Wall clock time and date at job start Tue Mar 31 2020 23:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00428 * 2 1 4 4 C 1.50701 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99936 * 90.00099 * 4 3 2 6 6 C 1.38236 * 119.99948 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99804 * 0.02562 * 6 5 4 8 8 S 1.76204 * 119.99971 * 179.97438 * 7 6 5 9 9 O 1.42095 * 106.40424 * 336.45951 * 8 7 6 10 10 O 1.42104 * 106.40413 * 203.53833 * 8 7 6 11 11 N 1.65597 * 107.21669 * 90.00092 * 8 7 6 12 12 C 1.46927 * 120.63280 * 90.00168 * 11 8 7 13 13 C 1.53196 * 108.77413 * 233.60597 * 12 11 8 14 14 C 1.53031 * 109.31477 * 305.36304 * 13 12 11 15 15 C 1.53046 * 109.53726 * 61.36734 * 14 13 12 16 16 H 1.08990 * 109.49711 * 58.58414 * 15 14 13 17 17 C 1.50699 * 109.49523 * 178.68451 * 15 14 13 18 18 H 1.08003 * 119.99931 * 120.00228 * 17 15 14 19 19 C 1.37875 * 120.00042 * 299.99617 * 17 15 14 20 20 N 1.31512 * 120.00122 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99878 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47277 * 90.00302 * 21 19 17 23 23 H 1.48501 * 109.46978 * 209.99884 * 21 19 17 24 24 H 1.48490 * 109.47268 * 329.99859 * 21 19 17 25 25 C 1.46923 * 120.63166 * 269.99858 * 11 8 7 26 26 C 1.38237 * 120.00394 * 0.24999 * 7 6 5 27 27 C 1.38236 * 119.99816 * 270.02235 * 4 3 2 28 28 H 1.08996 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47338 * 300.00502 * 1 2 3 30 30 H 1.09007 * 109.46813 * 59.99836 * 1 2 3 31 31 H 1.08995 * 109.46872 * 59.99732 * 3 2 1 32 32 H 1.08999 * 109.47070 * 300.00008 * 3 2 1 33 33 H 1.07997 * 120.00227 * 359.97438 * 5 4 3 34 34 H 1.07997 * 120.00603 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.58956 * 113.82039 * 12 11 8 36 36 H 1.08998 * 109.58709 * 353.39377 * 12 11 8 37 37 H 1.09004 * 109.49841 * 185.40709 * 13 12 11 38 38 H 1.09000 * 109.49679 * 65.31895 * 13 12 11 39 39 H 1.08995 * 109.46212 * 301.34533 * 14 13 12 40 40 H 1.09006 * 109.45283 * 181.37857 * 14 13 12 41 41 H 0.96999 * 120.00027 * 179.97438 * 20 19 17 42 42 H 1.09009 * 109.58590 * 6.60754 * 25 11 8 43 43 H 1.08995 * 109.59117 * 246.17987 * 25 11 8 44 44 H 1.08001 * 120.00532 * 179.72515 * 26 7 6 45 45 H 1.08007 * 119.99750 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2021 1.1315 -1.1962 6 6 5.5800 1.0217 -1.1956 7 6 6.2685 0.9663 0.0018 8 16 8.0249 0.8257 0.0026 9 8 8.3820 0.2513 -1.2470 10 8 8.3809 0.2506 1.2524 11 7 8.6397 2.3633 0.0034 12 6 8.9170 3.0580 1.2680 13 6 8.2011 4.4123 1.2538 14 6 8.6171 5.1917 0.0042 15 6 8.2022 4.4130 -1.2464 16 1 7.1240 4.2544 -1.2351 17 6 8.5833 5.1963 -2.4761 18 1 9.2653 4.7709 -3.1975 19 6 8.0614 6.4560 -2.6802 20 7 7.2306 6.9738 -1.8020 21 14 8.5333 7.4267 -4.2049 22 1 7.5771 7.1240 -5.3000 23 1 8.4920 8.8793 -3.8992 24 1 9.9057 7.0486 -4.6273 25 6 8.9182 3.0587 -1.2605 26 6 5.5785 1.0153 1.1987 27 6 4.2010 1.1315 1.1981 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.6641 1.1736 -2.1317 34 1 6.1188 0.9785 -2.1306 35 1 9.9908 3.2135 1.3716 36 1 8.5502 2.4595 2.1018 37 1 8.4758 4.9784 2.1439 38 1 7.1228 4.2537 1.2415 39 1 9.6984 5.3285 0.0047 40 1 8.1278 6.1658 0.0043 41 1 6.8637 7.8602 -1.9455 42 1 8.5521 2.4606 -2.0951 43 1 9.9921 3.2142 -1.3631 44 1 6.1160 0.9675 2.1343 45 1 3.6622 1.1735 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594802839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:27 Heat of formation + Delta-G solvation = -117.161098 kcal Electronic energy + Delta-G solvation = -28142.163346 eV Core-core repulsion = 24250.633194 eV Total energy + Delta-G solvation = -3891.530152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.53285 -39.29924 -38.55950 -38.42874 -37.00074 -35.18679 -33.35649 -32.70464 -32.12470 -31.84533 -28.42730 -27.01535 -26.46861 -25.17778 -23.96673 -23.30369 -22.91400 -21.13877 -19.87910 -19.21456 -18.51306 -18.03987 -17.40458 -17.38203 -17.11690 -16.77123 -16.50920 -15.79068 -15.67601 -15.31997 -15.20749 -14.93899 -14.76718 -14.59254 -14.38682 -14.29751 -14.02049 -13.79855 -13.32635 -13.23956 -13.20956 -12.96400 -12.88669 -12.77486 -12.65853 -12.51998 -12.35644 -12.24629 -11.94785 -11.85253 -11.77089 -11.51594 -11.05731 -10.73507 -10.71521 -10.39505 -10.34688 -10.06792 -9.75848 -8.05096 -6.18753 -0.69783 -0.30021 0.27332 1.43504 1.45852 1.54650 1.85973 2.32957 2.46812 2.69837 3.03933 3.20151 3.22256 3.67115 3.76841 3.83296 3.88312 4.13792 4.25569 4.28028 4.35485 4.35958 4.49104 4.54049 4.57311 4.59931 4.62855 4.66715 4.82625 4.85873 4.89396 4.92184 4.96921 5.02452 5.06391 5.11998 5.31311 5.35788 5.40085 5.56358 5.68085 5.74758 5.78573 6.02367 6.12242 6.19819 6.42512 6.92364 7.49057 8.98216 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.004094 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.507916 B = 6837.891996 C = 8465.795212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.097 3.903 4 C -0.046 4.046 5 C -0.128 4.128 6 C -0.037 4.037 7 C -0.678 4.678 8 S 2.703 3.297 9 O -0.986 6.986 10 O -0.974 6.974 11 N -0.992 5.992 12 C 0.121 3.879 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.040 3.960 16 H 0.001 0.999 17 C -0.535 4.535 18 H 0.055 0.945 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.948 3.052 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.269 1.269 25 C 0.135 3.865 26 C -0.032 4.032 27 C -0.123 4.123 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.156 0.844 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 -9.826 7.829 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.021 3.979 4 C -0.047 4.047 5 C -0.147 4.147 6 C -0.057 4.057 7 C -0.766 4.766 8 S 2.796 3.204 9 O -0.976 6.976 10 O -0.965 6.965 11 N -0.830 5.830 12 C -0.004 4.004 13 C -0.165 4.165 14 C -0.143 4.143 15 C 0.020 3.980 16 H 0.019 0.981 17 C -0.573 4.573 18 H 0.074 0.926 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.774 3.226 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.194 1.194 25 C 0.010 3.990 26 C -0.051 4.051 27 C -0.141 4.141 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.174 0.826 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.712 -10.619 7.866 16.400 hybrid contribution -0.661 1.417 -1.164 1.949 sum -10.373 -9.202 6.702 15.401 Atomic orbital electron populations 1.22978 0.78911 1.04000 1.01270 1.87923 1.21850 1.27474 1.95703 1.21500 0.87827 0.85461 1.03097 1.20231 0.95819 0.95092 0.93539 1.21427 0.93823 1.00186 0.99267 1.21067 0.95573 0.92235 0.96788 1.30956 1.26670 1.18589 1.00414 1.01399 0.73968 0.72517 0.72534 1.93516 1.83051 1.76117 1.44962 1.93512 1.83005 1.75796 1.44148 1.57577 1.77985 1.34041 1.13407 1.21634 1.01480 0.93634 0.83632 1.21902 0.99691 0.95929 0.98951 1.21400 0.98545 1.00453 0.93948 1.18891 0.94240 0.90819 0.94008 0.98078 1.21499 1.27644 1.01342 1.06852 0.92639 1.25601 0.94960 0.98512 0.98843 1.70004 1.31927 1.16976 1.36193 0.85713 0.78798 0.77791 0.80270 1.20480 1.21121 1.19362 1.21555 1.00505 0.94278 0.82616 1.21171 0.95408 0.91985 0.96559 1.21498 0.93885 0.99761 0.98990 0.88498 0.92550 0.92987 0.89909 0.90810 0.83423 0.84535 0.89906 0.88033 0.89962 0.93156 0.94793 0.92001 0.93155 0.90947 0.91408 0.82623 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.41 10.69 -148.98 -1.59 -10.00 16 3 C 0.10 1.82 6.06 71.24 0.43 2.26 16 4 C -0.05 -1.14 5.51 -19.87 -0.11 -1.25 16 5 C -0.13 -3.52 9.70 22.27 0.22 -3.30 16 6 C -0.04 -1.18 9.52 22.27 0.21 -0.96 16 7 C -0.68 -21.39 5.97 22.27 0.13 -21.25 16 8 S 2.70 91.80 5.69 -56.49 -0.32 91.48 16 9 O -0.99 -38.44 16.00 -128.00 -2.05 -40.48 16 10 O -0.97 -33.70 15.99 -128.00 -2.05 -35.75 16 11 N -0.99 -34.41 3.29 -513.07 -1.69 -36.10 16 12 C 0.12 3.64 6.38 86.36 0.55 4.19 16 13 C -0.13 -4.25 6.08 30.67 0.19 -4.07 16 14 C -0.11 -4.61 4.96 30.62 0.15 -4.45 16 15 C 0.04 1.90 2.25 -11.46 -0.03 1.88 16 16 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 17 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 18 H 0.06 2.87 7.74 -2.91 -0.02 2.84 16 19 C 0.02 1.06 5.30 84.65 0.45 1.51 16 20 N -0.91 -50.33 11.31 21.45 0.24 -50.09 16 21 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 C 0.14 5.44 5.60 86.36 0.48 5.93 16 26 C -0.03 -0.86 9.52 22.27 0.21 -0.65 16 27 C -0.12 -2.90 9.70 22.27 0.22 -2.69 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 32 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 33 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.14 4.29 7.62 -2.91 -0.02 4.26 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.10 2.57 7.13 -2.39 -0.02 2.55 16 37 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 3.12 6.04 -2.38 -0.01 3.10 16 41 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.07 2.93 7.13 -2.38 -0.02 2.91 16 43 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.16 3.54 7.61 -2.91 -0.02 3.52 16 45 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -67.25 377.10 0.12 -67.13 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.97 Total: 18.69 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 4.58 Total: -49.20 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.45 Total: -86.18 kcal Atomic # 8 Polarization: -80.55 SS G_CDS: -5.69 Total: -86.23 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 91.80 SS G_CDS: -0.32 Total: 91.48 kcal Total: -67.25 0.12 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.031 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds