Wall clock time and date at job start Tue Mar 31 2020 22:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47106 * 2 1 4 4 C 1.46504 * 119.99733 * 90.22092 * 3 2 1 5 5 C 1.50700 * 109.47284 * 95.61477 * 4 3 2 6 6 H 1.08008 * 119.99715 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00204 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99956 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47230 * 89.99757 * 9 7 5 11 11 H 1.48495 * 109.47142 * 209.99831 * 9 7 5 12 12 H 1.48497 * 109.47467 * 330.00088 * 9 7 5 13 13 C 1.34776 * 120.00798 * 270.22371 * 3 2 1 14 14 O 1.21282 * 119.99549 * 356.02320 * 13 3 2 15 15 C 1.50699 * 120.00655 * 176.02481 * 13 3 2 16 16 H 1.09003 * 109.46561 * 331.00599 * 15 13 3 17 17 C 1.52997 * 109.46879 * 91.00168 * 15 13 3 18 18 S 1.81400 * 109.46885 * 186.28437 * 17 15 13 19 19 C 1.81401 * 101.92330 * 180.02562 * 18 17 15 20 20 O 1.42099 * 108.58191 * 294.48772 * 18 17 15 21 21 O 1.42103 * 108.58031 * 65.51433 * 18 17 15 22 22 C 1.50696 * 109.47162 * 211.00125 * 15 13 3 23 23 C 1.38233 * 120.00337 * 299.72600 * 22 15 13 24 24 C 1.38236 * 120.00220 * 179.78705 * 23 22 15 25 25 C 1.38237 * 119.99745 * 0.44019 * 24 23 22 26 26 C 1.38236 * 120.00008 * 359.81604 * 25 24 23 27 27 C 1.38235 * 119.99938 * 359.97211 * 26 25 24 28 28 H 1.09003 * 109.47447 * 184.49423 * 1 2 3 29 29 H 1.08998 * 109.47385 * 304.49061 * 1 2 3 30 30 H 1.08996 * 109.47394 * 64.49349 * 1 2 3 31 31 H 1.09006 * 109.47235 * 240.00553 * 2 1 3 32 32 H 1.08992 * 109.47392 * 120.00765 * 2 1 3 33 33 H 1.09001 * 109.46932 * 215.61256 * 4 3 2 34 34 H 1.08999 * 109.46889 * 335.61478 * 4 3 2 35 35 H 0.96996 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47555 * 306.28476 * 17 15 13 37 37 H 1.09000 * 109.47653 * 66.29079 * 17 15 13 38 38 H 1.09000 * 109.47133 * 59.99617 * 19 18 17 39 39 H 1.09002 * 109.47371 * 180.02562 * 19 18 17 40 40 H 1.09007 * 109.46914 * 299.99945 * 19 18 17 41 41 H 1.07999 * 119.99829 * 359.97438 * 23 22 15 42 42 H 1.07995 * 119.99930 * 180.27453 * 24 23 22 43 43 H 1.08001 * 120.00090 * 179.83157 * 25 24 23 44 44 H 1.07998 * 119.99934 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.99687 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2670 2.0701 1.2688 5 6 3.7253 1.9486 1.6289 6 1 4.3993 1.4115 0.9780 7 6 4.1988 2.5222 2.7898 8 7 3.3780 3.1757 3.5827 9 14 6.0063 2.3709 3.2365 10 1 6.7564 3.5152 2.6591 11 1 6.1533 2.3778 4.7141 12 1 6.5464 1.0996 2.6913 13 6 2.2386 2.0182 -1.1671 14 8 2.1021 1.4257 -2.2165 15 6 2.6548 3.4666 -1.1683 16 1 2.2501 3.9615 -0.2854 17 6 4.1818 3.5584 -1.1495 18 16 4.6810 5.2925 -0.9637 19 6 6.4905 5.1640 -0.9672 20 8 4.2761 6.0070 -2.1233 21 8 4.2616 5.7499 0.3147 22 6 2.1262 4.1401 -2.4084 23 6 2.5081 3.6868 -3.6573 24 6 2.0198 4.3018 -4.7949 25 6 1.1567 5.3759 -4.6836 26 6 0.7790 5.8326 -3.4347 27 6 1.2639 5.2147 -2.2971 28 1 -0.3634 -1.0245 0.0805 29 1 -0.3634 0.5819 0.8470 30 1 -0.3634 0.4425 -0.9275 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.0042 3.1232 1.1680 34 1 1.6602 1.6175 2.0530 35 1 3.7113 3.5796 4.3992 36 1 4.5707 2.9768 -0.3136 37 1 4.5812 3.1636 -2.0837 38 1 6.8215 4.7220 -1.9070 39 1 6.9255 6.1577 -0.8595 40 1 6.8117 4.5351 -0.1368 41 1 3.1856 2.8502 -3.7442 42 1 2.3147 3.9449 -5.7706 43 1 0.7773 5.8582 -5.5724 44 1 0.1044 6.6715 -3.3478 45 1 0.9685 5.5713 -1.3214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:02 Heat of formation + Delta-G solvation = -75.430178 kcal Electronic energy + Delta-G solvation = -29326.360094 eV Core-core repulsion = 25436.639531 eV Total energy + Delta-G solvation = -3889.720564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.96170 -38.33344 -36.52809 -35.60345 -35.29023 -34.09435 -32.76645 -30.56413 -30.50850 -29.64961 -28.88073 -27.13393 -25.02253 -23.13380 -22.79318 -22.25039 -20.85479 -18.49331 -18.34131 -16.91192 -16.66653 -16.58355 -15.94730 -15.76060 -15.58791 -15.42035 -14.73285 -14.57681 -14.30255 -14.25990 -13.48740 -13.39434 -13.10500 -13.03820 -13.01857 -12.73212 -12.62166 -12.30171 -12.05308 -11.99488 -11.69279 -11.60690 -11.57475 -11.51647 -11.31854 -11.04759 -10.90065 -10.77618 -10.72844 -10.61508 -10.47164 -10.37752 -10.11893 -9.80321 -9.06473 -8.61925 -8.47548 -8.34891 -7.79406 -6.24875 -4.33563 0.31152 1.65776 1.82209 3.05590 3.11309 3.19486 3.22834 3.25213 3.77716 3.98810 4.19094 4.25483 4.35834 4.83020 4.92369 5.01422 5.07328 5.11765 5.21649 5.30023 5.33529 5.41256 5.46038 5.63825 5.75749 5.76658 5.79082 5.83915 5.84575 6.01410 6.17928 6.20922 6.28860 6.38399 6.42467 6.59596 6.72146 6.78756 6.84459 6.97876 7.14275 7.36563 7.46309 7.68459 7.98020 8.23520 8.69653 8.91460 9.33646 10.82325 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.006275 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.469186 B = 4461.315639 C = 6317.578887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.592 5.592 4 C 0.232 3.768 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.074 3.926 8 N -0.874 5.874 9 Si 0.879 3.121 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.535 3.465 14 O -0.562 6.562 15 C -0.043 4.043 16 H 0.118 0.882 17 C -0.601 4.601 18 S 2.410 3.590 19 C -0.665 4.665 20 O -0.933 6.933 21 O -0.920 6.920 22 C -0.089 4.089 23 C -0.070 4.070 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.268 0.732 36 H 0.166 0.834 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 1.944 -9.995 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.322 5.322 4 C 0.112 3.888 5 C -0.591 4.591 6 H 0.081 0.919 7 C -0.131 4.131 8 N -0.510 5.510 9 Si 0.706 3.294 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.196 1.196 13 C 0.321 3.679 14 O -0.443 6.443 15 C -0.065 4.065 16 H 0.136 0.864 17 C -0.729 4.729 18 S 2.591 3.409 19 C -0.813 4.813 20 O -0.930 6.930 21 O -0.917 6.917 22 C -0.089 4.089 23 C -0.088 4.088 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.184 0.816 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.051 2.492 -10.227 10.526 hybrid contribution 1.658 -0.766 0.568 1.912 sum 1.708 1.726 -9.659 9.960 Atomic orbital electron populations 1.22123 0.96815 1.01311 1.02031 1.21260 0.93432 0.83648 1.02531 1.48251 1.62808 1.13446 1.07706 1.19543 0.96947 0.93006 0.79319 1.21388 0.93926 1.36473 1.07275 0.91894 1.24898 0.97739 0.94587 0.95922 1.69864 1.34946 1.33419 1.12791 0.86784 0.85304 0.78662 0.78646 1.20060 1.20550 1.19561 1.19783 0.76784 0.87665 0.83656 1.90584 1.54264 1.67812 1.31604 1.19767 0.92348 0.96196 0.98182 0.86440 1.30422 1.03349 1.25970 1.13200 1.08182 0.78239 0.78580 0.75904 1.30348 1.28031 1.11562 1.11353 1.93601 1.79915 1.69072 1.50420 1.93665 1.79240 1.78198 1.40568 1.19522 0.98996 0.96459 0.93937 1.20971 0.98681 0.97659 0.91491 1.21036 0.98616 0.96773 0.98147 1.21053 0.98223 0.97067 0.97161 1.20950 1.00632 0.99990 0.92492 1.21036 0.96598 0.95297 0.98954 0.92375 0.92446 0.92860 0.90986 0.90451 0.94205 0.94204 0.92170 0.81621 0.85364 0.85635 0.85631 0.85203 0.85680 0.86531 0.86669 0.86362 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.24 37.15 0.38 -2.16 16 2 C 0.11 2.02 6.13 -4.05 -0.02 2.00 16 3 N -0.59 -11.93 2.47 -175.06 -0.43 -12.37 16 4 C 0.23 5.23 4.96 -5.19 -0.03 5.21 16 5 C -0.55 -13.23 7.37 -34.44 -0.25 -13.49 16 6 H 0.06 1.48 7.22 -52.48 -0.38 1.10 16 7 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 8 N -0.87 -23.37 13.29 55.43 0.74 -22.63 16 9 Si 0.88 19.15 29.54 -169.99 -5.02 14.13 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.53 10.74 6.66 -10.99 -0.07 10.67 16 14 O -0.56 -11.92 14.15 5.56 0.08 -11.84 16 15 C -0.04 -0.80 1.75 -92.93 -0.16 -0.96 16 16 H 0.12 2.30 5.68 -51.93 -0.29 2.01 16 17 C -0.60 -9.91 5.12 37.16 0.19 -9.72 16 18 S 2.41 38.78 5.23 -107.50 -0.56 38.22 16 19 C -0.66 -7.91 10.62 101.05 1.07 -6.84 16 20 O -0.93 -16.19 16.48 -57.83 -0.95 -17.14 16 21 O -0.92 -18.74 18.10 -57.83 -1.05 -19.79 16 22 C -0.09 -1.57 3.10 -104.63 -0.32 -1.89 16 23 C -0.07 -1.17 7.88 -39.58 -0.31 -1.49 16 24 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 25 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 26 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 27 C -0.10 -1.69 9.40 -39.58 -0.37 -2.07 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.27 7.38 -51.93 -0.38 0.89 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.04 0.95 5.95 -51.93 -0.31 0.64 16 34 H 0.04 0.94 8.03 -51.93 -0.42 0.53 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.17 2.90 5.32 -51.92 -0.28 2.63 16 37 H 0.13 1.73 7.17 -51.92 -0.37 1.36 16 38 H 0.12 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 40 H 0.13 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.13 2.05 6.72 -52.49 -0.35 1.70 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 1.90 7.95 -52.49 -0.42 1.48 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -31.89 380.23 -9.23 -41.12 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.56 Total: 10.09 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -1.20 Total: -25.52 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.30 Total: -35.00 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.92 Total: -48.77 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: 38.78 SS G_CDS: -0.56 Total: 38.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.89 -9.23 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.311 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds