Wall clock time and date at job start Tue Mar 31 2020 23:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00453 * 2 1 4 4 C 1.50702 * 109.47345 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.00355 * 89.99642 * 4 3 2 6 6 C 1.38231 * 120.00022 * 179.97438 * 5 4 3 7 7 C 1.38238 * 119.99906 * 0.02562 * 6 5 4 8 8 S 1.76200 * 119.99698 * 179.97438 * 7 6 5 9 9 O 1.42105 * 106.39949 * 203.53807 * 8 7 6 10 10 O 1.42099 * 106.40393 * 336.45544 * 8 7 6 11 11 N 1.65602 * 107.22065 * 89.99972 * 8 7 6 12 12 C 1.46927 * 120.62920 * 269.72191 * 11 8 7 13 13 C 1.53622 * 108.54362 * 126.36601 * 12 11 8 14 14 C 1.53039 * 109.24440 * 54.85437 * 13 12 11 15 15 C 1.53044 * 109.53637 * 298.51287 * 14 13 12 16 16 H 1.08999 * 109.49842 * 301.40949 * 15 14 13 17 17 C 1.50700 * 109.52329 * 181.32858 * 15 14 13 18 18 H 1.07997 * 120.00389 * 273.54375 * 17 15 14 19 19 C 1.37880 * 119.99737 * 93.54105 * 17 15 14 20 20 N 1.31515 * 120.00153 * 184.40806 * 19 17 15 21 21 Si 1.86798 * 119.99932 * 4.40991 * 19 17 15 22 22 H 1.48499 * 109.47299 * 84.85260 * 21 19 17 23 23 H 1.48509 * 109.47316 * 204.84926 * 21 19 17 24 24 H 1.48495 * 109.47301 * 324.84900 * 21 19 17 25 25 C 1.46927 * 120.62845 * 89.99591 * 11 8 7 26 26 C 1.38229 * 120.00092 * 359.97418 * 7 6 5 27 27 C 1.38229 * 119.99940 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47064 * 300.00298 * 1 2 3 30 30 H 1.08994 * 109.47203 * 60.00146 * 1 2 3 31 31 H 1.08997 * 109.47256 * 59.99575 * 3 2 1 32 32 H 1.09004 * 109.47008 * 300.00110 * 3 2 1 33 33 H 1.08002 * 119.99949 * 0.25727 * 5 4 3 34 34 H 1.08009 * 120.00154 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.58131 * 246.19952 * 12 11 8 36 36 H 1.08998 * 109.58751 * 6.62263 * 12 11 8 37 37 H 1.08998 * 109.63188 * 294.86181 * 13 12 11 38 38 H 1.08996 * 109.45461 * 174.73725 * 13 12 11 39 39 H 1.08996 * 109.46450 * 178.48995 * 14 13 12 40 40 H 1.09004 * 109.44715 * 58.52163 * 14 13 12 41 41 H 0.96999 * 120.00555 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.58660 * 353.37648 * 25 11 8 43 43 H 1.09001 * 109.58570 * 113.80474 * 25 11 8 44 44 H 1.07997 * 119.99983 * 179.97438 * 26 7 6 45 45 H 1.07998 * 120.00012 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2011 1.1319 -1.1980 6 6 5.5792 1.0232 -1.1985 7 6 6.2686 0.9684 -0.0015 8 16 8.0251 0.8293 -0.0022 9 8 8.3825 0.2547 1.2474 10 8 8.3816 0.2549 -1.2521 11 7 8.6388 2.3674 -0.0023 12 6 8.9214 3.0605 -1.2666 13 6 8.1997 4.4165 -1.2523 14 6 8.6149 5.1958 -0.0023 15 6 8.2001 4.4165 1.2479 16 1 7.1218 4.2574 1.2363 17 6 8.5799 5.1992 2.4784 18 1 9.5698 5.0986 2.8983 19 6 7.6635 6.0440 3.0680 20 7 8.0207 6.7921 4.0890 21 14 5.9147 6.1260 2.4168 22 1 5.1056 5.0442 3.0335 23 1 5.3208 7.4438 2.7574 24 1 5.9272 5.9552 0.9417 25 6 8.9166 3.0625 1.2619 26 6 5.5801 1.0229 1.1958 27 6 4.2021 1.1327 1.1963 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.6628 1.1788 -2.1331 34 1 6.1172 0.9802 -2.1341 35 1 9.9957 3.2162 -1.3657 36 1 8.5586 2.4607 -2.1012 37 1 7.1214 4.2574 -1.2403 38 1 8.4740 4.9832 -2.1420 39 1 8.1255 6.1696 -0.0021 40 1 9.6963 5.3328 -0.0026 41 1 7.3760 7.3861 4.5042 42 1 8.5506 2.4640 2.0961 43 1 9.9905 3.2185 1.3648 44 1 6.1187 0.9797 2.1309 45 1 3.6641 1.1748 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594802838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:23 Heat of formation + Delta-G solvation = -119.126487 kcal Electronic energy + Delta-G solvation = -28369.252442 eV Core-core repulsion = 24477.637065 eV Total energy + Delta-G solvation = -3891.615378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56930 -39.41286 -38.58468 -38.44607 -37.01361 -35.09503 -33.38901 -33.15000 -32.19702 -32.08534 -28.45323 -27.09467 -26.49405 -25.32677 -23.99011 -23.17681 -22.92826 -21.07997 -19.98546 -19.38086 -18.76099 -18.34447 -17.43019 -17.39812 -17.14221 -16.73703 -16.45253 -15.84165 -15.69756 -15.46077 -15.34776 -14.95225 -14.65368 -14.61875 -14.46598 -14.43758 -14.29113 -14.00168 -13.40965 -13.27836 -13.22813 -12.98700 -12.96530 -12.90947 -12.83863 -12.40996 -12.37788 -12.27083 -12.01238 -11.83309 -11.78832 -11.42813 -11.29712 -10.91708 -10.73614 -10.65151 -10.38746 -10.10541 -9.84906 -8.26929 -6.29843 -0.73138 -0.33993 0.23615 1.33144 1.34719 1.45197 1.83280 2.30329 2.35307 2.67482 3.01692 3.09016 3.18036 3.64479 3.73889 3.79555 3.85666 4.10469 4.16258 4.22656 4.26013 4.33643 4.39743 4.46951 4.51806 4.53074 4.55544 4.63237 4.71829 4.79301 4.84404 4.88201 4.93564 4.99027 5.03314 5.05066 5.14841 5.23106 5.32476 5.33880 5.57413 5.61016 5.72083 5.75174 5.82442 6.10199 6.34432 6.78268 7.35697 8.89880 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.004970 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.963224 B = 5632.458541 C = 7456.749047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.095 3.905 4 C -0.047 4.047 5 C -0.120 4.120 6 C -0.029 4.029 7 C -0.678 4.678 8 S 2.700 3.300 9 O -0.987 6.987 10 O -0.971 6.971 11 N -0.994 5.994 12 C 0.117 3.883 13 C -0.131 4.131 14 C -0.109 4.109 15 C 0.004 3.996 16 H 0.032 0.968 17 C -0.512 4.512 18 H 0.038 0.962 19 C 0.018 3.982 20 N -0.949 5.949 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.241 1.241 25 C 0.140 3.860 26 C -0.041 4.041 27 C -0.132 4.132 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.264 0.736 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.135 0.865 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -10.506 -14.833 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.019 3.981 4 C -0.047 4.047 5 C -0.139 4.139 6 C -0.048 4.048 7 C -0.766 4.766 8 S 2.793 3.207 9 O -0.978 6.978 10 O -0.962 6.962 11 N -0.833 5.833 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.147 4.147 15 C -0.016 4.016 16 H 0.050 0.950 17 C -0.551 4.551 18 H 0.056 0.944 19 C -0.180 4.180 20 N -0.589 5.589 21 Si 0.753 3.247 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.164 1.164 25 C 0.015 3.985 26 C -0.060 4.060 27 C -0.150 4.150 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.153 0.847 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.838 -11.331 -14.720 22.580 hybrid contribution -1.284 1.051 0.842 1.861 sum -14.122 -10.280 -13.878 22.309 Atomic orbital electron populations 1.22978 0.78903 1.04004 1.01273 1.87925 1.21848 1.27482 1.95703 1.21525 0.87874 0.85516 1.03141 1.20245 0.95811 0.95114 0.93556 1.21514 0.93890 0.99565 0.98903 1.21206 0.95333 0.91681 0.96550 1.30960 1.26630 1.18642 1.00373 1.01493 0.74012 0.72614 0.72567 1.93531 1.83017 1.76108 1.45115 1.93519 1.82936 1.75690 1.44014 1.57652 1.78006 1.34169 1.13444 1.21788 1.01754 0.93626 0.83559 1.22052 1.00288 0.95975 0.98626 1.21652 1.00559 0.98019 0.94446 1.19431 0.95888 0.92497 0.93799 0.95022 1.21223 0.99423 1.23859 1.10606 0.94366 1.25818 1.02651 0.94680 0.94816 1.70047 1.36660 1.27059 1.25115 0.86009 0.80498 0.77326 0.80865 1.19277 1.21834 1.16385 1.21474 1.00644 0.93673 0.82736 1.21081 0.95565 0.92441 0.96936 1.21436 0.93887 1.00401 0.99311 0.88546 0.93074 0.92428 0.90986 0.89625 0.81860 0.82194 0.89620 0.87559 0.92158 0.88652 0.94199 0.92690 0.92674 0.90822 0.91386 0.84676 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.94 10.69 -148.98 -1.59 -9.53 16 3 C 0.10 1.64 6.06 71.24 0.43 2.07 16 4 C -0.05 -1.06 5.51 -19.87 -0.11 -1.17 16 5 C -0.12 -2.50 9.70 22.27 0.22 -2.29 16 6 C -0.03 -0.68 9.52 22.27 0.21 -0.47 16 7 C -0.68 -19.74 5.97 22.27 0.13 -19.60 16 8 S 2.70 86.09 5.69 -56.49 -0.32 85.76 16 9 O -0.99 -37.59 16.00 -128.00 -2.05 -39.63 16 10 O -0.97 -31.31 15.99 -128.00 -2.05 -33.36 16 11 N -0.99 -31.42 3.28 -512.28 -1.68 -33.10 16 12 C 0.12 2.99 6.41 86.51 0.55 3.54 16 13 C -0.13 -3.51 6.10 30.82 0.19 -3.33 16 14 C -0.11 -3.99 5.14 30.62 0.16 -3.83 16 15 C 0.00 0.18 1.86 -11.46 -0.02 0.16 16 16 H 0.03 1.36 5.41 -2.39 -0.01 1.35 16 17 C -0.51 -27.67 8.87 25.60 0.23 -27.45 16 18 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 19 C 0.02 0.98 5.47 84.66 0.46 1.45 16 20 N -0.95 -57.80 13.96 21.45 0.30 -57.50 16 21 Si 0.93 42.32 26.85 68.60 1.84 44.16 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.24 -9.97 6.87 99.48 0.68 -9.29 16 25 C 0.14 5.34 5.64 86.36 0.49 5.83 16 26 C -0.04 -1.23 9.52 22.27 0.21 -1.01 16 27 C -0.13 -3.43 9.70 22.27 0.22 -3.22 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 32 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 33 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.16 3.06 7.62 -2.91 -0.02 3.04 16 35 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.11 2.20 7.12 -2.39 -0.02 2.18 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.07 2.93 7.13 -2.39 -0.02 2.91 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.14 4.13 7.62 -2.91 -0.02 4.11 16 45 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -72.56 376.73 0.02 -72.55 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.95 Total: 18.44 kcal Atomic # 6 Polarization: -52.40 SS G_CDS: 4.62 Total: -47.78 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -1.38 Total: -90.60 kcal Atomic # 8 Polarization: -76.84 SS G_CDS: -5.69 Total: -82.52 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.84 Total: 44.16 kcal Atomic # 16 Polarization: 86.09 SS G_CDS: -0.32 Total: 85.76 kcal Total: -72.56 0.02 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.580 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds