Wall clock time and date at job start Tue Mar 31 2020 23:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99533 * 2 1 4 4 C 1.50694 * 109.47151 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.99937 * 5.54597 * 4 3 2 6 6 C 1.38214 * 119.99952 * 179.97438 * 5 4 3 7 7 C 1.38254 * 119.99907 * 359.96089 * 6 5 4 8 8 C 1.38204 * 120.00486 * 359.97438 * 7 6 5 9 9 C 1.38210 * 120.00424 * 185.26719 * 4 3 2 10 10 S 1.76207 * 119.99617 * 0.02562 * 9 4 3 11 11 O 1.42099 * 106.40258 * 46.42532 * 10 9 4 12 12 O 1.42102 * 106.39818 * 179.34209 * 10 9 4 13 13 N 1.65597 * 107.21464 * 292.88173 * 10 9 4 14 14 C 1.46921 * 120.62946 * 97.34541 * 13 10 9 15 15 C 1.53194 * 108.77744 * 126.36605 * 14 13 10 16 16 C 1.53035 * 109.31170 * 54.63301 * 15 14 13 17 17 C 1.53034 * 109.53990 * 298.63340 * 16 15 14 18 18 H 1.09001 * 109.49860 * 301.38403 * 17 16 15 19 19 C 1.50704 * 109.50124 * 181.31654 * 17 16 15 20 20 H 1.07997 * 119.99685 * 275.10253 * 19 17 16 21 21 C 1.37878 * 119.99769 * 95.09407 * 19 17 16 22 22 N 1.31510 * 119.99816 * 183.21742 * 21 19 17 23 23 Si 1.86800 * 120.00091 * 3.21502 * 21 19 17 24 24 H 1.48505 * 109.46841 * 84.73107 * 23 21 19 25 25 H 1.48497 * 109.47230 * 204.72906 * 23 21 19 26 26 H 1.48502 * 109.47401 * 324.73343 * 23 21 19 27 27 C 1.46927 * 120.63310 * 277.05878 * 13 10 9 28 28 H 1.08997 * 109.46885 * 60.00223 * 1 2 3 29 29 H 1.08998 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47379 * 299.99922 * 1 2 3 31 31 H 1.09003 * 109.46813 * 59.99998 * 3 2 1 32 32 H 1.09000 * 109.47415 * 299.99814 * 3 2 1 33 33 H 1.08001 * 119.99650 * 359.97438 * 5 4 3 34 34 H 1.07996 * 119.99667 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.99555 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.00563 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.58791 * 246.15456 * 14 13 10 38 38 H 1.09004 * 109.58714 * 6.57494 * 14 13 10 39 39 H 1.09000 * 109.49655 * 174.58907 * 15 14 13 40 40 H 1.09002 * 109.49705 * 294.68017 * 15 14 13 41 41 H 1.08996 * 109.45985 * 58.65752 * 16 15 14 42 42 H 1.09004 * 109.45806 * 178.62905 * 16 15 14 43 43 H 0.97006 * 119.99710 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.58487 * 353.42617 * 27 13 10 45 45 H 1.09000 * 109.58471 * 113.84291 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1867 0.0006 5 6 4.1076 -0.0559 -0.1146 6 6 5.4855 -0.1649 -0.1146 7 6 6.2685 0.9687 -0.0001 8 6 5.6737 2.2110 0.1138 9 6 4.2954 2.3203 0.1106 10 16 3.5369 3.9046 0.2508 11 8 2.5089 3.7727 1.2229 12 8 4.5944 4.8474 0.3610 13 7 2.7814 4.2154 -1.1896 14 6 1.3437 3.9596 -1.3514 15 6 0.6698 5.2371 -1.8618 16 6 1.3725 5.7046 -3.1384 17 6 2.8375 6.0217 -2.8295 18 1 2.8886 6.7924 -2.0604 19 6 3.5204 6.5127 -4.0799 20 1 3.9289 5.8046 -4.7856 21 6 3.6236 7.8660 -4.3229 22 7 4.1628 8.2935 -5.4436 23 14 2.9974 9.0921 -3.0604 24 1 4.0497 9.3337 -2.0408 25 1 2.6606 10.3705 -3.7367 26 1 1.7842 8.5467 -2.4001 27 6 3.5348 4.7582 -2.3283 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.4959 -0.9414 -0.2047 34 1 5.9503 -1.1356 -0.2042 35 1 7.3452 0.8836 -0.0005 36 1 6.2854 3.0966 0.2028 37 1 1.1945 3.1550 -2.0714 38 1 0.9124 3.6776 -0.3908 39 1 -0.3791 5.0339 -2.0774 40 1 0.7413 6.0149 -1.1015 41 1 1.3221 4.9168 -3.8899 42 1 0.8795 6.6000 -3.5172 43 1 4.2358 9.2456 -5.6144 44 1 4.5488 5.0031 -2.0122 45 1 3.5680 4.0201 -3.1297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594800659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:56 Heat of formation + Delta-G solvation = -111.639280 kcal Electronic energy + Delta-G solvation = -28973.552847 eV Core-core repulsion = 25082.262139 eV Total energy + Delta-G solvation = -3891.290708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61604 -39.53196 -38.77731 -38.31186 -37.07566 -35.15101 -33.44059 -33.04469 -32.27975 -32.19746 -28.30406 -27.23780 -26.38491 -25.42488 -24.21200 -23.26327 -22.69099 -21.14984 -20.02968 -19.30595 -18.73915 -18.52681 -17.58920 -17.19547 -16.99439 -16.81250 -16.45862 -15.83285 -15.71426 -15.50937 -15.36513 -15.27279 -14.81232 -14.60085 -14.56405 -14.35687 -14.18422 -13.76648 -13.49683 -13.41196 -13.24812 -13.09831 -13.03107 -12.91597 -12.83461 -12.49058 -12.34857 -12.22442 -11.88418 -11.83993 -11.62511 -11.45093 -11.34273 -10.93575 -10.83838 -10.65918 -10.41404 -9.94484 -9.79341 -8.28334 -6.30329 -0.79110 -0.26224 0.24256 1.33126 1.36841 1.44691 1.80787 2.34905 2.41857 2.59921 2.66201 3.08363 3.17627 3.55352 3.68964 3.87593 4.00268 4.09853 4.15123 4.19505 4.29945 4.31650 4.35913 4.46005 4.50519 4.60161 4.61246 4.67322 4.68908 4.72035 4.88573 4.89327 4.91003 4.97600 5.07710 5.10811 5.17010 5.22437 5.30011 5.35448 5.54839 5.57295 5.70452 5.80459 5.83427 6.07095 6.31961 6.76912 7.35602 8.87968 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.004274 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.971610 B = 6550.282320 C = 7314.044246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.394 6.394 3 C 0.048 3.952 4 C -0.001 4.001 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.141 4.141 8 C -0.041 4.041 9 C -0.682 4.682 10 S 2.688 3.312 11 O -0.973 6.973 12 O -0.989 6.989 13 N -0.996 5.996 14 C 0.108 3.892 15 C -0.132 4.132 16 C -0.107 4.107 17 C 0.000 4.000 18 H 0.022 0.978 19 C -0.508 4.508 20 H 0.045 0.955 21 C 0.021 3.979 22 N -0.945 5.945 23 Si 0.924 3.076 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.244 1.244 27 C 0.142 3.858 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.265 0.735 44 H 0.071 0.929 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 -20.059 12.345 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.314 6.314 3 C -0.028 4.028 4 C -0.003 4.003 5 C -0.147 4.147 6 C -0.076 4.076 7 C -0.160 4.160 8 C -0.060 4.060 9 C -0.771 4.771 10 S 2.784 3.216 11 O -0.964 6.964 12 O -0.979 6.979 13 N -0.835 5.835 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.145 4.145 17 C -0.021 4.021 18 H 0.040 0.960 19 C -0.547 4.547 20 H 0.063 0.937 21 C -0.177 4.177 22 N -0.585 5.585 23 Si 0.749 3.251 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.167 1.167 27 C 0.017 3.983 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.262 -19.527 12.988 24.035 hybrid contribution 0.246 0.902 -0.253 0.968 sum -5.016 -18.625 12.736 23.114 Atomic orbital electron populations 1.23073 0.78683 1.04554 1.01441 1.87772 1.21975 1.25845 1.95772 1.22280 0.89490 0.87305 1.03762 1.19478 0.94306 0.93234 0.93284 1.21388 0.95738 0.97369 1.00227 1.21949 0.93338 1.00268 0.92041 1.21686 1.02132 0.91605 1.00554 1.21176 0.92024 1.00365 0.92449 1.30400 1.05217 1.20192 1.21303 1.01727 0.72897 0.74210 0.72806 1.93486 1.57413 1.87474 1.58006 1.93530 1.57799 1.60664 1.85914 1.57602 1.17994 1.78328 1.29614 1.21926 0.77789 0.98679 1.03239 1.21976 1.00521 0.97047 0.97522 1.21645 0.95675 1.00253 0.96912 1.19378 0.94259 0.93949 0.94512 0.95966 1.21167 1.36116 0.92086 1.05290 0.93657 1.25736 0.95025 1.00280 0.96634 1.70019 1.47043 1.15298 1.26184 0.86090 0.80444 0.78727 0.79854 1.20262 1.21230 1.16725 1.21382 0.94149 0.95897 0.86830 0.92457 0.87472 0.93108 0.88947 0.89178 0.82959 0.81463 0.82024 0.84117 0.88754 0.87702 0.87973 0.93044 0.91819 0.94028 0.92608 0.91097 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.39 -7.95 9.20 -148.98 -1.37 -9.32 16 3 C 0.05 1.08 4.34 71.23 0.31 1.39 16 4 C 0.00 -0.04 5.87 -19.87 -0.12 -0.15 16 5 C -0.13 -2.68 9.38 22.27 0.21 -2.47 16 6 C -0.06 -0.99 10.05 22.27 0.22 -0.76 16 7 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16 8 C -0.04 -1.05 9.55 22.27 0.21 -0.84 16 9 C -0.68 -19.21 5.91 22.27 0.13 -19.08 16 10 S 2.69 88.42 5.12 -56.49 -0.29 88.13 16 11 O -0.97 -32.38 13.96 -128.00 -1.79 -34.17 16 12 O -0.99 -39.37 15.77 -128.00 -2.02 -41.39 16 13 N -1.00 -31.85 3.26 -513.84 -1.67 -33.53 16 14 C 0.11 2.74 4.40 86.36 0.38 3.12 16 15 C -0.13 -3.75 6.08 30.67 0.19 -3.56 16 16 C -0.11 -3.98 5.15 30.62 0.16 -3.82 16 17 C 0.00 -0.02 1.87 -11.61 -0.02 -0.04 16 18 H 0.02 1.05 5.37 -2.39 -0.01 1.04 16 19 C -0.51 -27.77 8.87 25.60 0.23 -27.54 16 20 H 0.05 2.69 8.06 -2.91 -0.02 2.66 16 21 C 0.02 1.20 5.47 84.66 0.46 1.66 16 22 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 23 Si 0.92 44.77 26.94 68.60 1.85 46.61 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.24 -10.90 6.89 99.48 0.69 -10.22 16 27 C 0.14 5.44 5.69 86.22 0.49 5.93 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 2.24 6.07 -2.39 -0.01 2.22 16 32 H 0.09 1.84 4.51 -2.39 -0.01 1.83 16 33 H 0.15 2.72 7.02 -2.91 -0.02 2.70 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 3.63 7.33 -2.91 -0.02 3.61 16 37 H 0.09 1.92 7.15 -2.39 -0.02 1.91 16 38 H 0.10 2.31 5.99 -2.39 -0.01 2.29 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 44 H 0.07 2.88 7.10 -2.39 -0.02 2.86 16 45 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -73.10 361.16 0.31 -72.80 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.97 Total: 15.91 kcal Atomic # 6 Polarization: -51.48 SS G_CDS: 4.32 Total: -47.16 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.37 Total: -91.41 kcal Atomic # 8 Polarization: -79.71 SS G_CDS: -5.18 Total: -84.88 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.85 Total: 46.61 kcal Atomic # 16 Polarization: 88.42 SS G_CDS: -0.29 Total: 88.13 kcal Total: -73.10 0.31 -72.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.843 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds