Wall clock time and date at job start Tue Mar 31 2020 23:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00453 * 2 1 4 4 C 1.50702 * 109.47345 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.00355 * 89.99642 * 4 3 2 6 6 C 1.38231 * 120.00022 * 179.97438 * 5 4 3 7 7 C 1.38238 * 119.99906 * 0.02562 * 6 5 4 8 8 S 1.76200 * 119.99698 * 179.97438 * 7 6 5 9 9 O 1.42105 * 106.39949 * 203.53807 * 8 7 6 10 10 O 1.42099 * 106.40393 * 336.45544 * 8 7 6 11 11 N 1.65602 * 107.22065 * 89.99972 * 8 7 6 12 12 C 1.46927 * 120.62920 * 269.72191 * 11 8 7 13 13 C 1.53622 * 108.54362 * 126.36601 * 12 11 8 14 14 C 1.53039 * 109.24440 * 54.85437 * 13 12 11 15 15 C 1.53044 * 109.53637 * 298.51287 * 14 13 12 16 16 H 1.08999 * 109.49842 * 301.40949 * 15 14 13 17 17 C 1.50700 * 109.52329 * 181.32858 * 15 14 13 18 18 H 1.07997 * 120.00389 * 273.54375 * 17 15 14 19 19 C 1.37880 * 119.99737 * 93.54105 * 17 15 14 20 20 N 1.31515 * 120.00153 * 184.40806 * 19 17 15 21 21 Si 1.86798 * 119.99932 * 4.40991 * 19 17 15 22 22 H 1.48499 * 109.47299 * 84.85260 * 21 19 17 23 23 H 1.48509 * 109.47316 * 204.84926 * 21 19 17 24 24 H 1.48495 * 109.47301 * 324.84900 * 21 19 17 25 25 C 1.46927 * 120.62845 * 89.99591 * 11 8 7 26 26 C 1.38229 * 120.00092 * 359.97418 * 7 6 5 27 27 C 1.38229 * 119.99940 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47064 * 300.00298 * 1 2 3 30 30 H 1.08994 * 109.47203 * 60.00146 * 1 2 3 31 31 H 1.08997 * 109.47256 * 59.99575 * 3 2 1 32 32 H 1.09004 * 109.47008 * 300.00110 * 3 2 1 33 33 H 1.08002 * 119.99949 * 0.25727 * 5 4 3 34 34 H 1.08009 * 120.00154 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.58131 * 246.19952 * 12 11 8 36 36 H 1.08998 * 109.58751 * 6.62263 * 12 11 8 37 37 H 1.08998 * 109.63188 * 294.86181 * 13 12 11 38 38 H 1.08996 * 109.45461 * 174.73725 * 13 12 11 39 39 H 1.08996 * 109.46450 * 178.48995 * 14 13 12 40 40 H 1.09004 * 109.44715 * 58.52163 * 14 13 12 41 41 H 0.96999 * 120.00555 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.58660 * 353.37648 * 25 11 8 43 43 H 1.09001 * 109.58570 * 113.80474 * 25 11 8 44 44 H 1.07997 * 119.99983 * 179.97438 * 26 7 6 45 45 H 1.07998 * 120.00012 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2011 1.1319 -1.1980 6 6 5.5792 1.0232 -1.1985 7 6 6.2686 0.9684 -0.0015 8 16 8.0251 0.8293 -0.0022 9 8 8.3825 0.2547 1.2474 10 8 8.3816 0.2549 -1.2521 11 7 8.6388 2.3674 -0.0023 12 6 8.9214 3.0605 -1.2666 13 6 8.1997 4.4165 -1.2523 14 6 8.6149 5.1958 -0.0023 15 6 8.2001 4.4165 1.2479 16 1 7.1218 4.2574 1.2363 17 6 8.5799 5.1992 2.4784 18 1 9.5698 5.0986 2.8983 19 6 7.6635 6.0440 3.0680 20 7 8.0207 6.7921 4.0890 21 14 5.9147 6.1260 2.4168 22 1 5.1056 5.0442 3.0335 23 1 5.3208 7.4438 2.7574 24 1 5.9272 5.9552 0.9417 25 6 8.9166 3.0625 1.2619 26 6 5.5801 1.0229 1.1958 27 6 4.2021 1.1327 1.1963 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.6628 1.1788 -2.1331 34 1 6.1172 0.9802 -2.1341 35 1 9.9957 3.2162 -1.3657 36 1 8.5586 2.4607 -2.1012 37 1 7.1214 4.2574 -1.2403 38 1 8.4740 4.9832 -2.1420 39 1 8.1255 6.1696 -0.0021 40 1 9.6963 5.3328 -0.0026 41 1 7.3760 7.3861 4.5042 42 1 8.5506 2.4640 2.0961 43 1 9.9905 3.2185 1.3648 44 1 6.1187 0.9797 2.1309 45 1 3.6641 1.1748 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594802838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:24 Heat of formation + Delta-G solvation = -97.205361 kcal Electronic energy + Delta-G solvation = -28368.301871 eV Core-core repulsion = 24477.637065 eV Total energy + Delta-G solvation = -3890.664806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.62910 -37.98028 -37.82158 -37.09429 -35.65437 -33.23553 -32.45275 -31.58048 -31.15182 -30.55629 -27.73467 -25.77467 -25.26728 -23.91700 -22.98450 -21.98507 -21.65022 -19.59441 -18.64799 -18.01262 -17.26888 -16.76258 -16.72224 -16.44173 -16.24648 -15.62411 -14.85405 -14.75329 -14.59658 -14.07867 -14.03377 -13.85438 -13.63014 -13.24536 -13.09114 -12.96355 -12.75829 -12.64102 -12.60658 -12.13318 -11.99425 -11.88198 -11.69278 -11.51869 -11.31453 -11.27455 -11.13224 -10.82617 -10.76455 -10.37627 -10.09435 -10.07940 -9.81841 -9.68307 -9.36169 -9.09925 -9.07999 -8.63090 -8.43868 -6.15531 -4.15230 0.47399 0.76908 1.24595 2.99617 3.20120 3.29504 3.31068 3.33666 3.74833 3.97278 4.34050 4.37649 4.53321 4.58327 4.79867 4.93026 4.95638 5.03069 5.04767 5.06977 5.17345 5.22525 5.31060 5.39763 5.42060 5.57804 5.60990 5.76214 5.84935 5.94182 6.00377 6.03300 6.06889 6.21684 6.28986 6.38006 6.40503 6.54302 6.70578 6.71501 6.75359 6.85122 6.98665 7.20647 7.35742 7.69634 8.42862 8.90202 9.47316 10.97549 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.004970 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.963224 B = 5632.458541 C = 7456.749047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.096 3.904 4 C -0.044 4.044 5 C -0.123 4.123 6 C -0.023 4.023 7 C -0.666 4.666 8 S 2.687 3.313 9 O -0.955 6.955 10 O -0.966 6.966 11 N -0.994 5.994 12 C 0.126 3.874 13 C -0.139 4.139 14 C -0.109 4.109 15 C 0.005 3.995 16 H 0.033 0.967 17 C -0.513 4.513 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.897 5.897 21 Si 0.870 3.130 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.263 1.263 25 C 0.131 3.869 26 C -0.016 4.016 27 C -0.119 4.119 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.264 0.736 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.145 0.855 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 -9.915 -11.534 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.020 3.980 4 C -0.044 4.044 5 C -0.141 4.141 6 C -0.043 4.043 7 C -0.752 4.752 8 S 2.778 3.222 9 O -0.945 6.945 10 O -0.956 6.956 11 N -0.833 5.833 12 C 0.000 4.000 13 C -0.178 4.178 14 C -0.147 4.147 15 C -0.016 4.016 16 H 0.051 0.949 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.127 4.127 20 N -0.534 5.534 21 Si 0.698 3.302 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.188 1.188 25 C 0.008 3.992 26 C -0.035 4.035 27 C -0.138 4.138 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.163 0.837 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.421 -10.720 -11.389 18.794 hybrid contribution -2.055 0.920 -0.190 2.260 sum -12.476 -9.799 -11.579 19.640 Atomic orbital electron populations 1.22783 0.80711 1.02987 1.00155 1.87972 1.19838 1.27020 1.95457 1.21452 0.89588 0.85398 1.01580 1.19845 0.94153 0.96567 0.93850 1.21101 0.94260 1.01118 0.97660 1.20865 0.94483 0.92314 0.96608 1.31248 1.27944 1.16624 0.99392 1.02097 0.73629 0.73064 0.73447 1.93576 1.81997 1.75311 1.43645 1.93537 1.82304 1.75628 1.44111 1.57761 1.77573 1.34313 1.13673 1.21487 1.00707 0.93790 0.83983 1.22115 1.00073 0.95915 0.99723 1.21779 1.00746 0.98547 0.93639 1.19469 0.95791 0.91627 0.94678 0.94908 1.20916 1.01140 1.23910 1.09194 0.90497 1.25009 0.98290 0.94861 0.94511 1.69893 1.35112 1.25418 1.22991 0.86963 0.85725 0.77382 0.80157 1.20153 1.21635 1.18793 1.21837 1.01202 0.94729 0.81472 1.20991 0.94569 0.90933 0.97031 1.21191 0.94375 1.00315 0.97903 0.89390 0.93846 0.93925 0.91785 0.91899 0.85147 0.84225 0.90913 0.90252 0.92446 0.91949 0.92774 0.92494 0.92575 0.89825 0.91154 0.83744 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.25 10.69 -35.23 -0.38 -4.63 16 3 C 0.10 0.99 6.06 36.01 0.22 1.20 16 4 C -0.04 -0.56 5.51 -104.62 -0.58 -1.13 16 5 C -0.12 -1.50 9.70 -39.59 -0.38 -1.89 16 6 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 7 C -0.67 -10.18 5.97 -39.58 -0.24 -10.42 16 8 S 2.69 44.12 5.69 -107.50 -0.61 43.51 16 9 O -0.95 -17.90 16.00 -57.17 -0.91 -18.82 16 10 O -0.97 -16.53 15.99 -57.17 -0.91 -17.44 16 11 N -0.99 -16.38 3.28 -113.27 -0.37 -16.75 16 12 C 0.13 1.80 6.41 -3.49 -0.02 1.78 16 13 C -0.14 -2.12 6.10 -26.39 -0.16 -2.28 16 14 C -0.11 -2.08 5.14 -26.69 -0.14 -2.22 16 15 C 0.00 0.10 1.86 -91.65 -0.17 -0.07 16 16 H 0.03 0.72 5.41 -51.93 -0.28 0.44 16 17 C -0.51 -13.40 8.87 -34.44 -0.31 -13.71 16 18 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 19 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 21 Si 0.87 20.54 26.85 -169.99 -4.56 15.98 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.26 -5.91 6.87 56.52 0.39 -5.53 16 25 C 0.13 2.49 5.64 -3.71 -0.02 2.47 16 26 C -0.02 -0.24 9.52 -39.59 -0.38 -0.62 16 27 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.61 7.62 -52.48 -0.40 1.21 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.99 7.12 -51.93 -0.37 0.62 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.10 8.03 -51.93 -0.42 0.68 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 1.60 7.13 -51.93 -0.37 1.23 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.14 2.12 7.62 -52.49 -0.40 1.72 16 45 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -32.65 376.73 -10.10 -42.74 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.88 Total: 1.57 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -1.92 Total: -26.29 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.40 Total: -42.29 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.21 Total: -40.89 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.56 Total: 15.98 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.61 Total: 43.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.65 -10.10 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.461 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds