Wall clock time and date at job start Tue Mar 31 2020 23:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00428 * 2 1 4 4 C 1.50701 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99936 * 90.00099 * 4 3 2 6 6 C 1.38236 * 119.99948 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99804 * 0.02562 * 6 5 4 8 8 S 1.76204 * 119.99971 * 179.97438 * 7 6 5 9 9 O 1.42095 * 106.40424 * 336.45951 * 8 7 6 10 10 O 1.42104 * 106.40413 * 203.53833 * 8 7 6 11 11 N 1.65597 * 107.21669 * 90.00092 * 8 7 6 12 12 C 1.46927 * 120.63280 * 90.00168 * 11 8 7 13 13 C 1.53196 * 108.77413 * 233.60597 * 12 11 8 14 14 C 1.53031 * 109.31477 * 305.36304 * 13 12 11 15 15 C 1.53046 * 109.53726 * 61.36734 * 14 13 12 16 16 H 1.08990 * 109.49711 * 58.58414 * 15 14 13 17 17 C 1.50699 * 109.49523 * 178.68451 * 15 14 13 18 18 H 1.08003 * 119.99931 * 120.00228 * 17 15 14 19 19 C 1.37875 * 120.00042 * 299.99617 * 17 15 14 20 20 N 1.31512 * 120.00122 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99878 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47277 * 90.00302 * 21 19 17 23 23 H 1.48501 * 109.46978 * 209.99884 * 21 19 17 24 24 H 1.48490 * 109.47268 * 329.99859 * 21 19 17 25 25 C 1.46923 * 120.63166 * 269.99858 * 11 8 7 26 26 C 1.38237 * 120.00394 * 0.24999 * 7 6 5 27 27 C 1.38236 * 119.99816 * 270.02235 * 4 3 2 28 28 H 1.08996 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47338 * 300.00502 * 1 2 3 30 30 H 1.09007 * 109.46813 * 59.99836 * 1 2 3 31 31 H 1.08995 * 109.46872 * 59.99732 * 3 2 1 32 32 H 1.08999 * 109.47070 * 300.00008 * 3 2 1 33 33 H 1.07997 * 120.00227 * 359.97438 * 5 4 3 34 34 H 1.07997 * 120.00603 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.58956 * 113.82039 * 12 11 8 36 36 H 1.08998 * 109.58709 * 353.39377 * 12 11 8 37 37 H 1.09004 * 109.49841 * 185.40709 * 13 12 11 38 38 H 1.09000 * 109.49679 * 65.31895 * 13 12 11 39 39 H 1.08995 * 109.46212 * 301.34533 * 14 13 12 40 40 H 1.09006 * 109.45283 * 181.37857 * 14 13 12 41 41 H 0.96999 * 120.00027 * 179.97438 * 20 19 17 42 42 H 1.09009 * 109.58590 * 6.60754 * 25 11 8 43 43 H 1.08995 * 109.59117 * 246.17987 * 25 11 8 44 44 H 1.08001 * 120.00532 * 179.72515 * 26 7 6 45 45 H 1.08007 * 119.99750 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2021 1.1315 -1.1962 6 6 5.5800 1.0217 -1.1956 7 6 6.2685 0.9663 0.0018 8 16 8.0249 0.8257 0.0026 9 8 8.3820 0.2513 -1.2470 10 8 8.3809 0.2506 1.2524 11 7 8.6397 2.3633 0.0034 12 6 8.9170 3.0580 1.2680 13 6 8.2011 4.4123 1.2538 14 6 8.6171 5.1917 0.0042 15 6 8.2022 4.4130 -1.2464 16 1 7.1240 4.2544 -1.2351 17 6 8.5833 5.1963 -2.4761 18 1 9.2653 4.7709 -3.1975 19 6 8.0614 6.4560 -2.6802 20 7 7.2306 6.9738 -1.8020 21 14 8.5333 7.4267 -4.2049 22 1 7.5771 7.1240 -5.3000 23 1 8.4920 8.8793 -3.8992 24 1 9.9057 7.0486 -4.6273 25 6 8.9182 3.0587 -1.2605 26 6 5.5785 1.0153 1.1987 27 6 4.2010 1.1315 1.1981 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.6641 1.1736 -2.1317 34 1 6.1188 0.9785 -2.1306 35 1 9.9908 3.2135 1.3716 36 1 8.5502 2.4595 2.1018 37 1 8.4758 4.9784 2.1439 38 1 7.1228 4.2537 1.2415 39 1 9.6984 5.3285 0.0047 40 1 8.1278 6.1658 0.0043 41 1 6.8637 7.8602 -1.9455 42 1 8.5521 2.4606 -2.0951 43 1 9.9921 3.2142 -1.3631 44 1 6.1160 0.9675 2.1343 45 1 3.6622 1.1735 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594802839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:28 Heat of formation + Delta-G solvation = -97.795779 kcal Electronic energy + Delta-G solvation = -28141.323603 eV Core-core repulsion = 24250.633194 eV Total energy + Delta-G solvation = -3890.690409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.53097 -37.77977 -37.71263 -37.00842 -35.57339 -33.34134 -32.35736 -31.13330 -31.04053 -30.12732 -27.66019 -25.69865 -25.14737 -23.63072 -22.88796 -21.88391 -21.68033 -19.57620 -18.49297 -17.85578 -17.09148 -16.66561 -16.37313 -16.18500 -16.15193 -15.55389 -14.82230 -14.65955 -14.59328 -13.97216 -13.90663 -13.55189 -13.53219 -13.21423 -12.95341 -12.80851 -12.69273 -12.56787 -12.19075 -12.05478 -11.83127 -11.75150 -11.61894 -11.32520 -11.22149 -11.01693 -10.86878 -10.76989 -10.66238 -10.27977 -10.01180 -9.96887 -9.83453 -9.47970 -9.20588 -8.98689 -8.87624 -8.47992 -8.18474 -6.05202 -4.12531 0.58106 0.87482 1.35178 3.09712 3.26914 3.34155 3.37347 3.43771 3.83243 4.07220 4.38367 4.47969 4.61942 4.67737 4.89467 5.00384 5.02182 5.12257 5.14958 5.20160 5.26311 5.31669 5.35960 5.52035 5.66877 5.70839 5.78424 5.94262 5.99291 6.10812 6.13801 6.24328 6.30994 6.38554 6.45768 6.58820 6.62989 6.79210 6.84491 6.85489 6.99985 7.18409 7.41093 7.67267 7.89842 8.05725 8.35830 8.91257 9.52751 10.99923 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.004094 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.507916 B = 6837.891996 C = 8465.795212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.097 3.903 4 C -0.043 4.043 5 C -0.118 4.118 6 C -0.014 4.014 7 C -0.664 4.664 8 S 2.689 3.311 9 O -0.959 6.959 10 O -0.967 6.967 11 N -0.989 5.989 12 C 0.125 3.875 13 C -0.135 4.135 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.516 4.516 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.125 3.875 26 C -0.023 4.023 27 C -0.122 4.122 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.260 0.740 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.139 0.861 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -9.548 6.661 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.020 3.980 4 C -0.043 4.043 5 C -0.136 4.136 6 C -0.033 4.033 7 C -0.750 4.750 8 S 2.779 3.221 9 O -0.950 6.950 10 O -0.958 6.958 11 N -0.829 5.829 12 C 0.000 4.000 13 C -0.174 4.174 14 C -0.148 4.148 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.555 4.555 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C 0.001 3.999 26 C -0.042 4.042 27 C -0.141 4.141 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.157 0.843 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.795 -10.332 6.692 15.129 hybrid contribution -0.842 1.355 -0.816 1.792 sum -9.637 -8.977 5.877 14.422 Atomic orbital electron populations 1.22774 0.80789 1.02905 1.00147 1.87970 1.19776 1.27162 1.95462 1.21451 0.89639 0.85272 1.01599 1.19815 0.94065 0.96605 0.93847 1.21148 0.94316 1.00374 0.97806 1.20938 0.94524 0.90956 0.96887 1.31217 1.27855 1.16540 0.99400 1.02005 0.73674 0.73078 0.73329 1.93557 1.82135 1.75511 1.43767 1.93532 1.82378 1.75741 1.44130 1.57632 1.77486 1.34074 1.13685 1.21432 1.00582 0.94326 0.83671 1.22010 0.99932 0.95271 1.00173 1.21572 0.99210 1.01601 0.92388 1.18979 0.95753 0.89206 0.94090 0.95215 1.21113 1.27789 1.00791 1.05789 0.92361 1.24925 0.94850 0.97553 0.96385 1.69875 1.31114 1.16815 1.34867 0.86609 0.79006 0.79150 0.83314 1.20726 1.21319 1.19839 1.21864 1.00889 0.95719 0.81389 1.20851 0.94488 0.92286 0.96604 1.21092 0.94260 1.01101 0.97658 0.89474 0.93936 0.93871 0.91904 0.91760 0.85031 0.83954 0.91355 0.90653 0.92572 0.92524 0.94521 0.88787 0.93024 0.90595 0.91730 0.84327 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.35 10.69 -35.23 -0.38 -4.73 16 3 C 0.10 1.02 6.06 36.01 0.22 1.24 16 4 C -0.04 -0.56 5.51 -104.62 -0.58 -1.14 16 5 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 6 C -0.01 -0.22 9.52 -39.58 -0.38 -0.59 16 7 C -0.66 -10.57 5.97 -39.58 -0.24 -10.80 16 8 S 2.69 46.09 5.69 -107.50 -0.61 45.48 16 9 O -0.96 -18.43 16.00 -57.17 -0.91 -19.35 16 10 O -0.97 -17.37 15.99 -57.17 -0.91 -18.29 16 11 N -0.99 -17.43 3.29 -113.52 -0.37 -17.80 16 12 C 0.13 2.01 6.38 -3.71 -0.02 1.98 16 13 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 14 C -0.11 -2.38 4.96 -26.69 -0.13 -2.51 16 15 C 0.04 0.91 2.25 -91.65 -0.21 0.71 16 16 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.52 -13.30 8.56 -34.44 -0.29 -13.60 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.06 11.31 55.43 0.63 -23.43 16 21 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.12 2.49 5.60 -3.71 -0.02 2.47 16 26 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 27 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 2.11 7.62 -52.49 -0.40 1.71 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 41 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.08 1.49 7.13 -51.92 -0.37 1.12 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.14 1.73 7.61 -52.49 -0.40 1.33 16 45 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -31.16 377.10 -10.72 -41.89 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.88 Total: 1.63 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -1.94 Total: -26.52 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.25 Total: -41.23 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -2.21 Total: -42.36 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 46.09 SS G_CDS: -0.61 Total: 45.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.16 -10.72 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.911 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds