 0.87800 0.89350 0.89182 0.89335 0.90996 0.90463 0.91780 0.90938 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.87 16 2 O -0.37 -11.31 9.52 -148.98 -1.42 -12.73 16 3 C 0.02 0.66 3.86 71.98 0.28 0.94 16 4 C 0.18 4.87 0.67 4.68 0.00 4.87 16 5 N -1.08 -29.68 5.31 -147.98 -0.79 -30.47 16 6 S 2.69 99.56 5.55 -56.49 -0.31 99.24 16 7 O -0.99 -41.46 13.62 -128.00 -1.74 -43.20 16 8 O -0.99 -39.02 17.54 -128.00 -2.24 -41.26 16 9 C -0.62 -25.12 3.95 22.22 0.09 -25.03 16 10 C -0.11 -3.86 9.48 22.46 0.21 -3.64 16 11 C -0.10 -3.37 9.93 22.22 0.22 -3.15 16 12 C -0.15 -6.04 8.54 22.73 0.19 -5.84 16 13 C 0.06 2.86 3.56 -21.29 -0.08 2.78 16 14 C -0.47 -24.85 9.60 23.46 0.23 -24.63 16 15 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 16 C 0.06 3.34 5.47 85.26 0.47 3.80 16 17 N -0.85 -45.89 13.93 21.83 0.30 -45.59 16 18 Si 0.91 43.98 24.44 68.60 1.68 45.65 16 19 H -0.25 -12.01 6.55 99.48 0.65 -11.36 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -12.74 6.83 99.48 0.68 -12.06 16 22 C -0.15 -6.75 3.55 22.73 0.08 -6.67 16 23 C -0.10 -1.92 5.76 31.89 0.18 -1.74 16 24 C -0.12 -1.94 6.79 31.67 0.22 -1.72 16 25 C -0.12 -2.37 6.80 31.32 0.21 -2.16 16 26 C -0.18 -4.87 5.82 31.32 0.18 -4.69 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.04 1.61 4.27 -2.38 -0.01 1.60 16 30 H 0.05 1.84 3.78 -2.39 -0.01 1.83 16 31 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 32 H 0.43 9.21 8.61 -96.74 -0.83 8.37 16 33 H 0.13 4.14 7.83 -2.91 -0.02 4.11 16 34 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 37 H 0.10 5.05 3.49 -2.91 -0.01 5.04 16 38 H 0.09 1.50 8.07 -2.38 -0.02 1.48 16 39 H 0.09 1.54 7.99 -2.38 -0.02 1.53 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.01 7.84 -2.39 -0.02 1.99 16 45 H 0.09 3.09 4.73 -2.39 -0.01 3.08 16 Total: -1.00 -63.02 351.17 -0.68 -63.70 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.11 Total: 29.63 kcal Atomic # 6 Polarization: -68.73 SS G_CDS: 3.74 Total: -64.99 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -0.48 Total: -76.05 kcal Atomic # 8 Polarization: -91.78 SS G_CDS: -5.41 Total: -97.19 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.68 Total: 45.65 kcal Atomic # 16 Polarization: 99.56 SS G_CDS: -0.31 Total: 99.24 kcal Total: -63.02 -0.68 -63.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594792035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.233 kcal (2) G-P(sol) polarization free energy of solvation -63.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds