Wall clock time and date at job start Tue Mar 31 2020 23:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99533 * 2 1 4 4 C 1.50694 * 109.47151 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.99937 * 5.54597 * 4 3 2 6 6 C 1.38214 * 119.99952 * 179.97438 * 5 4 3 7 7 C 1.38254 * 119.99907 * 359.96089 * 6 5 4 8 8 C 1.38204 * 120.00486 * 359.97438 * 7 6 5 9 9 C 1.38210 * 120.00424 * 185.26719 * 4 3 2 10 10 S 1.76207 * 119.99617 * 0.02562 * 9 4 3 11 11 O 1.42099 * 106.40258 * 46.42532 * 10 9 4 12 12 O 1.42102 * 106.39818 * 179.34209 * 10 9 4 13 13 N 1.65597 * 107.21464 * 292.88173 * 10 9 4 14 14 C 1.46921 * 120.62946 * 97.34541 * 13 10 9 15 15 C 1.53194 * 108.77744 * 126.36605 * 14 13 10 16 16 C 1.53035 * 109.31170 * 54.63301 * 15 14 13 17 17 C 1.53034 * 109.53990 * 298.63340 * 16 15 14 18 18 H 1.09001 * 109.49860 * 301.38403 * 17 16 15 19 19 C 1.50704 * 109.50124 * 181.31654 * 17 16 15 20 20 H 1.07997 * 119.99685 * 275.10253 * 19 17 16 21 21 C 1.37878 * 119.99769 * 95.09407 * 19 17 16 22 22 N 1.31510 * 119.99816 * 183.21742 * 21 19 17 23 23 Si 1.86800 * 120.00091 * 3.21502 * 21 19 17 24 24 H 1.48505 * 109.46841 * 84.73107 * 23 21 19 25 25 H 1.48497 * 109.47230 * 204.72906 * 23 21 19 26 26 H 1.48502 * 109.47401 * 324.73343 * 23 21 19 27 27 C 1.46927 * 120.63310 * 277.05878 * 13 10 9 28 28 H 1.08997 * 109.46885 * 60.00223 * 1 2 3 29 29 H 1.08998 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47379 * 299.99922 * 1 2 3 31 31 H 1.09003 * 109.46813 * 59.99998 * 3 2 1 32 32 H 1.09000 * 109.47415 * 299.99814 * 3 2 1 33 33 H 1.08001 * 119.99650 * 359.97438 * 5 4 3 34 34 H 1.07996 * 119.99667 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.99555 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.00563 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.58791 * 246.15456 * 14 13 10 38 38 H 1.09004 * 109.58714 * 6.57494 * 14 13 10 39 39 H 1.09000 * 109.49655 * 174.58907 * 15 14 13 40 40 H 1.09002 * 109.49705 * 294.68017 * 15 14 13 41 41 H 1.08996 * 109.45985 * 58.65752 * 16 15 14 42 42 H 1.09004 * 109.45806 * 178.62905 * 16 15 14 43 43 H 0.97006 * 119.99710 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.58487 * 353.42617 * 27 13 10 45 45 H 1.09000 * 109.58471 * 113.84291 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1867 0.0006 5 6 4.1076 -0.0559 -0.1146 6 6 5.4855 -0.1649 -0.1146 7 6 6.2685 0.9687 -0.0001 8 6 5.6737 2.2110 0.1138 9 6 4.2954 2.3203 0.1106 10 16 3.5369 3.9046 0.2508 11 8 2.5089 3.7727 1.2229 12 8 4.5944 4.8474 0.3610 13 7 2.7814 4.2154 -1.1896 14 6 1.3437 3.9596 -1.3514 15 6 0.6698 5.2371 -1.8618 16 6 1.3725 5.7046 -3.1384 17 6 2.8375 6.0217 -2.8295 18 1 2.8886 6.7924 -2.0604 19 6 3.5204 6.5127 -4.0799 20 1 3.9289 5.8046 -4.7856 21 6 3.6236 7.8660 -4.3229 22 7 4.1628 8.2935 -5.4436 23 14 2.9974 9.0921 -3.0604 24 1 4.0497 9.3337 -2.0408 25 1 2.6606 10.3705 -3.7367 26 1 1.7842 8.5467 -2.4001 27 6 3.5348 4.7582 -2.3283 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.4959 -0.9414 -0.2047 34 1 5.9503 -1.1356 -0.2042 35 1 7.3452 0.8836 -0.0005 36 1 6.2854 3.0966 0.2028 37 1 1.1945 3.1550 -2.0714 38 1 0.9124 3.6776 -0.3908 39 1 -0.3791 5.0339 -2.0774 40 1 0.7413 6.0149 -1.1015 41 1 1.3221 4.9168 -3.8899 42 1 0.8795 6.6000 -3.5172 43 1 4.2358 9.2456 -5.6144 44 1 4.5488 5.0031 -2.0122 45 1 3.5680 4.0201 -3.1297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:57 Heat of formation + Delta-G solvation = -89.545602 kcal Electronic energy + Delta-G solvation = -28972.594793 eV Core-core repulsion = 25082.262139 eV Total energy + Delta-G solvation = -3890.332654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.71201 -38.15036 -37.76688 -37.11916 -35.71089 -33.29899 -32.39177 -31.59608 -31.32051 -30.62783 -27.53955 -25.88484 -25.11596 -24.03422 -23.23983 -21.87858 -21.63364 -19.59682 -18.77352 -17.90892 -17.45023 -16.86508 -16.58394 -16.28077 -16.09798 -15.61671 -14.93297 -14.80469 -14.58185 -14.33783 -14.12538 -13.87026 -13.72245 -13.24890 -13.03336 -12.94853 -12.78744 -12.58639 -12.46064 -12.28924 -12.03659 -11.92046 -11.61373 -11.58415 -11.39420 -11.21244 -11.07675 -10.76512 -10.60457 -10.36826 -10.09853 -10.03652 -9.78852 -9.65704 -9.46698 -9.06249 -8.91906 -8.61448 -8.47849 -6.11932 -4.12291 0.43124 0.73626 1.15691 3.03221 3.30872 3.35591 3.38317 3.41170 3.43973 3.85673 4.35292 4.40830 4.46592 4.75373 4.82442 4.88214 5.03376 5.09437 5.14703 5.20460 5.22123 5.28640 5.33010 5.38186 5.43618 5.49488 5.57305 5.71883 5.80461 5.88214 5.98178 6.03734 6.06397 6.19383 6.21510 6.33750 6.37759 6.51372 6.68212 6.69314 6.82670 6.84912 6.96536 7.22590 7.38314 7.72129 8.44910 8.91822 9.51215 11.00761 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.004274 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.971610 B = 6550.282320 C = 7314.044246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.048 3.952 4 C 0.013 3.987 5 C -0.122 4.122 6 C -0.069 4.069 7 C -0.143 4.143 8 C -0.019 4.019 9 C -0.672 4.672 10 S 2.681 3.319 11 O -0.965 6.965 12 O -0.950 6.950 13 N -0.994 5.994 14 C 0.116 3.884 15 C -0.135 4.135 16 C -0.110 4.110 17 C 0.007 3.993 18 H 0.037 0.963 19 C -0.513 4.513 20 H 0.076 0.924 21 C 0.076 3.924 22 N -0.897 5.897 23 Si 0.872 3.128 24 H -0.273 1.273 25 H -0.290 1.290 26 H -0.263 1.263 27 C 0.132 3.868 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.265 0.735 44 H 0.085 0.915 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -17.299 11.070 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.303 6.303 3 C -0.028 4.028 4 C 0.012 3.988 5 C -0.141 4.141 6 C -0.087 4.087 7 C -0.161 4.161 8 C -0.038 4.038 9 C -0.757 4.757 10 S 2.772 3.228 11 O -0.956 6.956 12 O -0.940 6.940 13 N -0.834 5.834 14 C -0.010 4.010 15 C -0.174 4.174 16 C -0.148 4.148 17 C -0.013 4.013 18 H 0.055 0.945 19 C -0.552 4.552 20 H 0.094 0.906 21 C -0.127 4.127 22 N -0.535 5.535 23 Si 0.700 3.300 24 H -0.199 1.199 25 H -0.216 1.216 26 H -0.188 1.188 27 C 0.008 3.992 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.948 -16.789 11.696 20.839 hybrid contribution -0.191 0.241 0.140 0.338 sum -4.139 -16.548 11.836 20.762 Atomic orbital electron populations 1.22814 0.80266 1.02996 1.00712 1.87793 1.20244 1.26554 1.95694 1.22344 0.89904 0.86680 1.03908 1.19251 0.93610 0.92956 0.92975 1.21104 0.94721 0.97646 1.00623 1.21477 0.93903 0.98825 0.94501 1.21309 1.00415 0.92521 1.01901 1.20977 0.92274 0.99101 0.91477 1.30871 1.04646 1.21618 1.18612 1.02302 0.73499 0.73839 0.73118 1.93504 1.57120 1.87071 1.57866 1.93583 1.56636 1.58404 1.85382 1.57754 1.16921 1.77963 1.30784 1.21617 0.79466 0.98557 1.01315 1.21992 0.98657 0.96732 1.00069 1.21803 0.97915 1.00463 0.94620 1.19350 0.92091 0.92898 0.97001 0.94530 1.20864 1.37211 0.92668 1.04418 0.90627 1.25017 0.94287 0.98315 0.95056 1.69893 1.44482 1.14981 1.24101 0.86929 0.80344 0.80675 0.82082 1.19854 1.21592 1.18794 1.21779 0.94870 0.96850 0.85682 0.93516 0.89341 0.93498 0.88052 0.89884 0.84290 0.85270 0.84997 0.83649 0.91517 0.89709 0.91722 0.92031 0.92574 0.92482 0.92546 0.89711 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.38 9.20 -35.23 -0.32 -4.70 16 3 C 0.05 0.59 4.34 36.00 0.16 0.75 16 4 C 0.01 0.18 5.87 -104.62 -0.61 -0.43 16 5 C -0.12 -1.45 9.38 -39.58 -0.37 -1.82 16 6 C -0.07 -0.71 10.05 -39.58 -0.40 -1.11 16 7 C -0.14 -1.56 10.05 -39.59 -0.40 -1.96 16 8 C -0.02 -0.25 9.55 -39.58 -0.38 -0.63 16 9 C -0.67 -9.76 5.91 -39.58 -0.23 -9.99 16 10 S 2.68 44.44 5.12 -107.50 -0.55 43.89 16 11 O -0.97 -16.42 13.96 -57.17 -0.80 -17.22 16 12 O -0.95 -18.44 15.77 -57.17 -0.90 -19.35 16 13 N -0.99 -16.40 3.26 -113.77 -0.37 -16.77 16 14 C 0.12 1.63 4.40 -3.71 -0.02 1.61 16 15 C -0.14 -2.11 6.08 -26.61 -0.16 -2.27 16 16 C -0.11 -2.12 5.15 -26.70 -0.14 -2.25 16 17 C 0.01 0.16 1.87 -91.87 -0.17 -0.01 16 18 H 0.04 0.86 5.37 -51.93 -0.28 0.58 16 19 C -0.51 -13.64 8.87 -34.44 -0.31 -13.94 16 20 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 21 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 23 Si 0.87 21.36 26.94 -169.99 -4.58 16.78 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.26 -6.12 6.89 56.52 0.39 -5.73 16 27 C 0.13 2.51 5.69 -3.93 -0.02 2.49 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 1.31 6.07 -51.93 -0.32 1.00 16 32 H 0.08 0.96 4.51 -51.93 -0.23 0.73 16 33 H 0.14 1.47 7.02 -52.49 -0.37 1.11 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 1.84 7.33 -52.48 -0.38 1.46 16 37 H 0.07 0.80 7.15 -51.93 -0.37 0.43 16 38 H 0.08 1.06 5.99 -51.93 -0.31 0.75 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 1.66 7.10 -51.93 -0.37 1.29 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -32.58 361.16 -9.78 -42.36 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.43 Total: 1.67 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.04 Total: -26.21 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.40 Total: -42.67 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -2.02 Total: -41.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.58 Total: 16.78 kcal Atomic # 16 Polarization: 44.44 SS G_CDS: -0.55 Total: 43.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.58 -9.78 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.185 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds